8P09

48S late-stage initiation complex with non methylated mRNA


Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
J [auth H]SCOP2B SuperfamilyRibosomal protein S78095703 3000799 SCOP2B (2022-06-29)
M [auth K]SCOP2B Superfamily50S Ribosomal protein L14-like8053075 3000433 SCOP2B (2022-06-29)
O [auth M]SCOP2B SuperfamilyWinged helix DNA-binding domain8055720 3000034 SCOP2B (2022-06-29)
P [auth N]SCOP2B SuperfamilyNucleic acid-binding proteins8052707 3000135 SCOP2B (2022-06-29)
P [auth N]SCOP2B SuperfamilyRibosomal S17 N-terminal domain-like8052708 3002138 SCOP2B (2022-06-29)
Q [auth O]SCOP2B SuperfamilyL30e-like8063980 3001739 SCOP2B (2022-06-29)
R [auth P]SCOP2B SuperfamilyS15/NS1 RNA-binding domain8052971 3001284 SCOP2B (2022-06-29)
R [auth P]SCOP2B SuperfamilyHomeodomain-like8052970 3000001 SCOP2B (2022-06-29)
S [auth Q]SCOP2B SuperfamilyTranslational machinery components8097824 3000571 SCOP2B (2022-06-29)
U [auth S]SCOP2B SuperfamilyRibosomal protein S5 domain 2-like8082683 3000100 SCOP2B (2022-06-29)
W [auth U]SCOP2B SuperfamilyS13-like H2TH domain8101439 3000053 SCOP2B (2022-06-29)
X [auth V]SCOP2B SuperfamilyWinged helix DNA-binding domain8089322 3000034 SCOP2B (2022-06-29)
Y [auth W]SCOP2B SuperfamilyRibosomal protein S108097814 3001336 SCOP2B (2022-06-29)
Z [auth X]SCOP2B SuperfamilyGlucocorticoid receptor-like (DNA-binding domain)8099376 3000068 SCOP2B (2022-06-29)
AA [auth Y]SCOP2B SuperfamilyRibosomal protein S88079081 3000709 SCOP2B (2022-06-29)
DA [auth b]SCOP2B SuperfamilyGlucocorticoid receptor-like (DNA-binding domain)8053150 3000068 SCOP2B (2022-06-29)
FA [auth d]SCOP2B SuperfamilyNucleic acid-binding proteins8095265 3000135 SCOP2B (2022-06-29)
GA [auth e]SCOP2B SuperfamilyGlucocorticoid receptor-like (DNA-binding domain)8052584 3000068 SCOP2B (2022-06-29)
IA [auth g]SCOP2B SuperfamilyWD40 repeat-like8097816 3001694 SCOP2B (2022-06-29)
JA [auth i]SCOP2B SuperfamilyRibosomal protein S30e-like8053455 3002190 SCOP2B (2022-06-29)
KA [auth j]SCOP2B SuperfamilyNucleic acid-binding proteins8097822 3000135 SCOP2B (2022-06-29)
LA [auth k]SCOP2B SuperfamilyABC transporter-like P-loop ATPases8089861 3002020 SCOP2B (2022-06-29)
LA [auth k]SCOP2B Superfamily4Fe-4S ferredoxins8089857 3000020 SCOP2B (2022-06-29)
LA [auth k]SCOP2B SuperfamilyABC transporter-like P-loop ATPases8089860 3002020 SCOP2B (2022-06-29)
NA [auth n]SCOP2B SuperfamilyWinged helix DNA-binding domain8090991 3000034 SCOP2B (2022-06-29)
E [auth C]SCOP2B SuperfamilySIS domain/Ribosomal protein S2-like8097826 3001397 SCOP2B (2022-06-29)
F [auth D]SCOP2B SuperfamilyRibosomal S3Ae-like8053208 3002166 SCOP2B (2022-06-29)
I [auth G]SCOP2B SuperfamilyNucleic acid-binding proteins8052746 3000135 SCOP2B (2022-06-29)
I [auth G]SCOP2B SuperfamilyAlpha-L RNA-binding motif8052745 3001473 SCOP2B (2022-06-29)
I [auth G]SCOP2B SuperfamilyTranslation proteins SH3-like KOW motif containing domain8052747 3000334 SCOP2B (2022-06-29)

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
A [auth 1]initiator methionylated tRNA---
J [auth H]Ribosomal protein S5
K [auth I]40S ribosomal protein S6
L [auth J]ribosomal protein eS7
M [auth K]40S ribosomal protein S8
N [auth L]40S ribosomal protein S9
O [auth M]40S ribosomal protein eS10 -
