1JQR
NMR structure of the African swine fever virus DNA polymerase X
SOLUTION NMR
NMR Experiment | ||||||||
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Experiment | Type | Sample Contents | Solvent | Ionic Strength | pH | Pressure | Temperature (K) | Spectrometer |
1 | 3D_13C-separated_NOESY | 0.5 mM or 1 mM protein U-15N,13C; 50 mM borate, 50 mM KCl, 1 mM DTT, 1 mM EDTA | 95% H2O/5% D2O | 50 mM borate, 50 mM KCl, 1 mM DTT, 1 mM EDTA | 7.5 | ambient | 293 | |
2 | 3D_15N-separated_NOESY | 0.5 mM or 1 mM protein U-15N,13C; 50 mM borate, 50 mM KCl, 1 mM DTT, 1 mM EDTA | 95% H2O/5% D2O | 50 mM borate, 50 mM KCl, 1 mM DTT, 1 mM EDTA | 7.5 | ambient | 293 | |
3 | 3D_13C-separated_NOESY | 1 mM protein U-15N,13C; 50 mM borate, 50 mM KCl, 1 mM DTT, 1 mM EDTA | 100% D2O | 50 mM borate, 50 mM KCl, 1 mM DTT, 1 mM EDTA | 7.5 | ambient | 293 |
NMR Spectrometer Information | |||
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Spectrometer | Manufacturer | Model | Field Strength |
1 | Bruker | DRX | 800 |
2 | Bruker | DMX | 600 |
NMR Refinement | ||
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Method | Details | Software |
simulated annealing | The structures are based on a total of 2597 restraints, 2241 are NOE-derived distance restraints, 244 TALOS-derived dihedral angle restraints, and 112 distance restraints from hydrogen bonds. | XwinNMR |
NMR Ensemble Information | |
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Conformer Selection Criteria | structures with the lowest energy |
Conformers Calculated Total Number | 80 |
Conformers Submitted Total Number | 21 |
Representative Model | 1 (minimized average structure) |
Additional NMR Experimental Information | |
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Details | The structure was determined using triple-resonance NMR spectroscopy. |
Computation: NMR Software | ||||
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# | Classification | Version | Software Name | Author |
1 | collection | XwinNMR | 2.6 | BRUKER |
2 | processing | XwinNMR | 2.6 | BRUKER |
3 | structure solution | X-PLOR | 3.851 | Brunger |
4 | refinement | X-PLOR | 3.851 | Brunger |