8EAO

Cryo-EM structure of the in-situ gp1-gp4 complex from bacteriophage P22

External Resource: Annotation

Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
I	SCOP2B Superfamily	YqbG/phage connector protein-like	8104062	3001980	SCOP2B (2022-06-29)
Q	SCOP2B Superfamily	YqbG/phage connector protein-like	8104062	3001980	SCOP2B (2022-06-29)
W	SCOP2B Superfamily	YqbG/phage connector protein-like	8104062	3001980	SCOP2B (2022-06-29)
A	SCOP2B Superfamily	YqbG/phage connector protein-like	8104062	3001980	SCOP2B (2022-06-29)
C	SCOP2B Superfamily	YqbG/phage connector protein-like	8104062	3001980	SCOP2B (2022-06-29)
E	SCOP2B Superfamily	YqbG/phage connector protein-like	8104062	3001980	SCOP2B (2022-06-29)
G	SCOP2B Superfamily	YqbG/phage connector protein-like	8104062	3001980	SCOP2B (2022-06-29)
K	SCOP2B Superfamily	YqbG/phage connector protein-like	8104062	3001980	SCOP2B (2022-06-29)
M	SCOP2B Superfamily	YqbG/phage connector protein-like	8104062	3001980	SCOP2B (2022-06-29)
O	SCOP2B Superfamily	YqbG/phage connector protein-like	8104062	3001980	SCOP2B (2022-06-29)
S	SCOP2B Superfamily	YqbG/phage connector protein-like	8104062	3001980	SCOP2B (2022-06-29)
U	SCOP2B Superfamily	YqbG/phage connector protein-like	8104062	3001980	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
I	PF11650	e8eaoI1	A: alpha arrays	X: Hypothetical protein YqbG-like (From Topology)	H: Hypothetical protein YqbG-like (From Topology)	T: Hypothetical protein YqbG-like	F: PF11650	ECOD (1.6)
Q	PF11650	e8eaoQ1	A: alpha arrays	X: Hypothetical protein YqbG-like (From Topology)	H: Hypothetical protein YqbG-like (From Topology)	T: Hypothetical protein YqbG-like	F: PF11650	ECOD (1.6)
W	PF11650	e8eaoW1	A: alpha arrays	X: Hypothetical protein YqbG-like (From Topology)	H: Hypothetical protein YqbG-like (From Topology)	T: Hypothetical protein YqbG-like	F: PF11650	ECOD (1.6)
A	PF11650	e8eaoA1	A: alpha arrays	X: Hypothetical protein YqbG-like (From Topology)	H: Hypothetical protein YqbG-like (From Topology)	T: Hypothetical protein YqbG-like	F: PF11650	ECOD (1.6)
C	PF11650	e8eaoC1	A: alpha arrays	X: Hypothetical protein YqbG-like (From Topology)	H: Hypothetical protein YqbG-like (From Topology)	T: Hypothetical protein YqbG-like	F: PF11650	ECOD (1.6)
E	PF11650	e8eaoE1	A: alpha arrays	X: Hypothetical protein YqbG-like (From Topology)	H: Hypothetical protein YqbG-like (From Topology)	T: Hypothetical protein YqbG-like	F: PF11650	ECOD (1.6)
G	PF11650	e8eaoG1	A: alpha arrays	X: Hypothetical protein YqbG-like (From Topology)	H: Hypothetical protein YqbG-like (From Topology)	T: Hypothetical protein YqbG-like	F: PF11650	ECOD (1.6)
K	PF11650	e8eaoK1	A: alpha arrays	X: Hypothetical protein YqbG-like (From Topology)	H: Hypothetical protein YqbG-like (From Topology)	T: Hypothetical protein YqbG-like	F: PF11650	ECOD (1.6)
M	PF11650	e8eaoM1	A: alpha arrays	X: Hypothetical protein YqbG-like (From Topology)	H: Hypothetical protein YqbG-like (From Topology)	T: Hypothetical protein YqbG-like	F: PF11650	ECOD (1.6)
O	PF11650	e8eaoO1	A: alpha arrays	X: Hypothetical protein YqbG-like (From Topology)	H: Hypothetical protein YqbG-like (From Topology)	T: Hypothetical protein YqbG-like	F: PF11650	ECOD (1.6)
S	PF11650	e8eaoS1	A: alpha arrays	X: Hypothetical protein YqbG-like (From Topology)	H: Hypothetical protein YqbG-like (From Topology)	T: Hypothetical protein YqbG-like	F: PF11650	ECOD (1.6)
U	PF11650	e8eaoU1	A: alpha arrays	X: Hypothetical protein YqbG-like (From Topology)	H: Hypothetical protein YqbG-like (From Topology)	T: Hypothetical protein YqbG-like	F: PF11650	ECOD (1.6)

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, C, E, G, I A, C, E, G, I, K, M, O, Q, S, U, W	Peptidoglycan hydrolase gp4	hydrolase activity catalytic activity	symbiont-mediated disruption of host anatomical structure biological process involved in interspecies interaction between organisms viral life cycle symbiont-mediated disruption of host cell envelope biological process involved in interaction with host biological process involved in symbiotic interaction symbiont entry into host cell via disruption of host cell envelope symbiont-mediated disruption of host cellular anatomical entity symbiont entry into host cell viral process symbiont entry into host disruption of anatomical structure in another organism disruption of cell wall in another organism symbiont-mediated disruption of host cell wall symbiont-mediated disruption of host anatomical structure biological process involved in interspecies interaction between organisms viral life cycle symbiont-mediated disruption of host cell envelope biological process involved in interaction with host biological process involved in symbiotic interaction symbiont entry into host cell via disruption of host cell envelope symbiont-mediated disruption of host cellular anatomical entity symbiont entry into host cell viral process symbiont entry into host disruption of anatomical structure in another organism disruption of cell wall in another organism symbiont-mediated disruption of host cell wall symbiont entry into host cell via disruption of host cell wall peptidoglycan disruption of cellular anatomical structure in another organism symbiont genome ejection through host cell envelope symbiont genome ejection through host cell envelope, short tail mechanism	virus tail virion component
B, D, F, H, J B, D, F, H, J, L, N, P, R, T, V, X	Portal protein	-	virion assembly viral process viral life cycle viral genome packaging viral DNA genome packaging symbiont genome ejection through host cell envelope biological process involved in interspecies interaction between organisms symbiont entry into host cell symbiont entry into host symbiont genome ejection through host cell envelope, short tail mechanism biological process involved in interaction with host biological process involved in symbiotic interaction viral DNA genome packaging, headful	protein-containing complex viral capsid virion component viral portal complex

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, C, E, G, I A, C, E, G, I, K, M, O, Q, S, U, W	IPR038258	Peptidoglycan hydrolase Gp4 superfamily	Homologous Superfamily
A, C, E, G, I A, C, E, G, I, K, M, O, Q, S, U, W	IPR020362	Tail accessory factor GP4	Family
B, D, F, H, J B, D, F, H, J, L, N, P, R, T, V, X	IPR032427	Phage P22-like portal protein	Family

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM133198.