P [auth N]40S ribosomal protein S11
Q [auth O]40S ribosomal protein S12
R [auth P]ribosomal protein uS15
S [auth Q]40S ribosomal protein uS11
B [auth 2]18S ribosomal RNA---
T [auth R]40S ribosomal protein uS19
U [auth S]40S ribosomal protein uS9
V [auth T]40S ribosomal protein eS17
W [auth U]40S ribosomal protein uS13
X [auth V]40S ribosomal protein eS19
Y [auth W]40S ribosomal protein uS10
Z [auth X]40S ribosomal protein S21
AA [auth Y]Ribosomal protein S15a
BA [auth Z]40S ribosomal protein S23
CA [auth a]40S ribosomal protein S24
C [auth 3]mRNA---
DA [auth b]40S ribosomal protein S26
EA [auth c]40S ribosomal protein S27
FA [auth d]40S ribosomal protein S28
GA [auth e]40S ribosomal protein S29
HA [auth f]ribosomal protein eS31
IA [auth g]Ribosomal protein RACK1
JA [auth i]40S ribosomal protein S30
KA [auth j]Eukaryotic translation initiation factor 4C -
LA [auth k]ATP binding cassette subfamily E member 1 -
MA [auth l]60S ribosomal protein L41
D [auth A]Eukaryotic translation initiation factor 2 subunit 1 -
NA [auth n]40S ribosomal protein S25
E [auth C]40S ribosomal protein SA
F [auth D]ribosomal protein eS1
G [auth E]40S ribosomal protein S2---
H [auth F]Ribosomal protein S3
I [auth G]40S ribosomal protein S4

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
J [auth H]IPR020606Small ribosomal subunit protein uS7, conserved siteConserved Site
J [auth H]IPR036823Small ribosomal subunit protein uS7 domain superfamilyHomologous Superfamily
J [auth H]IPR000235Small ribosomal subunit protein uS7Family
J [auth H]IPR023798Small ribosomal subunit protein uS7 domainDomain
J [auth H]IPR005716Ribosomal protein uS7, eukaryotic/archaealFamily
K [auth I]IPR014401Small ribosomal subunit protein eS6-likeFamily
K [auth I]IPR001377Small ribosomal subunit protein eS6Family
K [auth I]IPR018282Small ribosomal subunit protein eS6, conserved siteConserved Site
L [auth J]IPR000554Small ribosomal subunit protein eS7Family
L [auth J]IPR047861Small ribosomal subunit protein eS7, conserved siteConserved Site
M [auth K]IPR001047Small ribosomal subunit protein eS8Family
M [auth K]IPR042563Small ribosomal subunit protein eS8 subdomain, eukaryotesHomologous Superfamily
M [auth K]IPR022309Ribosomal protein eS8/ribosomal biogenesis NSA2Family
M [auth K]IPR018283Small ribosomal subunit protein eS8, conserved siteConserved Site
N [auth L]IPR002942RNA-binding S4 domainDomain
N [auth L]IPR022801Small ribosomal subunit protein uS4Family
N [auth L]IPR018079Small ribosomal subunit protein uS4, conserved siteConserved Site
N [auth L]IPR001912Small ribosomal subunit protein uS4, N-terminalDomain
N [auth L]IPR005710Small ribosomal subunit protein uS4, eukaryotic/archaealFamily
N [auth L]IPR036986RNA-binding S4 domain superfamilyHomologous Superfamily
O [auth M]IPR037447Small ribosomal subunit protein eS10Family
O [auth M]IPR036388Winged helix-like DNA-binding domain superfamilyHomologous Superfamily
O [auth M]IPR005326Plectin/eS10, N-terminalDomain
P [auth N]IPR019979Small ribosomal subunit protein uS17, conserved siteConserved Site
P [auth N]IPR012340Nucleic acid-binding, OB-foldHomologous Superfamily
P [auth N]IPR000266Small ribosomal subunit protein uS17Family
P [auth N]IPR032440Small ribosomal subunit protein uS17, N-terminalDomain
