8XQB

Mature virion portal vertex of bacteriophage lambda

External Resource: Annotation

Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
BA [auth U4], D [auth U], HA [auth U5], J [auth U1], P [auth U2], BA [auth U4], D [auth U], HA [auth U5], J [auth U1], P [auth U2], V [auth U3]	PF06141	Phage minor tail protein U (Phage_tail_U)	Phage minor tail protein U	-	Family
CA [auth B4], DA [auth b4], E [auth B], F [auth b], IA [auth B5], CA [auth B4], DA [auth b4], E [auth B], F [auth b], IA [auth B5], JA [auth b5], K [auth B1], L [auth b1], Q [auth B2], R [auth b2], W [auth B3], X [auth b3]	PF05136	Phage portal protein, lambda family (Phage_portal_2)	Phage portal protein, lambda family	-	Family
AB [auth C2], FB [auth A3], GB [auth G3], HB [auth C3], KA [auth A0], AB [auth C2], FB [auth A3], GB [auth G3], HB [auth C3], KA [auth A0], LA [auth G0], MA [auth C0], MB [auth A4], NB [auth G4], OB [auth C4], RA [auth A1], SA [auth G1], TA [auth C1], YA [auth A2], ZA [auth G2]	PF03864	Phage major capsid protein E (Phage_cap_E)	Phage major capsid protein E	-	Family
BB [auth H2], CB [auth I2], DB [auth J2], EB [auth N2], IB [auth H3], BB [auth H2], CB [auth I2], DB [auth J2], EB [auth N2], IB [auth H3], JB [auth I3], KB [auth J3], LB [auth N3], NA [auth H0], OA [auth I0], PA [auth J0], PB [auth H4], QA [auth N0], QB [auth I4], RB [auth J4], SB [auth N4], UA [auth H1], VA [auth I1], WA [auth J1], XA [auth N1]	PF02924	Bacteriophage lambda head decoration protein D (HDPD)	Bacteriophage lambda head decoration protein D	-	Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A [auth f], EA [auth f5], G [auth f1], M [auth f2], S [auth f3], A [auth f], EA [auth f5], G [auth f1], M [auth f2], S [auth f3], Y [auth f4]	Head-tail connector protein FII	-	virion assembly viral process viral life cycle	virion component host cellular component host intracellular part host cell cytoplasm host cell part host intracellular region cellular anatomical entity
AA [auth w4], B [auth W], C [auth w], FA [auth W5], GA [auth w5], AA [auth w4], B [auth W], C [auth w], FA [auth W5], GA [auth w5], H [auth W1], I [auth w1], N [auth W2], O [auth w2], T [auth W3], U [auth w3], Z [auth W4]	Head completion protein	-	viral process viral life cycle	virion component
BA [auth U4], D [auth U], HA [auth U5], J [auth U1], P [auth U2], BA [auth U4], D [auth U], HA [auth U5], J [auth U1], P [auth U2], V [auth U3]	Tail tube terminator protein	-	symbiont genome ejection through host cell envelope biological process involved in interspecies interaction between organisms symbiont genome ejection through host cell envelope, long flexible tail mechanism symbiont entry into host cell viral process symbiont entry into host viral life cycle biological process involved in interaction with host biological process involved in symbiotic interaction virion assembly viral tail assembly	host cellular component host intracellular part host cell cytoplasm host cell part host intracellular region cellular anatomical entity virus tail virion component
CA [auth B4], DA [auth b4], E [auth B], F [auth b], IA [auth B5], CA [auth B4], DA [auth b4], E [auth B], F [auth b], IA [auth B5], JA [auth b5], K [auth B1], L [auth b1], Q [auth B2], R [auth b2], W [auth B3], X [auth b3]	Portal protein B	DNA binding binding organic cyclic compound binding nucleic acid binding structural molecule activity	symbiont genome ejection through host cell envelope biological process involved in interspecies interaction between organisms symbiont genome ejection through host cell envelope, long flexible tail mechanism symbiont entry into host cell viral process symbiont entry into host viral life cycle biological process involved in interaction with host biological process involved in symbiotic interaction virion assembly	protein-containing complex viral capsid virion component viral portal complex
AB [auth C2], FB [auth A3], GB [auth G3], HB [auth C3], KA [auth A0], AB [auth C2], FB [auth A3], GB [auth G3], HB [auth C3], KA [auth A0], LA [auth G0], MA [auth C0], MB [auth A4], NB [auth G4], OB [auth C4], RA [auth A1], SA [auth G1], TA [auth C1], YA [auth A2], ZA [auth G2]	Major capsid protein	-	-	viral capsid icosahedral viral capsid T=7 icosahedral viral capsid virion component host cellular component host intracellular part host cell cytoplasm host cell part host intracellular region cellular anatomical entity
BB [auth H2], CB [auth I2], DB [auth J2], EB [auth N2], IB [auth H3], BB [auth H2], CB [auth I2], DB [auth J2], EB [auth N2], IB [auth H3], JB [auth I3], KB [auth J3], LB [auth N3], NA [auth H0], OA [auth I0], PA [auth J0], PB [auth H4], QA [auth N0], QB [auth I4], RB [auth J4], SB [auth N4], UA [auth H1], VA [auth I1], WA [auth J1], XA [auth N1]	Capsid decoration protein	-	virion assembly viral process viral life cycle viral genome packaging viral DNA genome packaging	viral capsid virion component viral capsid, decoration host cellular component host intracellular part host cell cytoplasm host cell part host intracellular region cellular anatomical entity

