1JNF

Rabbit serum transferrin at 2.6 A resolution.


X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1Batch crystallisation5.42790.01M Tris/HCl, acetic acid or HCl, pH 5.4, Batch crystallisation, temperature 279K
Crystal Properties
Matthews coefficientSolvent content
3.6867

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 127.19α = 90
b = 127.19β = 90
c = 144.85γ = 90
Symmetry
Space GroupP 43 21 2

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray277IMAGE PLATEMARRESEARCHPt-coated quartz1993-12-01MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONSRS BEAMLINE PX9.60.87SRSPX9.6

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
12.63097.70.0579.95.6363233632357.8
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
2.62.6785.60.2482.72.72290

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (All)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (All)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONTHROUGHOUTStructure at 3.3 A determined by MIR2.6303443334433180897.610.1870.1870.1850.223RANDOM44.391
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
-0.58-0.581.16
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_3_deg22.107
r_dihedral_angle_1_deg4.7
r_scangle_it4.632
r_scbond_it2.704
r_mcangle_it2.016
r_angle_refined_deg1.942
r_mcbond_it1.077
r_angle_other_deg0.933
r_nbd_refined0.254
r_nbd_other0.235
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_3_deg22.107
r_dihedral_angle_1_deg4.7
r_scangle_it4.632
r_scbond_it2.704
r_mcangle_it2.016
r_angle_refined_deg1.942
r_mcbond_it1.077
r_angle_other_deg0.933
r_nbd_refined0.254
r_nbd_other0.235
r_symmetry_hbond_refined0.213
r_symmetry_vdw_other0.2
r_xyhbond_nbd_refined0.178
r_xyhbond_nbd_other0.164
r_chiral_restr0.121
r_symmetry_vdw_refined0.099
r_bond_refined_d0.02
r_gen_planes_refined0.008
r_gen_planes_other0.003
r_bond_other_d0.001
r_nbtor_other
r_symmetry_hbond_other
r_rigid_bond_restr
r_sphericity_free
r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms5216
Nucleic Acid Atoms
Solvent Atoms206
Heterogen Atoms11

Software

Software
Software NamePurpose
MOSFLMdata reduction
ROTAVATAdata reduction
MLPHAREphasing
REFMACrefinement
CCP4data scaling
ROTAVATAdata scaling