8E59

Human L-type voltage-gated calcium channel Cav1.3 in the presence of Amiodarone at 3.1 Angstrom resolution

External Resource: Annotation

Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification
Pharos: Disease Associations
Membrane Protein Annotation: OPM
Membrane Protein Annotation: PDBTM
Membrane Protein Annotation: mpstruc

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A	PF08763	Voltage gated calcium channel IQ domain (Ca_chan_IQ)	Voltage gated calcium channel IQ domain	Voltage gated calcium channels control cellular calcium entry in response to changes in membrane potential. The isoleucine-glutamine (IQ) motif in the voltage gated calcium channel IQ domain interacts with hydrophobic pockets of Ca2+/calmodulin [1]. ...	Voltage gated calcium channels control cellular calcium entry in response to changes in membrane potential. The isoleucine-glutamine (IQ) motif in the voltage gated calcium channel IQ domain interacts with hydrophobic pockets of Ca2+/calmodulin [1]. The interaction regulates two self-regulatory calcium dependent feedback mechanism, calcium dependent inactivation (CDI), and calcium-dependent facilitation (CDF).	Domain
A	PF16905	Voltage-dependent L-type calcium channel, IQ-associated (GPHH)	Voltage-dependent L-type calcium channel, IQ-associated	-	Family
A	PF00520	Ion transport protein (Ion_trans)	Ion transport protein	-	Family
B [auth D]	PF08399	VWA N-terminal (VWA_N)	VWA N-terminal	-	Family
B [auth D]	PF00092	von Willebrand factor type A domain (VWA)	von Willebrand factor type A domain	-	Domain
B [auth D]	PF08473	Neuronal voltage-dependent calcium channel alpha 2acd (VGCC_alpha2)	Neuronal voltage-dependent calcium channel alpha 2acd	-	Family
C	PF00625	Guanylate kinase (Guanylate_kin)	Guanylate kinase	-	Domain
C	PF12052	Voltage gated calcium channel subunit beta domain 4Aa N terminal (VGCC_beta4Aa_N)	Voltage gated calcium channel subunit beta domain 4Aa N terminal	The beta subunit of voltage gated calcium channels is coded for by four genes 1-4. Gene 4 can produce two types of beta4A domain (beta4Aa and beta4Ab) according to how the gene splicing is carried out. This family is part of the beta4Aa N terminal do ...	The beta subunit of voltage gated calcium channels is coded for by four genes 1-4. Gene 4 can produce two types of beta4A domain (beta4Aa and beta4Ab) according to how the gene splicing is carried out. This family is part of the beta4Aa N terminal domain. It is made up of an alpha helix and a beta strand. It is thought to regulate the channel properties through protein-protein interactions with non Ca channel proteins. [1]	Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A	Voltage-dependent L-type calcium channel subunit alpha-1D	cytoskeletal protein binding ankyrin binding protein binding binding calcium channel activity monoatomic cation transmembrane transporter activity voltage-gated calcium channel activity gated channel activity monoatomic ion channel activity voltage-gated channel activity voltage-gated monoatomic ion channel activity voltage-gated monoatomic cation channel activity monoatomic cation channel activity passive transmembrane transporter activity cytoskeletal protein binding ankyrin binding protein binding binding calcium channel activity monoatomic cation transmembrane transporter activity voltage-gated calcium channel activity gated channel activity monoatomic ion channel activity voltage-gated channel activity voltage-gated monoatomic ion channel activity voltage-gated monoatomic cation channel activity monoatomic cation channel activity passive transmembrane transporter activity calcium ion transmembrane transporter activity inorganic molecular entity transmembrane transporter activity channel activity inorganic cation transmembrane transporter activity monoatomic ion transmembrane transporter activity transporter activity metal ion transmembrane transporter activity transmembrane transporter activity alpha-actinin binding actinin binding voltage-gated calcium channel activity involved in cardiac muscle cell action potential voltage-gated calcium channel activity involved SA node cell action potential cation binding ion binding metal ion binding small molecule binding	membrane depolarization during action potential membrane depolarization biological regulation membrane depolarization during cardiac muscle cell action potential action potential regulation of biological quality cardiac muscle cell action potential regulation of membrane potential heart process cardiac muscle cell contraction multicellular organismal process system process cardiac muscle cell action potential involved in contraction actin filament-based movement membrane depolarization during action potential membrane depolarization biological regulation membrane depolarization during cardiac muscle cell action potential action potential regulation of biological quality cardiac muscle cell action potential regulation of membrane potential heart process cardiac muscle cell contraction multicellular organismal process system process cardiac muscle cell action potential involved in contraction actin filament-based movement cardiac muscle contraction muscle contraction muscle system process striated muscle contraction circulatory system process actin filament-based process cellular process actin-mediated cell contraction heart contraction blood circulation cellular response to stimulus regulation of biological process regulation of cellular process response to stimulus signaling cell communication adenylate cyclase-modulating G protein-coupled receptor signaling pathway G protein-coupled receptor signaling pathway signal transduction SA node cell to atrial cardiac muscle cell signaling regulation of heart contraction cell-cell signaling involved in cardiac conduction regulation of system process SA node cell to atrial cardiac muscle cell communication regulation of multicellular organismal process cell communication involved in cardiac conduction