8PPV
Intermediate conformer of Pyrococcus abyssi DNA polymerase D (PolD) bound to a primer/template substrate containing three consecutive mismatches
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
B | SCOP2B Superfamily | Two-barrel nucleic acid polymerases | 8055689 | 3001330 | SCOP2B (2022-06-29) |
A | SCOP2B Superfamily | Metallo-dependent phosphatases | 8053389 | 3001067 | SCOP2B (2022-06-29) |
A | SCOP2B Superfamily | Nucleic acid-binding proteins | 8053391 | 3000135 | SCOP2B (2022-06-29) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF03833 | DNA polymerase II large subunit DP2 (PolC_DP2) | DNA polymerase II large subunit DP2 | - | Family | |
PF00149 | Calcineurin-like phosphoesterase (Metallophos) | Calcineurin-like phosphoesterase | This family includes a diverse range of phosphoesterases [1], including protein phosphoserine phosphatases, nucleotidases, sphingomyelin phosphodiesterases and 2'-3' cAMP phosphodiesterases as well as nucleases such as bacterial SbcD Swiss:P13457 or ... | Domain | |
PF02747 | Proliferating cell nuclear antigen, C-terminal domain (PCNA_C) | Proliferating cell nuclear antigen, C-terminal domain | N-terminal and C-terminal domains of PCNA are topologically identical. Three PCNA molecules are tightly associated to form a closed ring encircling duplex DNA. | Domain | |
PF00705 | Proliferating cell nuclear antigen, N-terminal domain (PCNA_N) | Proliferating cell nuclear antigen, N-terminal domain | N-terminal and C-terminal domains of PCNA are topologically identical. Three PCNA molecules are tightly associated to form a closed ring encircling duplex DNA. | Domain | |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
IPR006141 | Intein N-terminal splicing region | PTM | |
IPR016033 | DNA polymerase II large subunit DP2, N-terminal | Domain | |
IPR036844 | Hint domain superfamily | Homologous Superfamily | |
IPR003587 | Hint domain N-terminal | Domain | |
IPR004475 | DNA polymerase II large subunit DP2 | Family | |
IPR030934 | Intein C-terminal splicing region | Domain | |
IPR004843 | Calcineurin-like phosphoesterase domain, ApaH type | Domain | |
IPR012340 | Nucleic acid-binding, OB-fold | Homologous Superfamily | |
IPR011149 | DNA polymerase II small subunit, archaeal | Family | |
IPR024826 | DNA polymerase delta/II small subunit family | Family | |
IPR029052 | Metallo-dependent phosphatase-like | Homologous Superfamily | |
IPR046938 | DNA clamp superfamily | Homologous Superfamily | |
IPR000730 | Proliferating cell nuclear antigen, PCNA | Family | |
IPR022649 | Proliferating cell nuclear antigen, PCNA, C-terminal | Domain | |
IPR022659 | Proliferating cell nuclear antigen, PCNA, conserved site | Conserved Site | |
IPR022648 | Proliferating cell nuclear antigen, PCNA, N-terminal | Domain |