P [auth N]IPR028333Small ribosomal subunit protein uS17, archaeal/eukaryoticFamily
Q [auth O]IPR000530Small ribosomal subunit protein eS12Family
Q [auth O]IPR004038Ribosomal protein eL8/eL30/eS12/Gadd45Domain
Q [auth O]IPR047860Small ribosomal subunit protein eS12, conserved siteConserved Site
Q [auth O]IPR029064Ribosomal protein eL30-like superfamilyHomologous Superfamily
R [auth P]IPR012606Small ribosomal subunit protein uS15, N-terminalDomain
R [auth P]IPR009068uS15/NS1, RNA-binding domain superfamilyHomologous Superfamily
R [auth P]IPR023029Small ribosomal subunit protein uS15, archaea/eukaryotesFamily
R [auth P]IPR000589Small ribosomal subunit protein uS15Family
S [auth Q]IPR001971Small ribosomal subunit protein uS11Family
S [auth Q]IPR036967Small ribosomal subunit protein uS11 superfamilyHomologous Superfamily
S [auth Q]IPR018102Small ribosomal subunit protein uS11, conserved siteConserved Site
T [auth R]IPR023575Small ribosomal subunit protein uS19, superfamilyHomologous Superfamily
T [auth R]IPR020934Small ribosomal subunit protein uS19, conserved siteConserved Site
T [auth R]IPR005713Small ribosomal subunit protein uS19, eukaryotic/archaealFamily
T [auth R]IPR002222Small ribosomal subunit protein uS19Family
U [auth S]IPR020574Small ribosomal subunit protein uS9, conserved siteConserved Site
U [auth S]IPR020568Ribosomal protein uS5 domain 2-type superfamilyHomologous Superfamily
U [auth S]IPR000754Small ribosomal subunit protein uS9Family
U [auth S]IPR014721Small ribosomal subunit protein uS5 domain 2-type fold, subgroupHomologous Superfamily
V [auth T]IPR036401Small ribosomal subunit protein eS17 superfamilyHomologous Superfamily
V [auth T]IPR001210Small ribosomal subunit protein eS17Family
V [auth T]IPR018273Small ribosomal subunit protein eS17, conserved siteConserved Site
W [auth U]IPR027437Small ribosomal subunit protein uS13, C-terminalHomologous Superfamily
W [auth U]IPR001892Small ribosomal subunit protein uS13Family
W [auth U]IPR018269Small ribosomal subunit protein uS13, conserved siteConserved Site
W [auth U]IPR010979Small ribosomal subunit protein uS13-like, H2THHomologous Superfamily
X [auth V]IPR001266Small ribosomal subunit protein eS19Family
X [auth V]IPR036388Winged helix-like DNA-binding domain superfamilyHomologous Superfamily
X [auth V]IPR018277Small ribosomal subunit protein eS19, conserved siteConserved Site
X [auth V]IPR036390Winged helix DNA-binding domain superfamilyHomologous Superfamily
Y [auth W]IPR001848Small ribosomal subunit protein uS10Family
Y [auth W]IPR027486Small ribosomal subunit protein uS10 domainDomain
Y [auth W]IPR036838Small ribosomal subunit protein uS10 domain superfamilyHomologous Superfamily
Y [auth W]IPR005729Small ribosomal subunit protein uS10, eukaryotic/archaealFamily
Y [auth W]IPR018268Small ribosomal subunit protein uS10, conserved siteConserved Site
Z [auth X]IPR038579Small ribosomal subunit protein eS21 superfamilyHomologous Superfamily
Z [auth X]IPR018279Small ribosomal subunit protein eS21, conserved siteConserved Site
Z [auth X]IPR001931Small ribosomal subunit protein eS21Family
AA [auth Y]IPR000630Small ribosomal subunit protein uS8Family
AA [auth Y]IPR047863Small ribosomal subunit protein uS8, conserved siteConserved Site
