Annotations: 8W52

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A	PF00540	e8w52A1	A: alpha arrays	X: Retroviral matrix proteins (From Topology)	H: Retroviral matrix proteins (From Topology)	T: Retroviral matrix proteins	F: PF00540	ECOD (1.6)
B	PF00540	e8w52B1	A: alpha arrays	X: Retroviral matrix proteins (From Topology)	H: Retroviral matrix proteins (From Topology)	T: Retroviral matrix proteins	F: PF00540	ECOD (1.6)
C	PF00540	e8w52C1	A: alpha arrays	X: Retroviral matrix proteins (From Topology)	H: Retroviral matrix proteins (From Topology)	T: Retroviral matrix proteins	F: PF00540	ECOD (1.6)
D	PF00540	e8w52D1	A: alpha arrays	X: Retroviral matrix proteins (From Topology)	H: Retroviral matrix proteins (From Topology)	T: Retroviral matrix proteins	F: PF00540	ECOD (1.6)
E	PF00540	e8w52E1	A: alpha arrays	X: Retroviral matrix proteins (From Topology)	H: Retroviral matrix proteins (From Topology)	T: Retroviral matrix proteins	F: PF00540	ECOD (1.6)
F	PF00540	e8w52F1	A: alpha arrays	X: Retroviral matrix proteins (From Topology)	H: Retroviral matrix proteins (From Topology)	T: Retroviral matrix proteins	F: PF00540	ECOD (1.6)
G	PF00540	e8w52G1	A: alpha arrays	X: Retroviral matrix proteins (From Topology)	H: Retroviral matrix proteins (From Topology)	T: Retroviral matrix proteins	F: PF00540	ECOD (1.6)
H	PF00540	e8w52H1	A: alpha arrays	X: Retroviral matrix proteins (From Topology)	H: Retroviral matrix proteins (From Topology)	T: Retroviral matrix proteins	F: PF00540	ECOD (1.6)
I	PF00540	e8w52I1	A: alpha arrays	X: Retroviral matrix proteins (From Topology)	H: Retroviral matrix proteins (From Topology)	T: Retroviral matrix proteins	F: PF00540	ECOD (1.6)
J	PF00540	e8w52J1	A: alpha arrays	X: Retroviral matrix proteins (From Topology)	H: Retroviral matrix proteins (From Topology)	T: Retroviral matrix proteins	F: PF00540	ECOD (1.6)
K	PF00540	e8w52K1	A: alpha arrays	X: Retroviral matrix proteins (From Topology)	H: Retroviral matrix proteins (From Topology)	T: Retroviral matrix proteins	F: PF00540	ECOD (1.6)
L	PF00540	e8w52L1	A: alpha arrays	X: Retroviral matrix proteins (From Topology)	H: Retroviral matrix proteins (From Topology)	T: Retroviral matrix proteins	F: PF00540	ECOD (1.6)
M	PF00540	e8w52M1	A: alpha arrays	X: Retroviral matrix proteins (From Topology)	H: Retroviral matrix proteins (From Topology)	T: Retroviral matrix proteins	F: PF00540	ECOD (1.6)
N	PF00540	e8w52N1	A: alpha arrays	X: Retroviral matrix proteins (From Topology)	H: Retroviral matrix proteins (From Topology)	T: Retroviral matrix proteins	F: PF00540	ECOD (1.6)
O	PF00540	e8w52O1	A: alpha arrays	X: Retroviral matrix proteins (From Topology)	H: Retroviral matrix proteins (From Topology)	T: Retroviral matrix proteins	F: PF00540	ECOD (1.6)
P	PF00540	e8w52P1	A: alpha arrays	X: Retroviral matrix proteins (From Topology)	H: Retroviral matrix proteins (From Topology)	T: Retroviral matrix proteins	F: PF00540	ECOD (1.6)

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P	Gag polyprotein	structural molecule activity cation binding transition metal ion binding zinc ion binding ion binding binding metal ion binding small molecule binding RNA binding organic cyclic compound binding nucleic acid binding	virion assembly viral process viral budding viral budding via host ESCRT complex viral life cycle	host intracellular membrane-bounded organelle host cellular component host intracellular part host multivesicular body cellular anatomical entity host cell cytoplasm part host intracellular organelle host cell cytoplasm host cell part host cell late endosome host cell endosome host intracellular region membrane virion component host intracellular membrane-bounded organelle host cellular component host intracellular part host multivesicular body cellular anatomical entity host cell cytoplasm part host intracellular organelle host cell cytoplasm host cell part host cell late endosome host cell endosome host intracellular region membrane virion component virion membrane host cell nucleus host cell plasma membrane host cell membrane viral nucleocapsid viral capsid

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P	IPR000071	Immunodeficiency lentiviral matrix, N-terminal	Domain
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P	IPR045345	Retroviral nucleocapsid Gag protein p24, C-terminal domain	Domain
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P	IPR036875	Zinc finger, CCHC-type superfamily	Homologous Superfamily
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P	IPR001878	Zinc finger, CCHC-type	Domain
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P	IPR008919	Retrovirus capsid, N-terminal	Homologous Superfamily
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P	IPR010999	Retroviral matrix protein	Homologous Superfamily
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P	IPR012344	Matrix protein, lentiviral and alpha-retroviral, N-terminal	Homologous Superfamily
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P	IPR008916	Retrovirus capsid, C-terminal	Homologous Superfamily

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM133198.