8JO0
The Cryo-EM structure of a heptameric CED-4/CED-3 catalytic complex
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
A [auth H] | SCOP2B Superfamily | DEATH domain | 8003077 | 3000069 | SCOP2B (2022-06-29) |
B [auth I] | SCOP2B Superfamily | DEATH domain | 8003077 | 3000069 | SCOP2B (2022-06-29) |
C [auth J] | SCOP2B Superfamily | DEATH domain | 8003077 | 3000069 | SCOP2B (2022-06-29) |
D [auth K] | SCOP2B Superfamily | DEATH domain | 8003077 | 3000069 | SCOP2B (2022-06-29) |
E [auth L] | SCOP2B Superfamily | DEATH domain | 8003077 | 3000069 | SCOP2B (2022-06-29) |
F [auth M] | SCOP2B Superfamily | DEATH domain | 8003077 | 3000069 | SCOP2B (2022-06-29) |
G [auth A] | SCOP2B Superfamily | DNA polymerases epsilon N-terminal domain (Dpoe2NT)-like | 8104155 | 3002834 | SCOP2B (2022-06-29) |
G [auth A] | SCOP2B Superfamily | RecA-like P-loop NTPases | 8003074 | 3002019 | SCOP2B (2022-06-29) |
G [auth A] | SCOP2B Superfamily | Winged helix DNA-binding domain | 8003079 | 3000034 | SCOP2B (2022-06-29) |
H [auth B] | SCOP2B Superfamily | DNA polymerases epsilon N-terminal domain (Dpoe2NT)-like | 8104155 | 3002834 | SCOP2B (2022-06-29) |
H [auth B] | SCOP2B Superfamily | RecA-like P-loop NTPases | 8003074 | 3002019 | SCOP2B (2022-06-29) |
H [auth B] | SCOP2B Superfamily | Winged helix DNA-binding domain | 8003079 | 3000034 | SCOP2B (2022-06-29) |
I [auth C] | SCOP2B Superfamily | DNA polymerases epsilon N-terminal domain (Dpoe2NT)-like | 8104155 | 3002834 | SCOP2B (2022-06-29) |
I [auth C] | SCOP2B Superfamily | Winged helix DNA-binding domain | 8003079 | 3000034 | SCOP2B (2022-06-29) |
I [auth C] | SCOP2B Superfamily | RecA-like P-loop NTPases | 8003074 | 3002019 | SCOP2B (2022-06-29) |
J [auth D] | SCOP2B Superfamily | Winged helix DNA-binding domain | 8003079 | 3000034 | SCOP2B (2022-06-29) |
J [auth D] | SCOP2B Superfamily | RecA-like P-loop NTPases | 8003074 | 3002019 | SCOP2B (2022-06-29) |
J [auth D] | SCOP2B Superfamily | DNA polymerases epsilon N-terminal domain (Dpoe2NT)-like | 8104155 | 3002834 | SCOP2B (2022-06-29) |
K [auth E] | SCOP2B Superfamily | DNA polymerases epsilon N-terminal domain (Dpoe2NT)-like | 8104155 | 3002834 | SCOP2B (2022-06-29) |
K [auth E] | SCOP2B Superfamily | Winged helix DNA-binding domain | 8003079 | 3000034 | SCOP2B (2022-06-29) |
K [auth E] | SCOP2B Superfamily | RecA-like P-loop NTPases | 8003074 | 3002019 | SCOP2B (2022-06-29) |
L [auth F] | SCOP2B Superfamily | Winged helix DNA-binding domain | 8003079 | 3000034 | SCOP2B (2022-06-29) |
L [auth F] | SCOP2B Superfamily | DNA polymerases epsilon N-terminal domain (Dpoe2NT)-like | 8104155 | 3002834 | SCOP2B (2022-06-29) |
L [auth F] | SCOP2B Superfamily | RecA-like P-loop NTPases | 8003074 | 3002019 | SCOP2B (2022-06-29) |
M [auth G] | SCOP2B Superfamily | DNA polymerases epsilon N-terminal domain (Dpoe2NT)-like | 8104155 | 3002834 | SCOP2B (2022-06-29) |
M [auth G] | SCOP2B Superfamily | RecA-like P-loop NTPases | 8003074 | 3002019 | SCOP2B (2022-06-29) |
M [auth G] | SCOP2B Superfamily | Winged helix DNA-binding domain | 8003079 | 3000034 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A [auth H] | PF00619 | e8jo0H1 | A: alpha arrays | X: DEATH domain | H: DEATH domain (From Topology) | T: DEATH domain | F: PF00619 | ECOD (1.6) |
B [auth I] | PF00619 | e8jo0I1 | A: alpha arrays | X: DEATH domain | H: DEATH domain (From Topology) | T: DEATH domain | F: PF00619 | ECOD (1.6) |
C [auth J] | PF00619 | e8jo0J1 | A: alpha arrays | X: DEATH domain | H: DEATH domain (From Topology) | T: DEATH domain | F: PF00619 | ECOD (1.6) |
D [auth K] | PF00619 | e8jo0K1 | A: alpha arrays | X: DEATH domain | H: DEATH domain (From Topology) | T: DEATH domain | F: PF00619 | ECOD (1.6) |
E [auth L] | PF00619 | e8jo0L1 | A: alpha arrays | X: DEATH domain | H: DEATH domain (From Topology) | T: DEATH domain | F: PF00619 | ECOD (1.6) |
F [auth M] | PF00619 | e8jo0M1 | A: alpha arrays | X: DEATH domain | H: DEATH domain (From Topology) | T: DEATH domain | F: PF00619 | ECOD (1.6) |
G [auth A] | PF22094 | e8jo0A1 | A: alpha arrays | X: HTH | H: HTH | T: winged | F: PF22094 | ECOD (1.6) |
G [auth A] | PF00931 | e8jo0A3 | A: alpha arrays | X: Histone-like | H: Histone-related | T: AAA+ ATPase lid domain | F: PF00931 | ECOD (1.6) |