SA node cell action potential cell-cell signaling regulation of blood circulation cardiac conduction membrane depolarization during SA node cell action potential regulation of localization regulation of potassium ion transport transport monoatomic ion transmembrane transport potassium ion transmembrane transport regulation of transmembrane transporter activity regulation of monoatomic ion transmembrane transport metal ion transport regulation of transporter activity monoatomic cation transmembrane transport localization monoatomic ion transport monoatomic cation transport regulation of metal ion transport regulation of potassium ion transmembrane transporter activity regulation of monoatomic ion transmembrane transporter activity regulation of transport regulation of monoatomic ion transport inorganic ion transmembrane transport regulation of potassium ion transmembrane transport establishment of localization inorganic cation transmembrane transport transmembrane transport regulation of molecular function regulation of transmembrane transport potassium ion transport regulation of monoatomic cation transmembrane transport positive regulation of adenylate cyclase activity positive regulation of cyclase activity regulation of catalytic activity positive regulation of catalytic activity positive regulation of molecular function regulation of lyase activity regulation of adenylate cyclase activity regulation of cyclase activity positive regulation of lyase activity import into cell calcium ion transmembrane import into cytosol import across plasma membrane inorganic cation import across plasma membrane calcium ion transport calcium ion import across plasma membrane inorganic ion import across plasma membrane calcium ion import calcium ion import into cytosol calcium ion transmembrane transport cardiac muscle cell membrane repolarization membrane repolarization regulation of membrane repolarization atrial cardiac muscle cell membrane repolarization regulation of cardiac muscle cell membrane repolarization regulation of atrial cardiac muscle cell membrane repolarization regulation of calcium ion transport positive regulation of calcium ion transport positive regulation of biological process positive regulation of transport positive regulation of monoatomic ion transport sensory perception nervous system process sensory perception of sound sensory perception of mechanical stimulus regulation of heart rate by cardiac conduction regulation of heart rate	protein-containing complex plasma membrane protein complex sarcolemma voltage-gated calcium channel complex plasma membrane membrane membrane protein complex cation channel complex cellular anatomical entity transporter complex cell periphery transmembrane transporter complex T-tubule L-type voltage-gated calcium channel complex protein-containing complex plasma membrane protein complex sarcolemma voltage-gated calcium channel complex plasma membrane membrane membrane protein complex cation channel complex cellular anatomical entity transporter complex cell periphery transmembrane transporter complex T-tubule L-type voltage-gated calcium channel complex calcium channel complex monoatomic ion channel complex intracellular anatomical structure Z disc sarcomere intracellular organelle I band organelle intracellular non-membrane-bounded organelle contractile muscle fiber cytoplasm supramolecular fiber myofibril supramolecular polymer supramolecular complex non-membrane-bounded organelle
B [auth D]	Voltage-dependent calcium channel subunit alpha-2/delta-1	calcium channel activity monoatomic cation transmembrane transporter activity voltage-gated calcium channel activity gated channel activity monoatomic ion channel activity voltage-gated channel activity voltage-gated monoatomic ion channel activity voltage-gated monoatomic cation channel activity monoatomic cation channel activity passive transmembrane transporter activity calcium ion transmembrane transporter activity inorganic molecular entity transmembrane transporter activity channel activity inorganic cation transmembrane transporter activity monoatomic ion transmembrane transporter activity calcium channel activity monoatomic cation transmembrane transporter activity voltage-gated calcium channel activity gated channel activity monoatomic ion channel activity voltage-gated channel activity voltage-gated monoatomic ion channel activity voltage-gated monoatomic cation channel activity monoatomic cation channel activity passive transmembrane transporter activity calcium ion transmembrane transporter activity inorganic molecular entity transmembrane transporter activity channel activity inorganic cation transmembrane transporter activity monoatomic ion transmembrane transporter activity transporter activity metal ion transmembrane transporter activity transmembrane transporter activity cation binding ion binding binding metal ion binding small molecule binding	heart process cardiac muscle cell contraction multicellular organismal process system process cardiac muscle cell action potential involved in contraction biological regulation action potential actin filament-based movement cardiac muscle contraction muscle contraction muscle system process striated muscle contraction circulatory system process actin filament-based process heart process cardiac muscle cell contraction multicellular organismal process system process cardiac muscle cell action potential involved in contraction biological regulation action potential actin filament-based movement cardiac muscle contraction muscle contraction muscle system process striated muscle contraction circulatory system process actin filament-based process cellular process regulation of biological quality actin-mediated cell contraction heart contraction cardiac muscle cell action potential blood circulation regulation of membrane potential calcium ion transmembrane import into cytosol transport monoatomic ion transmembrane transport positive