AA [auth Y]IPR035987Small ribosomal subunit protein uS8 superfamilyHomologous Superfamily
BA [auth Z]IPR006032Small ribosomal subunit protein uS12Family
BA [auth Z]IPR012340Nucleic acid-binding, OB-foldHomologous Superfamily
BA [auth Z]IPR005680Small ribosomal subunit protein uS12, eukaryotic/archaealFamily
CA [auth a]IPR001976Small ribosomal subunit protein eS24Family
CA [auth a]IPR012678Ribosomal protein uL23/eL15/eS24 core domain superfamilyHomologous Superfamily
CA [auth a]IPR018098Small ribosomal subunit protein eS24 conserved siteConserved Site
DA [auth b]IPR038551Ribosomal protein eS26 superfamilyHomologous Superfamily
DA [auth b]IPR000892Small ribosomal subunit protein eS26Family
DA [auth b]IPR047864Ribosomal protein eS26, conserved siteConserved Site
EA [auth c]IPR023407Small ribosomal subunit protein eS27, zinc-binding domain superfamilyHomologous Superfamily
EA [auth c]IPR000592Small ribosomal subunit protein eS27Family
EA [auth c]IPR011332Zinc-binding ribosomal proteinHomologous Superfamily
FA [auth d]IPR028626Ribosomal protein eS28 conserved siteConserved Site
FA [auth d]IPR012340Nucleic acid-binding, OB-foldHomologous Superfamily
FA [auth d]IPR000289Small ribosomal subunit protein eS28Family
GA [auth e]IPR001209Small ribosomal subunit protein uS14Family
GA [auth e]IPR018271Small ribosomal subunit protein uS14, conserved siteConserved Site
GA [auth e]IPR039744Small ribosomal subunit protein uS14, eukaryotes/archaeaFamily
GA [auth e]IPR043140Small ribosomal subunit protein uS14 superfamilyHomologous Superfamily
HA [auth f]IPR019954Ubiquitin conserved siteConserved Site
HA [auth f]IPR000626Ubiquitin-like domainDomain
HA [auth f]IPR038582Small ribosomal subunit protein eS31 eukaryotic-type superfamilyHomologous Superfamily
HA [auth f]IPR002906Small ribosomal subunit protein eS31Domain
HA [auth f]IPR019956Ubiquitin domainDomain
HA [auth f]IPR029071Ubiquitin-like domain superfamilyHomologous Superfamily
HA [auth f]IPR011332Zinc-binding ribosomal proteinHomologous Superfamily
IA [auth g]IPR019775WD40 repeat, conserved siteConserved Site
IA [auth g]IPR036322WD40-repeat-containing domain superfamilyHomologous Superfamily
IA [auth g]IPR045223Small ribosomal subunit protein RACK1-likeFamily
IA [auth g]IPR001680WD40 repeatRepeat
IA [auth g]IPR020472G-protein beta WD-40 repeatRepeat
IA [auth g]IPR015943WD40/YVTN repeat-like-containing domain superfamilyHomologous Superfamily
JA [auth i]IPR039415Ubiquitin-like protein FUBIDomain
JA [auth i]IPR019956Ubiquitin domainDomain
JA [auth i]IPR019954Ubiquitin conserved siteConserved Site
JA [auth i]IPR029071Ubiquitin-like domain superfamilyHomologous Superfamily
JA [auth i]IPR000626Ubiquitin-like domainDomain
JA [auth i]IPR006846Small ribosomal subunit protein eS30Family
KA [auth j]IPR018104Translation initiation factor 1A (eIF-1A), conserved siteConserved Site
KA [auth j]IPR012340Nucleic acid-binding, OB-foldHomologous Superfamily
KA [auth j]IPR006196RNA-binding domain, S1, IF1 typeDomain
KA [auth j]IPR001253Translation initiation factor 1A (eIF-1A)Family
LA [auth k]IPR007209RNase L inhibitor RLI-like, possible metal-binding domainDomain
LA [auth k]IPR017871ABC transporter-like, conserved siteConserved Site