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A [auth f], EA [auth f5], G [auth f1], M [auth f2], S [auth f3], A [auth f], EA [auth f5], G [auth f1], M [auth f2], S [auth f3], Y [auth f4]	IPR008018	Bacteriophage tail attachment protein FII	Family
AA [auth w4], B [auth W], C [auth w], FA [auth W5], GA [auth w5], AA [auth w4], B [auth W], C [auth w], FA [auth W5], GA [auth w5], H [auth W1], I [auth w1], N [auth W2], O [auth w2], T [auth W3], U [auth w3], Z [auth W4]	IPR036626	Head-to-tail joining protein W superfamily	Homologous Superfamily
AA [auth w4], B [auth W], C [auth w], FA [auth W5], GA [auth w5], AA [auth w4], B [auth W], C [auth w], FA [auth W5], GA [auth w5], H [auth W1], I [auth w1], N [auth W2], O [auth w2], T [auth W3], U [auth w3], Z [auth W4]	IPR004174	Head-to-tail joining protein W	Family
BA [auth U4], D [auth U], HA [auth U5], J [auth U1], P [auth U2], BA [auth U4], D [auth U], HA [auth U5], J [auth U1], P [auth U2], V [auth U3]	IPR035934	Phage tail protein-like superfamily	Homologous Superfamily
BA [auth U4], D [auth U], HA [auth U5], J [auth U1], P [auth U2], BA [auth U4], D [auth U], HA [auth U5], J [auth U1], P [auth U2], V [auth U3]	IPR009312	Minor tail protein U-like	Family
BA [auth U4], D [auth U], HA [auth U5], J [auth U1], P [auth U2], BA [auth U4], D [auth U], HA [auth U5], J [auth U1], P [auth U2], V [auth U3]	IPR038512	GpU-like superfamily	Homologous Superfamily
CA [auth B4], DA [auth b4], E [auth B], F [auth b], IA [auth B5], CA [auth B4], DA [auth b4], E [auth B], F [auth b], IA [auth B5], JA [auth b5], K [auth B1], L [auth b1], Q [auth B2], R [auth b2], W [auth B3], X [auth b3]	IPR006429	Phage portal protein, lambda family	Family
AB [auth C2], FB [auth A3], GB [auth G3], HB [auth C3], KA [auth A0], AB [auth C2], FB [auth A3], GB [auth G3], HB [auth C3], KA [auth A0], LA [auth G0], MA [auth C0], MB [auth A4], NB [auth G4], OB [auth C4], RA [auth A1], SA [auth G1], TA [auth C1], YA [auth A2], ZA [auth G2]	IPR005564	Major capsid protein GpE	Family
BB [auth H2], CB [auth I2], DB [auth J2], EB [auth N2], IB [auth H3], BB [auth H2], CB [auth I2], DB [auth J2], EB [auth N2], IB [auth H3], JB [auth I3], KB [auth J3], LB [auth N3], NA [auth H0], OA [auth I0], PA [auth J0], PB [auth H4], QA [auth N0], QB [auth I4], RB [auth J4], SB [auth N4], UA [auth H1], VA [auth I1], WA [auth J1], XA [auth N1]	IPR004195	Head decoration protein D	Family
BB [auth H2], CB [auth I2], DB [auth J2], EB [auth N2], IB [auth H3], BB [auth H2], CB [auth I2], DB [auth J2], EB [auth N2], IB [auth H3], JB [auth I3], KB [auth J3], LB [auth N3], NA [auth H0], OA [auth I0], PA [auth J0], PB [auth H4], QA [auth N0], QB [auth I4], RB [auth J4], SB [auth N4], UA [auth H1], VA [auth I1], WA [auth J1], XA [auth N1]	IPR036630	Head decoration protein D superfamily	Homologous Superfamily

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM133198.