1KR8

Refinement of d(GCGAAGC) Hairpin Structure Using One-and Two-Bonds Residual Dipolar Couplings


SOLUTION NMR
NMR Experiment
ExperimentTypeSample ContentsSolventIonic StrengthpHPressureTemperature (K)Spectrometer
12D NOESY6mM natural abundance d(GCGAAGC), 10mM phosphate buffer NaD2O10 mM6.71 atm303
22D NOESY6mM natural abundance d(GCGAAGC), 10mM phosphate buffer Na, 90% H2O, 10% D2O90% H2O/10% D2O10 mM6.71 atm277
3E-COSY6mM natural abundance d(GCGAAGC), 10mM phosphate buffer NaD2O10 mM6.71 atm303
4DQF-COSY6mM natural abundance d(GCGAAGC), 10mM phosphate buffer NaD2O10 mM6.71 atm303
5coupled HSQCU-15N,13C, 0.5mM d(GCGAAGC), 10mM phosphate buffer Na, 90% H2O, 10% D2O90% H2O/10% D2O10 mM6.71 atm303
6S3E E-COSYU-15N,13C, 0.5mM d(GCGAAGC), 10mM phosphate buffer Na, 90% H2O, 10% D2O90% H2O/10% D2O10 mM6.71 atm303
NMR Spectrometer Information
SpectrometerManufacturerModelField Strength
1BrukerAVANCE500
NMR Refinement
MethodDetailsSoftware
molecular dynamicsXwinNMR
NMR Ensemble Information
Conformer Selection Criteriaall calculated structures submitted
Conformers Calculated Total Number14
Conformers Submitted Total Number14
Representative Model7 (closest to the average)
Additional NMR Experimental Information
DetailsThe structure was determined using triple-resonance NMR spectroscopy in isotropic and liquid crystalline phase.
Computation: NMR Software
#ClassificationVersionSoftware NameAuthor
1collectionXwinNMR2.1, 3.0Bruker
2processingXwinNMR2.1, 3.0Bruker
3data analysisSparky3.xT. D. Goddard and D. G. Kneller
4structure solutionAmber6.0Kollman, Case et. al
5refinementAmber6.0Kollman, Case et. al