8OJB

HSV-1 DNA polymerase-processivity factor complex in exonuclease state active site

External Resource: Annotation

Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
B [auth A]	PF03104	DNA polymerase family B, exonuclease domain (DNA_pol_B_exo1)	DNA polymerase family B, exonuclease domain	-	Family
B [auth A]	PF00136	DNA polymerase family B (DNA_pol_B)	DNA polymerase family B	-	Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A [auth C]	DNA (47-MER)	-	-	-
B [auth A]	DNA polymerase catalytic subunit	DNA exonuclease activity catalytic activity, acting on a nucleic acid 3'-5' exonuclease activity hydrolase activity DNA exonuclease activity, producing 5'-phosphomonoesters DNA nuclease activity exonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters nuclease activity hydrolase activity, acting on ester bonds catalytic activity, acting on DNA 3'-5'-DNA exonuclease activity exonuclease activity catalytic activity DNA-directed DNA polymerase activity DNA exonuclease activity catalytic activity, acting on a nucleic acid 3'-5' exonuclease activity hydrolase activity DNA exonuclease activity, producing 5'-phosphomonoesters DNA nuclease activity exonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters nuclease activity hydrolase activity, acting on ester bonds catalytic activity, acting on DNA 3'-5'-DNA exonuclease activity exonuclease activity catalytic activity DNA-directed DNA polymerase activity DNA polymerase activity transferase activity nucleotidyltransferase activity transferase activity, transferring phosphorus-containing groups DNA binding binding organic cyclic compound binding nucleic acid binding nucleoside phosphate binding nucleotide binding heterocyclic compound binding small molecule binding endonuclease activity RNA endonuclease activity, producing 5'-phosphomonoesters catalytic activity, acting on RNA RNA-DNA hybrid ribonuclease activity RNA nuclease activity RNA endonuclease activity endonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters 5'-3' exonuclease activity	cellular biosynthetic process viral life cycle nucleobase-containing compound metabolic process nucleic acid biosynthetic process organic substance metabolic process organic substance biosynthetic process viral process bidirectional double-stranded viral DNA replication cellular metabolic process viral DNA genome replication primary metabolic process DNA metabolic process nucleobase-containing compound biosynthetic process macromolecule biosynthetic process cellular biosynthetic process viral life cycle nucleobase-containing compound metabolic process nucleic acid biosynthetic process organic substance metabolic process organic substance biosynthetic process viral process bidirectional double-stranded viral DNA replication cellular metabolic process viral DNA genome replication primary metabolic process DNA metabolic process nucleobase-containing compound biosynthetic process macromolecule biosynthetic process nucleic acid metabolic process organic cyclic compound metabolic process biosynthetic process viral genome replication organic cyclic compound biosynthetic process metabolic process cellular process macromolecule metabolic process DNA biosynthetic process cellular response to stimulus response to stimulus nucleotide-excision repair, DNA gap filling cellular response to stress nucleotide-excision repair DNA damage response response to stress DNA repair base-excision repair, gap-filling base-excision repair DNA-templated DNA replication DNA-templated DNA replication maintenance of fidelity DNA replication proofreading DNA replication SOS response	host intracellular membrane-bounded organelle host cellular component host intracellular part host cell part host intracellular region cellular anatomical entity host cell nucleus host intracellular organelle transferase complex, transferring phosphorus-containing groups protein-containing complex catalytic complex transferase complex DNA polymerase complex intracellular protein-containing complex

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
B [auth A]	IPR036397	Ribonuclease H superfamily	Homologous Superfamily
B [auth A]	IPR006134	DNA-directed DNA polymerase, family B, multifunctional domain	Domain
B [auth A]	IPR006172	DNA-directed DNA polymerase, family B	Family
B [auth A]	IPR043502	DNA/RNA polymerase superfamily	Homologous Superfamily
B [auth A]	IPR006133	DNA-directed DNA polymerase, family B, exonuclease domain	Domain
B [auth A]	IPR021639	DNA polymerase catalytic subunit Pol, C-terminal	Domain
B [auth A]	IPR042087	DNA polymerase family B, thumb domain	Homologous Superfamily
B [auth A]	IPR017964	DNA-directed DNA polymerase, family B, conserved site	Conserved Site
B [auth A]	IPR012337	Ribonuclease H-like superfamily	Homologous Superfamily
B [auth A]	IPR023211	DNA polymerase, palm domain superfamily	Homologous Superfamily

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM133198.