regulation of cytosolic calcium ion concentration inorganic ion transmembrane transport establishment of localization calcium ion transport metal ion transport inorganic cation transmembrane transport transmembrane transport monoatomic cation transmembrane transport localization monoatomic ion transport monoatomic cation transport calcium ion transport into cytosol calcium ion transmembrane transport regulation of action potential regulation of biological process regulation of membrane repolarization during action potential membrane repolarization regulation of membrane repolarization membrane repolarization during action potential regulation of calcium ion transport regulation of localization regulation of transport regulation of monoatomic ion transport regulation of metal ion transport calcium ion transmembrane transport via high voltage-gated calcium channel cardiac muscle cell membrane repolarization ventricular cardiac muscle cell membrane repolarization regulation of cardiac muscle cell membrane repolarization regulation of ventricular cardiac muscle cell membrane repolarization regulation of calcium ion transmembrane transporter activity positive regulation of cation transmembrane transport positive regulation of calcium ion transport regulation of cellular process regulation of voltage-gated calcium channel activity positive regulation of monoatomic ion transport positive regulation of monoatomic ion transmembrane transport regulation of cation channel activity positive regulation of cation channel activity regulation of molecular function regulation of transmembrane transport positive regulation of voltage-gated calcium channel activity positive regulation of biological process regulation of transmembrane transporter activity regulation of monoatomic ion transmembrane transport regulation of transporter activity regulation of calcium ion transmembrane transport positive regulation of molecular function positive regulation of calcium ion transmembrane transporter activity positive regulation of calcium ion transmembrane transport positive regulation of transmembrane transport positive regulation of cellular process positive regulation of high voltage-gated calcium channel activity regulation of monoatomic ion transmembrane transporter activity regulation of high voltage-gated calcium channel activity positive regulation of transport positive regulation of transporter activity positive regulation of ion transmembrane transporter activity regulation of monoatomic cation transmembrane transport import into cell import across plasma membrane inorganic cation import across plasma membrane calcium ion import across plasma membrane inorganic ion import across plasma membrane calcium ion import calcium ion import into cytosol signaling regulation of heart contraction regulation of system process cell-cell signaling involved in cardiac conduction membrane depolarization during cardiac muscle cell action potential cell communication bundle of His cell to Purkinje myocyte signaling regulation of multicellular organismal process cell communication involved in cardiac conduction bundle of His cell to Purkinje myocyte communication membrane depolarization during action potential cell-cell signaling regulation of blood circulation bundle of His cell action potential membrane depolarization cardiac conduction membrane depolarization during bundle of His cell action potential regulation of calcium ion transmembrane transport via high voltage-gated calcium channel cellular response to stimulus cellular response to nitrogen compound response to organic substance response to stimulus response to organonitrogen compound response to endogenous stimulus response to oxygen-containing compound response to nitrogen compound cellular response to amyloid-beta cellular response to oxygen-containing compound cellular response to endogenous stimulus cellular response to chemical stimulus cellular response to organonitrogen compound response to chemical cellular response to organic substance response to amyloid-beta regulation of heart rate by cardiac conduction regulation of heart rate	protein-containing complex plasma membrane protein complex sarcolemma voltage-gated calcium channel complex plasma membrane membrane membrane protein complex cation channel complex cellular anatomical entity transporter complex cell periphery transmembrane transporter complex T-tubule L-type voltage-gated calcium channel complex protein-containing complex plasma membrane protein complex sarcolemma voltage-gated calcium channel complex plasma membrane membrane membrane protein complex cation channel complex cellular anatomical entity transporter complex cell periphery transmembrane transporter complex T-tubule L-type voltage-gated calcium channel complex calcium channel complex monoatomic ion channel complex membrane-bounded organelle intracellular anatomical structure dense core granule intracellular vesicle intracellular membrane-bounded organelle endomembrane system intracellular organelle cytoplasmic vesicle organelle secretory granule secretory vesicle cytoplasm vesicle neuronal dense core vesicle extracellular exosome extracellular vesicle extracellular organelle extracellular region extracellular space extracellular membrane-bounded organelle sarcoplasm endoplasmic reticulum sarcoplasmic reticulum
