1IYC
Solution structure of antifungal peptide, scarabaecin
SOLUTION NMR
NMR Experiment | ||||||||
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Experiment | Type | Sample Contents | Solvent | Ionic Strength | pH | Pressure | Temperature (K) | Spectrometer |
1 | NOESY | 3mM Scarabaecin; 90% H2O, 10% D2O | 90% H2O/10% D2O | 2.4 | ambient | 298 | ||
2 | DQF-COSY | 3mM Scarabaecin; 90% H2O, 10% D2O | 90% H2O/10% D2O | 2.4 | ambient | 298 | ||
3 | E-COSY | 3mM Scarabaecin; 90% H2O, 10% D2O | 90% H2O/10% D2O | 2.4 | ambient | 298 | ||
4 | TOCSY | 3mM Scarabaecin; 90% H2O, 10% D2O | 90% H2O/10% D2O | 2.4 | ambient | 298 | ||
5 | ROESY | 3mM Scarabaecin; 90% H2O, 10% D2O | 90% H2O/10% D2O | 2.4 | ambient | 298 |
NMR Spectrometer Information | |||
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Spectrometer | Manufacturer | Model | Field Strength |
1 | Bruker | AVANCE | 500 |
2 | Bruker | AVANCE | 800 |
NMR Refinement | ||
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Method | Details | Software |
distance geometry, simulated annealing | XwinNMR |
NMR Ensemble Information | |
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Conformer Selection Criteria | structures with the lowest energy |
Conformers Calculated Total Number | 200 |
Conformers Submitted Total Number | 20 |
Representative Model | 2 (lowest energy) |
Additional NMR Experimental Information | |
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Details | This structure was determined using standard 2D homonuclear techniques. |
Computation: NMR Software | ||||
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# | Classification | Version | Software Name | Author |
1 | collection | XwinNMR | 2.6 | Bruker |
2 | data analysis | Sparky | 3.105 | Goddard and Kneller |
3 | processing | Felix | 2000 | MSI |
4 | refinement | X-PLOR | 3.851 | Brunger |