1B52

OLIGO-PEPTIDE BINDING PROTEIN (OPPA) COMPLEXED WITH KTK


X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
15.5CO-CRYSTALLIZED WITH URANIUM ACETATE, PH 5.5
Crystal Properties
Matthews coefficientSolvent content
2.3945

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 106.351α = 90
b = 76.798β = 90
c = 69.474γ = 90
Symmetry
Space GroupP 21 21 2 A

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray293IMAGE PLATERIGAKUMIRRORSMSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
12.31598.50.0885.72544838.6
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
2.32.3490.80.41533.7

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-WorkR-FreeMean Isotropic B
X-RAY DIFFRACTIONOTHERTHROUGHOUTPDB ENTRY 1OLB2.31525448128898.50.19510.26355.4
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
RMS Deviations
KeyRefinement Restraint Deviation
p_transverse_tor30
p_staggered_tor20.1
p_planar_tor4.8
p_scangle_it4.496
p_mcangle_it3.837
p_scbond_it3.015
p_mcbond_it2.598
p_multtor_nbd0.268
p_singtor_nbd0.195
p_xyhbond_nbd0.188
RMS Deviations
KeyRefinement Restraint Deviation
p_transverse_tor30
p_staggered_tor20.1
p_planar_tor4.8
p_scangle_it4.496
p_mcangle_it3.837
p_scbond_it3.015
p_mcbond_it2.598
p_multtor_nbd0.268
p_singtor_nbd0.195
p_xyhbond_nbd0.188
p_planar_d0.055
p_angle_d0.051
p_bond_d0.023
p_angle_deg
p_hb_or_metal_coord
p_plane_restr
p_chiral_restr
p_xhyhbond_nbd
p_orthonormal_tor
p_special_tor
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms4174
Nucleic Acid Atoms
Solvent Atoms125
Heterogen Atoms2

Software

Software
Software NamePurpose
DENZOdata reduction
SCALEPACKdata scaling
CCP4model building
REFMACrefinement
CCP4phasing