1B3L

OLIGO-PEPTIDE BINDING PROTEIN (OPPA) COMPLEXED WITH KGK


X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
15.5CO-CRYSTALLIZED WITH URANIUM ACETATE, PH 5.5
Crystal Properties
Matthews coefficientSolvent content
2.2940

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 69.91α = 90
b = 74.8β = 91.1
c = 103.77γ = 90
Symmetry
Space GroupP 1 21 1

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray120IMAGE PLATEMARRESEARCHMIRRORSMSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
121596.20.0876.64.34041120.1
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
22.1280.30.1883.44.2

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-WorkR-FreeMean Isotropic B
X-RAY DIFFRACTIONOTHERTHROUGHOUTPDB ENTRY 1OLB21572216215494.80.1780.24129.1
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
RMS Deviations
KeyRefinement Restraint Deviation
p_transverse_tor29.4
p_staggered_tor17.8
p_planar_tor4
p_scangle_it3.526
p_mcangle_it2.649
p_scbond_it2.348
p_mcbond_it1.886
p_multtor_nbd0.255
p_singtor_nbd0.177
p_xyhbond_nbd0.154
RMS Deviations
KeyRefinement Restraint Deviation
p_transverse_tor29.4
p_staggered_tor17.8
p_planar_tor4
p_scangle_it3.526
p_mcangle_it2.649
p_scbond_it2.348
p_mcbond_it1.886
p_multtor_nbd0.255
p_singtor_nbd0.177
p_xyhbond_nbd0.154
p_planar_d0.039
p_angle_d0.035
p_bond_d0.016
p_angle_deg
p_hb_or_metal_coord
p_plane_restr
p_chiral_restr
p_xhyhbond_nbd
p_orthonormal_tor
p_special_tor
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms8390
Nucleic Acid Atoms
Solvent Atoms339
Heterogen Atoms1

Software

Software
Software NamePurpose
DENZOdata reduction
SCALAdata scaling
CCP4model building
REFMACrefinement
CCP4data scaling
CCP4phasing