1BW8

MU2 ADAPTIN SUBUNIT (AP50) OF AP2 ADAPTOR (SECOND DOMAIN), COMPLEXED WITH EGFR INTERNALIZATION PEPTIDE FYRALM


X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, HANGING DROP7.1HANGING DROP, 2.2M NACL, 0.4M NA/K PHOSPHATE, 10MM DTT 0.1M MES PH 7.1, 15% GLYCEROL, 16DEGREES, MOLAR RATIO OF PEPTIDE TO PROTEIN 3:1, vapor diffusion - hanging drop
Crystal Properties
Matthews coefficientSolvent content
4.4572.33

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 125.68α = 90
b = 125.68β = 90
c = 73.16γ = 120
Symmetry
Space GroupP 64

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray105IMAGE PLATEMAR scanner 300 mm plateMIRROR1998-05-15MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONSRS BEAMLINE PX7.2SRSPX7.2

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)R Sym I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
12.6535990.0940.09421.39.2119506482
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)R-Sym I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
2.652.79970.8820.8822.18.1

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMIRTHROUGHOUT2.65351929684299.60.2720.250.296RANDOM60
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
1.250.631.251.111
RMS Deviations
KeyRefinement Restraint Deviation
p_transverse_tor22.5
p_staggered_tor18.6
p_scangle_it4.8
p_scbond_it3.4
p_mcangle_it2.8
p_planar_tor1.7
p_mcbond_it1.6
p_multtor_nbd0.25
p_singtor_nbd0.198
p_xyhbond_nbd0.185
RMS Deviations
KeyRefinement Restraint Deviation
p_transverse_tor22.5
p_staggered_tor18.6
p_scangle_it4.8
p_scbond_it3.4
p_mcangle_it2.8
p_planar_tor1.7
p_mcbond_it1.6
p_multtor_nbd0.25
p_singtor_nbd0.198
p_xyhbond_nbd0.185
p_chiral_restr0.119
p_angle_d0.038
p_planar_d0.035
p_bond_d0.01
p_plane_restr0.0026
p_xhyhbond_nbd
p_hb_or_metal_coord
p_orthonormal_tor
p_angle_deg
p_special_tor
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms2092
Nucleic Acid Atoms
Solvent Atoms51
Heterogen Atoms

Software

Software
Software NamePurpose
SHARPphasing
SOLOMONphasing
REFMACrefinement
MOSFLMdata reduction
CCP4data scaling