LA [auth k]IPR003439ABC transporter-like, ATP-binding domainDomain
LA [auth k]IPR0179004Fe-4S ferredoxin, iron-sulphur binding, conserved siteConserved Site
LA [auth k]IPR003593AAA+ ATPase domainDomain
LA [auth k]IPR0178964Fe-4S ferredoxin-type, iron-sulphur binding domainDomain
LA [auth k]IPR013283RLI1Family
LA [auth k]IPR034348RLI, domain 1Domain
LA [auth k]IPR027417P-loop containing nucleoside triphosphate hydrolaseHomologous Superfamily
MA [auth l]IPR007836Large ribosomal subunit protein eS32Family
D [auth A]IPR003029S1 domainDomain
D [auth A]IPR044126IF2a, S1-like domainDomain
D [auth A]IPR024054Translation initiation factor 2, alpha subunit, middle domain superfamilyHomologous Superfamily
D [auth A]IPR012340Nucleic acid-binding, OB-foldHomologous Superfamily
D [auth A]IPR024055Translation initiation factor 2, alpha subunit, C-terminalHomologous Superfamily
D [auth A]IPR011488Translation initiation factor 2, alpha subunitFamily
NA [auth n]IPR004977Small ribosomal subunit protein eS25Family
NA [auth n]IPR036388Winged helix-like DNA-binding domain superfamilyHomologous Superfamily
E [auth C]IPR032281Small ribosomal subunit protein uS2, C-terminal domainDomain
E [auth C]IPR027504Small ribosomal subunit protein uS2, vertebratesFamily
E [auth C]IPR005707Small ribosomal subunit protein uS2, eukaryotic/archaealFamily
E [auth C]IPR023591Small ribosomal subunit protein uS2, flavodoxin-like domain superfamilyHomologous Superfamily
E [auth C]IPR018130Small ribosomal subunit protein uS2, conserved siteConserved Site
E [auth C]IPR001865Small ribosomal subunit protein uS2Family
E [auth C]IPR027498Small ribosomal subunit protein uS2, eukaryoticFamily
F [auth D]IPR001593Small ribosomal subunit protein eS1Family
F [auth D]IPR018281Small ribosomal subunit protein eS1, conserved siteConserved Site
F [auth D]IPR027500Small ribosomal subunit protein eS1, eukaryotesFamily
H [auth F]IPR009019K homology domain superfamily, prokaryotic typeHomologous Superfamily
H [auth F]IPR004044K Homology domain, type 2Domain
H [auth F]IPR015946K homology domain-like, alpha/betaHomologous Superfamily
H [auth F]IPR001351Small ribosomal subunit protein uS3, C-terminalDomain
H [auth F]IPR036419Ribosomal protein S3, C-terminal domain superfamilyHomologous Superfamily
H [auth F]IPR005703Small ribosomal subunit protein uS3, eukaryotic/archaealFamily
H [auth F]IPR018280Small ribosomal subunit protein uS3, conserved siteConserved Site
I [auth G]IPR018199Small ribosomal subunit protein eS4, N-terminal, conserved siteConserved Site
I [auth G]IPR013843Small ribosomal subunit protein eS4, N-terminalDomain
I [auth G]IPR032277Small ribosomal subunit protein eS4, C-terminal domainDomain
I [auth G]IPR002942RNA-binding S4 domainDomain
I [auth G]IPR013845Small ribosomal subunit protein eS4, central regionDomain
I [auth G]IPR000876Small ribosomal subunit protein eS4Family
I [auth G]IPR014722Large ribosomal subunit protein uL2, domain 2Homologous Superfamily
I [auth G]IPR038237Small ribosomal subunit protein eS4, central domain superfamilyHomologous Superfamily
I [auth G]IPR041982Small ribosomal subunit protein eS4, KOW domainDomain
I [auth G]IPR036986RNA-binding S4 domain superfamilyHomologous Superfamily
I [auth G]IPR005824KOWDomain