C	Voltage-dependent L-type calcium channel subunit beta-3	calcium channel activity monoatomic cation transmembrane transporter activity voltage-gated calcium channel activity gated channel activity monoatomic ion channel activity voltage-gated channel activity voltage-gated monoatomic ion channel activity voltage-gated monoatomic cation channel activity monoatomic cation channel activity passive transmembrane transporter activity calcium ion transmembrane transporter activity inorganic molecular entity transmembrane transporter activity channel activity inorganic cation transmembrane transporter activity monoatomic ion transmembrane transporter activity calcium channel activity monoatomic cation transmembrane transporter activity voltage-gated calcium channel activity gated channel activity monoatomic ion channel activity voltage-gated channel activity voltage-gated monoatomic ion channel activity voltage-gated monoatomic cation channel activity monoatomic cation channel activity passive transmembrane transporter activity calcium ion transmembrane transporter activity inorganic molecular entity transmembrane transporter activity channel activity inorganic cation transmembrane transporter activity monoatomic ion transmembrane transporter activity high voltage-gated calcium channel activity transporter activity metal ion transmembrane transporter activity transmembrane transporter activity channel regulator activity ion channel regulator activity calcium channel regulator activity molecular function regulator activity transporter regulator activity	calcium ion transmembrane import into cytosol transport monoatomic ion transmembrane transport positive regulation of cytosolic calcium ion concentration biological regulation inorganic ion transmembrane transport establishment of localization calcium ion transport metal ion transport inorganic cation transmembrane transport transmembrane transport monoatomic cation transmembrane transport localization monoatomic ion transport calcium ion transmembrane import into cytosol transport monoatomic ion transmembrane transport positive regulation of cytosolic calcium ion concentration biological regulation inorganic ion transmembrane transport establishment of localization calcium ion transport metal ion transport inorganic cation transmembrane transport transmembrane transport monoatomic cation transmembrane transport localization monoatomic ion transport cellular process regulation of biological quality monoatomic cation transport calcium ion transport into cytosol calcium ion transmembrane transport regulation of action potential regulation of biological process regulation of membrane repolarization during action potential membrane repolarization regulation of membrane repolarization action potential membrane repolarization during action potential regulation of membrane potential cellular response to stimulus immune response-regulating cell surface receptor signaling pathway regulation of cellular process response to stimulus signaling positive regulation of biological process cell communication positive regulation of response to stimulus immune response-activating signaling pathway immune response-regulating signaling pathway positive regulation of immune response regulation of immune system process signal transduction positive regulation of immune system process cell surface receptor signaling pathway immune response-activating cell surface receptor signaling pathway immune response T cell receptor signaling pathway regulation of response to stimulus immune system process regulation of immune response antigen receptor-mediated signaling pathway activation of immune response calcium ion transmembrane transport via high voltage-gated calcium channel cellular component organization cell junction organization neuromuscular junction development synapse organization cellular component organization or biogenesis protein localization protein localization to cell periphery cellular localization protein localization to plasma membrane cellular macromolecule localization macromolecule localization localization within membrane protein localization to membrane regulation of calcium ion transmembrane transporter activity regulation of calcium ion transport regulation of localization positive regulation of cation transmembrane transport positive regulation of calcium ion transport regulation of voltage-gated calcium channel activity positive regulation of monoatomic ion transport positive regulation of monoatomic ion transmembrane transport regulation of monoatomic ion transport regulation of cation channel activity positive regulation of cation channel activity regulation of molecular function regulation of transmembrane transport positive regulation of voltage-gated calcium channel activity regulation of transmembrane transporter activity regulation of monoatomic ion transmembrane transport regulation of transporter activity regulation of calcium ion transmembrane transport positive regulation of molecular function positive regulation of calcium ion transmembrane transporter activity positive regulation of calcium ion transmembrane transport positive regulation of transmembrane transport regulation of metal ion transport positive regulation of cellular process positive regulation of high voltage-gated calcium channel activity regulation of monoatomic ion transmembrane transporter activity regulation of high voltage-gated calcium channel activity regulation of transport positive regulation of transport positive regulation of transporter activity positive regulation of ion transmembrane transporter activity regulation of monoatomic cation transmembrane transport trans-synaptic signaling synaptic signaling anterograde trans-synaptic signaling cell-cell signaling chemical synaptic transmission	protein-containing complex plasma membrane protein complex sarcolemma voltage-gated calcium channel complex plasma membrane membrane membrane protein complex cation channel complex cellular anatomical entity transporter complex cell periphery transmembrane transporter complex T-tubule L-type voltage-gated calcium channel complex protein-containing complex plasma membrane protein complex sarcolemma voltage-gated calcium channel complex plasma membrane membrane membrane protein complex cation channel complex cellular anatomical entity transporter complex cell periphery transmembrane transporter complex T-tubule L-type voltage-gated calcium channel complex calcium channel complex monoatomic ion channel complex intracellular anatomical structure cytoplasm cytosol synapse cell junction

