1JOT

STRUCTURE OF THE LECTIN MPA COMPLEXED WITH T-ANTIGEN DISACCHARIDE


X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, SITTING DROP4.5CONVENTIONAL VAPOR DIFFUSION OF SITTING DROP. 1.0M OF LITHIUM SULFATE BUFFERED WITH 0.2 SODIUM CITRATE AT PH4.5 IN RESERVOIR DROPS MADE OF 15 MICROLITERS OF PROTEIN SOLUTION (10.0 MG/ML) AND EQUAL VOLUMN OF RESERVOIR SOLUTION. ROOM TEMPERATURE., vapor diffusion - sitting drop
Crystal Properties
Matthews coefficientSolvent content
2.8356

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 67.6α = 90
b = 67.6β = 90
c = 149.26γ = 120
Symmetry
Space GroupP 64 2 2

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray300AREA DETECTORXUONG-HAMLIN MULTIWIRE1991-07-26M
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1ROTATING ANODERIGAKU

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
12.23093.99990.0367.849.6101352
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
12.23.99

Refinement

Statistics
Diffraction IDStructure Solution MethodStarting modelResolution (High)Resolution (Low)Cut-off Sigma (F)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTSTRUCTURE OBTAINED FROM MAD2.262963651693.90.1720.1720.222YES
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
RMS Deviations
KeyRefinement Restraint Deviation
x_dihedral_angle_d29.34
x_angle_deg1.302
x_improper_angle_d0.656
x_bond_d0.006
x_bond_d_na
x_bond_d_prot
x_angle_d
x_angle_d_na
x_angle_d_prot
x_angle_deg_na
RMS Deviations
KeyRefinement Restraint Deviation
x_dihedral_angle_d29.34
x_angle_deg1.302
x_improper_angle_d0.656
x_bond_d0.006
x_bond_d_na
x_bond_d_prot
x_angle_d
x_angle_d_na
x_angle_d_prot
x_angle_deg_na
x_angle_deg_prot
x_dihedral_angle_d_na
x_dihedral_angle_d_prot
x_improper_angle_d_na
x_improper_angle_d_prot
x_mcbond_it
x_mcangle_it
x_scbond_it
x_scangle_it
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms1166
Nucleic Acid Atoms
Solvent Atoms91
Heterogen Atoms26

Software

Software
Software NamePurpose
X-PLORmodel building
X-PLORrefinement
SOFTWAREdata reduction
HAMLINdata scaling
X-PLORphasing