8DML

Vibrio parahaemolyticus VtrA/VtrC complex bound to the bile salt chenodeoxycholate

External Resource: Annotation

Domain Annotation: ECOD Classification
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
B	PF22280	e8dmlB1	A: beta barrels	X: Lipocalins/Streptavidin	H: Lipocalins (From Topology)	T: Lipocalins	F: PF22280	ECOD (1.6)
D	PF22280	e8dmlD1	A: beta barrels	X: Lipocalins/Streptavidin	H: Lipocalins (From Topology)	T: Lipocalins	F: PF22280	ECOD (1.6)
F	PF22280	e8dmlF1	A: beta barrels	X: Lipocalins/Streptavidin	H: Lipocalins (From Topology)	T: Lipocalins	F: PF22280	ECOD (1.6)
H	PF22280	e8dmlH1	A: beta barrels	X: Lipocalins/Streptavidin	H: Lipocalins (From Topology)	T: Lipocalins	F: PF22280	ECOD (1.6)
A	PF22100	e8dmlA1	A: a+b two layers	X: dsRBD-like	H: VtrA protein periplasmic domain (From Topology)	T: VtrA protein periplasmic domain	F: PF22100	ECOD (1.6)
C	PF22100	e8dmlC1	A: a+b two layers	X: dsRBD-like	H: VtrA protein periplasmic domain (From Topology)	T: VtrA protein periplasmic domain	F: PF22100	ECOD (1.6)
E	PF22100	e8dmlE1	A: a+b two layers	X: dsRBD-like	H: VtrA protein periplasmic domain (From Topology)	T: VtrA protein periplasmic domain	F: PF22100	ECOD (1.6)
G	PF22100	e8dmlG1	A: a+b two layers	X: dsRBD-like	H: VtrA protein periplasmic domain (From Topology)	T: VtrA protein periplasmic domain	F: PF22100	ECOD (1.6)

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
B, D, F, H	VtrC	-	-	membrane cellular anatomical entity
A, C, E, G	VtrA	DNA binding binding organic cyclic compound binding nucleic acid binding	cellular response to stimulus regulation of biological process phosphorelay signal transduction system regulation of cellular process response to stimulus signaling biological regulation intracellular signal transduction cell communication cellular process signal transduction cellular biosynthetic process RNA metabolic process regulation of primary metabolic process cellular response to stimulus regulation of biological process phosphorelay signal transduction system regulation of cellular process response to stimulus signaling biological regulation intracellular signal transduction cell communication cellular process signal transduction cellular biosynthetic process RNA metabolic process regulation of primary metabolic process nucleobase-containing compound metabolic process RNA biosynthetic process nucleic acid biosynthetic process DNA-templated transcription regulation of RNA metabolic process organic substance metabolic process organic substance biosynthetic process regulation of nucleobase-containing compound metabolic process regulation of RNA biosynthetic process regulation of biosynthetic process cellular metabolic process primary metabolic process regulation of cellular metabolic process regulation of macromolecule metabolic process nucleobase-containing compound biosynthetic process gene expression macromolecule biosynthetic process nucleic acid metabolic process regulation of cellular biosynthetic process organic cyclic compound metabolic process regulation of gene expression biosynthetic process organic cyclic compound biosynthetic process metabolic process regulation of macromolecule biosynthetic process regulation of DNA-templated transcription macromolecule metabolic process regulation of metabolic process	membrane cellular anatomical entity

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, C, E, G	IPR001867	OmpR/PhoB-type DNA-binding domain	Domain
A, C, E, G	IPR016032	Signal transduction response regulator, C-terminal effector	Homologous Superfamily
A, C, E, G	IPR036388	Winged helix-like DNA-binding domain superfamily	Homologous Superfamily

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM133198.