167D

THE CRYSTAL STRUCTURE OF C-C-A-T-T-A-A-T-G-G: IMPLICATIONS FOR BENDING OF B-DNA AT T-A STEPS


X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, SITTING DROP277VAPOR DIFFUSION, SITTING DROP, temperature 277.00K
Crystal Properties
Matthews coefficientSolvent content
2.5150.99

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 33.2α = 90
b = 33.2β = 90
c = 96.04γ = 120
Symmetry
Space GroupP 32 2 1

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray277IMAGE PLATERIGAKU RAXIS II
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
12.327262

Refinement

Statistics
Diffraction IDStructure Solution MethodResolution (High)Resolution (Low)Cut-off Sigma (F)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeMean Isotropic B
X-RAY DIFFRACTION2.38227260.2
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
RMS Deviations
KeyRefinement Restraint Deviation
n_sugar_angle_it8.069
n_phos_angle_it7.943
n_sugar_bond_it6.612
n_phos_bond_it6.32
n_chiral_restr0.177
n_singtor_nbd0.104
n_multtor_nbd0.1
n_phos_bond_angle_d0.09
n_sugar_bond_angle_d0.058
n_phos_bond_d0.035
RMS Deviations
KeyRefinement Restraint Deviation
n_sugar_angle_it8.069
n_phos_angle_it7.943
n_sugar_bond_it6.612
n_phos_bond_it6.32
n_chiral_restr0.177
n_singtor_nbd0.104
n_multtor_nbd0.1
n_phos_bond_angle_d0.09
n_sugar_bond_angle_d0.058
n_phos_bond_d0.035
n_sugar_bond_d0.031
n_plane_restr0.02
n_bond_d
n_angle_d
n_planar_d
n_hb_or_metal_coord
n_bond_angle_restr
n_dihedral_angle_restr
n_impr_tor
n_xhyhbond_nbd
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms
Nucleic Acid Atoms404
Solvent Atoms44
Heterogen Atoms

Software

Software
Software NamePurpose
NUCLSQrefinement