1FYI
11-MER DNA DUPLEX CONTAINING A 2'-DEOXYARISTEROMYCIN 8-OXO-GUANINE BASE PAIR;
SOLUTION NMR
NMR Experiment | ||||||||
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Experiment | Type | Sample Contents | Solvent | Ionic Strength | pH | Pressure | Temperature (K) | Spectrometer |
1 | 2D NOESY | 280 OD260 in 0.6 ml of 50 mM phosphate buffer, pH 6.8 | 90% H2O/10% D2O | 50mM | 6.8 | 1 atm | 284 | |
2 | 2D NOESY | 280 OD260 in 0.6 ml of 50 mM phosphate buffer, pH 6.8 | 99.6% D2O | 50mM | 6.8 | 1 atm | 298 | |
3 | DQF-COSY | 280 OD260 in 0.6 ml of 50 mM phosphate buffer, pH 6.8 | 99.6% D2O | 50mM | 6.8 | 1 atm | 298 | |
4 | TOCSY | 280 OD260 in 0.6 ml of 50 mM phosphate buffer, pH 6.8 | 99.6% D2O | 50mM | 6.8 | 1 atm | 298 |
NMR Spectrometer Information | |||
---|---|---|---|
Spectrometer | Manufacturer | Model | Field Strength |
1 | Varian | UNITYPLUS | 500 |
2 | Varian | UNITYPLUS | 600 |
NMR Refinement | ||
---|---|---|
Method | Details | Software |
restrained molecular dynamics | VNMR |
NMR Ensemble Information | |
---|---|
Conformer Selection Criteria | target function |
Conformers Calculated Total Number | 15 |
Conformers Submitted Total Number | 9 |
Representative Model | 4 (closest to the average) |
Computation: NMR Software | ||||
---|---|---|---|---|
# | Classification | Version | Software Name | Author |
1 | collection | VNMR | 5 | Varian Co. |
2 | data analysis | Felix | 95 | MSI Co. |
3 | refinement | X-PLOR | 3.8 | A. Brunger |