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A	IPR014873	Voltage-dependent calcium channel, alpha-1 subunit, IQ domain	Domain
A	IPR005452	Voltage-dependent calcium channel, L-type, alpha-1D subunit	Family
A	IPR002077	Voltage-dependent calcium channel, alpha-1 subunit	Family
A	IPR031649	Voltage-dependent L-type calcium channel, IQ-associated domain	Domain
A	IPR005821	Ion transport domain	Domain
A	IPR005446	Voltage-dependent calcium channel, L-type, alpha-1 subunit	Family
A	IPR031688	Voltage-gated calcium channel subunit alpha, C-terminal	Domain
A	IPR027359	Voltage-dependent channel domain superfamily	Homologous Superfamily
B [auth D]	IPR013608	VWA N-terminal	Domain
B [auth D]	IPR036465	von Willebrand factor A-like domain superfamily	Homologous Superfamily
B [auth D]	IPR013680	Voltage-dependent calcium channel, alpha-2/delta subunit, conserved region	Domain
B [auth D]	IPR002035	von Willebrand factor, type A	Domain
C	IPR008145	Guanylate kinase/L-type calcium channel beta subunit	Domain
C	IPR036028	SH3-like domain superfamily	Homologous Superfamily
C	IPR027417	P-loop containing nucleoside triphosphate hydrolase	Homologous Superfamily
C	IPR000584	Voltage-dependent calcium channel, L-type, beta subunit	Family
C	IPR001452	SH3 domain	Domain
C	IPR035760	Voltage-dependent L-type calcium channel subunit beta-3, SH3 domain	Domain
C	IPR046937	Voltage-dependent L-type calcium channel subunit beta-1-4, N-terminal A domain	Domain
C	IPR008079	Voltage-dependent calcium channel, L-type, beta-3 subunit	Family

