8PUB

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A	PF00607	e8pubA1	A: alpha bundles	X: Retrovirus capsid protein	H: Retrovirus capsid protein N-terminal domain (From Topology)	T: Retrovirus capsid protein N-terminal domain	F: PF00607	ECOD (1.6)
B	PF00607	e8pubB1	A: alpha bundles	X: Retrovirus capsid protein	H: Retrovirus capsid protein N-terminal domain (From Topology)	T: Retrovirus capsid protein N-terminal domain	F: PF00607	ECOD (1.6)
C	PF00607	e8pubC1	A: alpha bundles	X: Retrovirus capsid protein	H: Retrovirus capsid protein N-terminal domain (From Topology)	T: Retrovirus capsid protein N-terminal domain	F: PF00607	ECOD (1.6)

Chains	Accession	Name	Description	Comments	Source
A, B, C	PF00607	gag protein p24 N-terminal domain (Gag_p24)	gag protein p24 N-terminal domain	p24 forms inner protein layer of the nucleocapsid. ELISA tests for p24 is the most commonly used method to demonstrate virus replication both in vivo and in vitro.	Domain

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B, C	Gag protein (Fragment)	binding organic cyclic compound binding nucleic acid binding structural molecule activity cation binding transition metal ion binding zinc ion binding ion binding metal ion binding small molecule binding	viral process	viral nucleocapsid viral capsid virion component

Chains	Accession	Name	Type
A, B, C	IPR003139	Delta-retroviral matrix protein	Domain
A, B, C	IPR045345	Retroviral nucleocapsid Gag protein p24, C-terminal domain	Domain
A, B, C	IPR001878	Zinc finger, CCHC-type	Domain
A, B, C	IPR036875	Zinc finger, CCHC-type superfamily	Homologous Superfamily
A, B, C	IPR008919	Retrovirus capsid, N-terminal	Homologous Superfamily
A, B, C	IPR010999	Retroviral matrix protein	Homologous Superfamily
A, B, C	IPR008916	Retrovirus capsid, C-terminal	Homologous Superfamily