1BXX

MU2 ADAPTIN SUBUNIT (AP50) OF AP2 ADAPTOR (SECOND DOMAIN), COMPLEXED WITH TGN38 INTERNALIZATION PEPTIDE DYQRLN


X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, HANGING DROP7.1289HANGING DROP, 2.2M NACL, 0.4M NA/K PHOSPHATE, 10MM DTT 0.1M MES PH 7.1, 15% GLYCEROL, 16DEGREES, MOLAR RATIO OF PEPTIDE TO PROTEIN 3:1, vapor diffusion - hanging drop, temperature 289K
Crystal Properties
Matthews coefficientSolvent content
4.9875.3

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 125.26α = 90
b = 125.26β = 90
c = 73.79γ = 120
Symmetry
Space GroupP 64

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100CCDADSCMIRROR1998-09-12MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONSRS BEAMLINE PX9.6SRSPX9.6

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)R Sym I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
12.72299.80.1010.10123.515.818413478
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)R-Sym I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
2.72.8599.80.99999990.999992.214.7

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUT1BW82.7221841380198.40.2820.2630.325RANDOM78
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
RMS Deviations
KeyRefinement Restraint Deviation
p_transverse_tor24.1
p_staggered_tor17.6
p_scangle_it5.3
p_scbond_it3.8
p_mcangle_it3.1
p_mcbond_it1.8
p_planar_tor1.7
p_multtor_nbd0.252
p_singtor_nbd0.198
p_xyhbond_nbd0.189
RMS Deviations
KeyRefinement Restraint Deviation
p_transverse_tor24.1
p_staggered_tor17.6
p_scangle_it5.3
p_scbond_it3.8
p_mcangle_it3.1
p_mcbond_it1.8
p_planar_tor1.7
p_multtor_nbd0.252
p_singtor_nbd0.198
p_xyhbond_nbd0.189
p_chiral_restr0.122
p_angle_d0.04
p_planar_d0.038
p_bond_d0.012
p_plane_restr0.0025
p_xhyhbond_nbd
p_hb_or_metal_coord
p_orthonormal_tor
p_angle_deg
p_special_tor
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms2093
Nucleic Acid Atoms
Solvent Atoms49
Heterogen Atoms

Software

Software
Software NamePurpose
REFMACrefinement
MOSFLMdata reduction
CCP4data scaling