Pharos: Disease Associations Pharos Homepage Annotation

Chains	Drug Target	Associated Disease
A	Pharos: Q01668	hyperaldosteronism sinoatrial node dysfunction and deafness aldosterone-producing adenoma with seizures and neurological abnormalities sick sinus syndrome hypertensive disorder adenoma Bradycardia follicular thyroid adenoma microcystic adenoma bipolar disorder papillary adenoma invasive ductal breast carcinoma lung cancer atrioventricular dissociation malignant glioma hyperaldosteronism sinoatrial node dysfunction and deafness aldosterone-producing adenoma with seizures and neurological abnormalities sick sinus syndrome hypertensive disorder adenoma Bradycardia follicular thyroid adenoma microcystic adenoma bipolar disorder papillary adenoma invasive ductal breast carcinoma lung cancer atrioventricular dissociation malignant glioma medulloblastoma pancreatic intraductal papillary-mucinous carcinoma ductal breast carcinoma in situ primitive neuroectodermal tumor intellectual disability large cell medulloblastoma lung carcinoma attention deficit hyperactivity disorder, inattentive type non-small cell lung carcinoma pancreatic intraductal papillary-mucinous neoplasm primary aldosteronism epilepsy Prinzmetal angina glioblastoma interstitial cystitis lung adenocarcinoma malignant ependymoma atypical teratoid rhabdoid tumor osteosarcoma
B [auth D]	Pharos: P54289	Brugada syndrome malignant colon neoplasm hypertensive disorder Pain short QT syndrome type 1 neuralgia lung carcinoma pituitary cancer malignant glioma psoriasis sarcoidosis atopic eczema breast cancer oligodendroglioma colonic neoplasm Brugada syndrome malignant colon neoplasm hypertensive disorder Pain short QT syndrome type 1 neuralgia lung carcinoma pituitary cancer malignant glioma psoriasis sarcoidosis atopic eczema breast cancer oligodendroglioma colonic neoplasm ductal breast carcinoma in situ glioblastoma invasive ductal breast carcinoma Pick disease postherpetic neuralgia malignant hyperthermia of anesthesia medulloblastoma ulcerative colitis atypical teratoid rhabdoid tumor breast carcinoma dermatomyositis osteosarcoma fibromyalgia large cell medulloblastoma pilocytic astrocytoma malignant ependymoma primitive neuroectodermal tumor malignant mesothelioma restless legs syndrome nasopharyngeal carcinoma astrocytic tumor benign colon neoplasm ovarian cancer generalized anxiety disorder pancreatic ductal adenocarcinoma
C	Pharos: P54284	astrocytic tumor glioblastoma lung cancer malignant mesothelioma ovarian cancer pancreatic intraductal papillary-mucinous carcinoma primitive neuroectodermal tumor atypical teratoid rhabdoid tumor invasive ductal breast carcinoma malignant ependymoma medulloblastoma ovarian cyst pancreatic intraductal papillary-mucinous neoplasm subependymal giant cell astrocytoma corpus luteum cyst astrocytic tumor glioblastoma lung cancer malignant mesothelioma ovarian cancer pancreatic intraductal papillary-mucinous carcinoma primitive neuroectodermal tumor atypical teratoid rhabdoid tumor invasive ductal breast carcinoma malignant ependymoma medulloblastoma ovarian cyst pancreatic intraductal papillary-mucinous neoplasm subependymal giant cell astrocytoma corpus luteum cyst large cell medulloblastoma malignant glioma oligodendroglioma Ovarian Cysts pilocytic astrocytoma

Membrane Protein Annotation: OPM OPM Database Homepage

Chains	External Link	Type	Class	Superfamily	Family
A, B [auth D]	OPM	Transmembrane	Alpha-helical polytopic	Ion channel (VIC) superfamily	Voltage-sensitive calcium channel

Membrane Protein Annotation: PDBTM PDBTM Database Homepage

Chains	External Link	Comment
A, B [auth D]	PDBTM	Annotated as membrane protein by PDBTM

Membrane Protein Annotation: mpstruc mpstruc Database Homepage

Chains	Resource Link	Group	Subgroup	Protein
A, B [auth D]	mpstruc	TRANSMEMBRANE PROTEINS: ALPHA-HELICAL	Channels: Calcium Ion-Selective	Ca_V1.3 L-type voltage-gated calcium channel in presence of 0.14 mM amiodarone