G [auth A] | PF00931 | e8jo0A2 | A: a/b three-layered sandwiches | X: P-loop domains-like | H: P-loop domains-related | T: P-loop containing nucleoside triphosphate hydrolases | F: PF00931 | ECOD (1.6) |
H [auth B] | PF22094 | e8jo0B1 | A: alpha arrays | X: HTH | H: HTH | T: winged | F: PF22094 | ECOD (1.6) |
H [auth B] | PF00931 | e8jo0B2 | A: alpha arrays | X: Histone-like | H: Histone-related | T: AAA+ ATPase lid domain | F: PF00931 | ECOD (1.6) |
H [auth B] | PF00931 | e8jo0B3 | A: a/b three-layered sandwiches | X: P-loop domains-like | H: P-loop domains-related | T: P-loop containing nucleoside triphosphate hydrolases | F: PF00931 | ECOD (1.6) |
I [auth C] | PF22094 | e8jo0C3 | A: alpha arrays | X: HTH | H: HTH | T: winged | F: PF22094 | ECOD (1.6) |
I [auth C] | PF00931 | e8jo0C1 | A: alpha arrays | X: Histone-like | H: Histone-related | T: AAA+ ATPase lid domain | F: PF00931 | ECOD (1.6) |
I [auth C] | PF00931 | e8jo0C2 | A: a/b three-layered sandwiches | X: P-loop domains-like | H: P-loop domains-related | T: P-loop containing nucleoside triphosphate hydrolases | F: PF00931 | ECOD (1.6) |
J [auth D] | PF22094 | e8jo0D2 | A: alpha arrays | X: HTH | H: HTH | T: winged | F: PF22094 | ECOD (1.6) |
J [auth D] | PF00931 | e8jo0D3 | A: alpha arrays | X: Histone-like | H: Histone-related | T: AAA+ ATPase lid domain | F: PF00931 | ECOD (1.6) |
J [auth D] | PF00931 | e8jo0D1 | A: a/b three-layered sandwiches | X: P-loop domains-like | H: P-loop domains-related | T: P-loop containing nucleoside triphosphate hydrolases | F: PF00931 | ECOD (1.6) |
K [auth E] | PF22094 | e8jo0E3 | A: alpha arrays | X: HTH | H: HTH | T: winged | F: PF22094 | ECOD (1.6) |
K [auth E] | PF00931 | e8jo0E2 | A: alpha arrays | X: Histone-like | H: Histone-related | T: AAA+ ATPase lid domain | F: PF00931 | ECOD (1.6) |
K [auth E] | PF00931 | e8jo0E1 | A: a/b three-layered sandwiches | X: P-loop domains-like | H: P-loop domains-related | T: P-loop containing nucleoside triphosphate hydrolases | F: PF00931 | ECOD (1.6) |
L [auth F] | PF22094 | e8jo0F3 | A: alpha arrays | X: HTH | H: HTH | T: winged | F: PF22094 | ECOD (1.6) |
L [auth F] | PF00931 | e8jo0F2 | A: alpha arrays | X: Histone-like | H: Histone-related | T: AAA+ ATPase lid domain | F: PF00931 | ECOD (1.6) |
L [auth F] | PF00931 | e8jo0F1 | A: a/b three-layered sandwiches | X: P-loop domains-like | H: P-loop domains-related | T: P-loop containing nucleoside triphosphate hydrolases | F: PF00931 | ECOD (1.6) |
M [auth G] | PF22094 | e8jo0G1 | A: alpha arrays | X: HTH | H: HTH | T: winged | F: PF22094 | ECOD (1.6) |
M [auth G] | PF00931 | e8jo0G2 | A: alpha arrays | X: Histone-like | H: Histone-related | T: AAA+ ATPase lid domain | F: PF00931 | ECOD (1.6) |
M [auth G] | PF00931 | e8jo0G3 | A: a/b three-layered sandwiches | X: P-loop domains-like | H: P-loop domains-related | T: P-loop containing nucleoside triphosphate hydrolases | F: PF00931 | ECOD (1.6) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF00619 | Caspase recruitment domain (CARD) | Caspase recruitment domain | Motif contained in proteins involved in apoptotic signaling. Predicted to possess a DEATH (Pfam:PF00531) domain-like fold . | Domain | |
PF00931 | NB-ARC domain (NB-ARC) | NB-ARC domain | - | Domain |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
IPR002182 | NB-ARC | Domain | |
IPR027417 | P-loop containing nucleoside triphosphate hydrolase | Homologous Superfamily | |
IPR011029 | Death-like domain superfamily | Homologous Superfamily | |
IPR036388 | Winged helix-like DNA-binding domain superfamily | Homologous Superfamily | |
IPR036390 | Winged helix DNA-binding domain superfamily | Homologous Superfamily | |
IPR016854 | Apoptosis regulator, Ced-4 | Family | |
IPR001315 | CARD domain | Domain | |
IPR002182 | NB-ARC | Domain | |
IPR027417 | P-loop containing nucleoside triphosphate hydrolase | Homologous Superfamily | |
IPR011029 | Death-like domain superfamily | Homologous Superfamily | |
IPR036388 | Winged helix-like DNA-binding domain superfamily | Homologous Superfamily | |
IPR036390 | Winged helix DNA-binding domain superfamily | Homologous Superfamily | |
IPR016854 | Apoptosis regulator, Ced-4 | Family | |
IPR001315 | CARD domain | Domain |