1EQ8

THREE-DIMENSIONAL STRUCTURE OF THE PENTAMERIC HELICAL BUNDLE OF THE ACETYLCHOLINE RECEPTOR M2 TRANSMEMBRANE SEGMENT


SOLID-STATE NMR
NMR Experiment
ExperimentTypeSample ContentsSolventIonic StrengthpHPressureTemperature (K)Spectrometer
1HSQC; HNCA; HNCOCA; 3D 15N- and 13C-edited NOESY; 3D 15N- and 13C-edited TOCSY; 3D HNHA1mM M2 U-15N; 350mM DPC; pH5.5;90% H2O/10% D2O5.5ambient303
21D CPMOIST; 2D 1H/1H-15N PISEMA; 2D 1H/15N HETCOR;20mg M2 U-15N; 40mg DMPC;DMPC bilayers in H2O;5.5ambient298
NMR Spectrometer Information
SpectrometerManufacturerModelField Strength
1BrukerDMX750
2BrukerDMX600
3ChemagneticsCMX400
NMR Refinement
MethodDetailsSoftware
X-PLOR 3.1, distance geometry, simulated annealing, molecular dynamics, FISI, FINGERPRINT, HOLEThe backbone coordinates obtained from solution NMR were superimposed on the coordinates obtained from solid-state NMR to fix the helix orientation and rotation in the membrane. The pentameric array was then optimized using molecular dynamics. Pore contours were calculated with the program HOLE.X-PLOR
NMR Ensemble Information
Conformer Selection Criteriastructures with favorable non-bond energy
Conformers Calculated Total Number30
Conformers Submitted Total Number1
Representative Model (minimized average structure)
Additional NMR Experimental Information
DetailsThe orientation of each monomer in the pentameric bundle was obtained from the combination of the solution NMR (PDB file 1a11) and solid-state NMR (PDB file 1cek) structures
Computation: NMR Software
#ClassificationVersionSoftware NameAuthor
1refinementX-PLOR3.01Brunger
2structure solutionFISI1.01Marassi
3structure solutionHOLESmart, Goodfellow, Wallace
4data analysisFelix95