1JS5
Solution Structure of dAAUAA DNA Bulge
SOLUTION NMR
| NMR Spectrometer Information | |||
|---|---|---|---|
| Spectrometer | Manufacturer | Model | Field Strength |
| 1 | Varian | INOVA | 500 |
| 2 | Varian | INOVA | 600 |
| 3 | Varian | INOVA | 750 |
| NMR Refinement | ||
|---|---|---|
| Method | Details | Software |
| matrix relaxation, torsion angle dynamics, energy minimization | the structures are based on a total of 932 restraints, 671 are NOE-derived distance constraints, 235 dihedral angle restraints,26 distance restraints from hydrogen bonds. | NMRPipe |
| NMR Ensemble Information | |
|---|---|
| Conformer Selection Criteria | |
| Conformers Calculated Total Number | |
| Conformers Submitted Total Number | 1 |
| Representative Model | (minimized average structure) |
| Additional NMR Experimental Information | |
|---|---|
| Details | THE FINAL AVERAGE STRUCTURE WAS OBTAINED BY COORDINATE AVERAGING OF THE FINAL ENSEMBLE OF STRUCTURES, FOLLOWED BY RESTRAINED ENERGY MINIMIZATION. This structure was determined using standard 2D homonuclear and heteronuclear techniques. |
| Computation: NMR Software | ||||
|---|---|---|---|---|
| # | Classification | Version | Software Name | Author |
| 1 | processing | NMRPipe | 3 | Delaglio, F., et al. |
| 2 | iterative matrix relaxation | MARDIGRAS | 3.2 | Borgias, B.A:, James, T.L. |
| 3 | structure solution | DYANA | 1.5 | Guentert, P., Mumenthaler, C., Wuetrich, K. |
| 4 | refinement | Amber | 5.0 | Weiner, S.j., Kollman, P.A., Nguyen, D.T., Case, D.A. |
| 5 | data analysis | Amber | 5.0 | Weiner, S.j., Kollman, P.A., Nguyen, D.T., Case, D.A. |
