8D9W
beta-Arf1 homodimeric interface within AP-1, Arf1, Nef, MHC-I lattice on narrow tubes
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
E [auth F] | SCOP2B Superfamily | Ras-like P-loop GTPases | 8089848 | 3002022 | SCOP2B (2022-06-29) |
K [auth I] | SCOP2B Superfamily | Ras-like P-loop GTPases | 8089848 | 3002022 | SCOP2B (2022-06-29) |
J [auth e] | SCOP2B Superfamily | SNARE-like | 8082711 | 3001113 | SCOP2B (2022-06-29) |
P [auth f] | SCOP2B Superfamily | SNARE-like | 8082711 | 3001113 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A [auth N] | PF00469 | e8d9wN1 | A: a+b three layers | X: Regulatory factor Nef (From Topology) | H: Regulatory factor Nef (From Topology) | T: Regulatory factor Nef | F: PF00469 | ECOD (1.6) |
Q [auth d] | PF00469 | e8d9wd1 | A: a+b three layers | X: Regulatory factor Nef (From Topology) | H: Regulatory factor Nef (From Topology) | T: Regulatory factor Nef | F: PF00469 | ECOD (1.6) |
D [auth M] | PF00928 | e8d9wM1 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Common fold of diphtheria toxin/transcription factors/cytochrome f | F: PF00928 | ECOD (1.6) |
D [auth M] | F_UNCLASSIFIED | e8d9wM2 | A: a+b three layers | X: Profilin-like | H: profilin-like (From Topology) | T: profilin-like | F: F_UNCLASSIFIED | ECOD (1.6) |
I [auth X] | PF01217 | e8d9wX1 | A: a+b three layers | X: Profilin-like | H: profilin-like (From Topology) | T: profilin-like | F: PF01217 | ECOD (1.6) |
T [auth a] | PF00928 | e8d9wa1 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Common fold of diphtheria toxin/transcription factors/cytochrome f | F: PF00928 | ECOD (1.6) |
T [auth a] | F_UNCLASSIFIED | e8d9wa2 | A: a+b three layers | X: Profilin-like | H: profilin-like (From Topology) | T: profilin-like | F: F_UNCLASSIFIED | ECOD (1.6) |
O [auth Z] | PF01217 | e8d9wZ1 | A: a+b three layers | X: Profilin-like | H: profilin-like (From Topology) | T: profilin-like | F: PF01217 | ECOD (1.6) |
E [auth F] | PF00025 | e8d9wF1 | A: a/b three-layered sandwiches | X: P-loop domains-like | H: P-loop domains-related | T: P-loop containing nucleoside triphosphate hydrolases | F: PF00025 | ECOD (1.6) |
K [auth I] | PF00025 | e8d9wI1 | A: a/b three-layered sandwiches | X: P-loop domains-like | H: P-loop domains-related | T: P-loop containing nucleoside triphosphate hydrolases | F: PF00025 | ECOD (1.6) |
G [auth K] | PF01602 | e8d9wK1 | A: alpha superhelices | X: Repetitive alpha hairpins | H: ARM repeat (From Topology) | T: ARM repeat | F: PF01602 | ECOD (1.6) |
M [auth O] | PF01602 | e8d9wO1 | A: alpha superhelices | X: Repetitive alpha hairpins | H: ARM repeat (From Topology) | T: ARM repeat | F: PF01602 | ECOD (1.6) |
J [auth e] | PF01217 | e8d9we1 | A: a+b three layers | X: Profilin-like | H: profilin-like (From Topology) | T: profilin-like | F: PF01217 | ECOD (1.6) |
P [auth f] | PF01217 | e8d9wf1 | A: a+b three layers | X: Profilin-like | H: profilin-like (From Topology) | T: profilin-like | F: PF01217 | ECOD (1.6) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
A [auth N], H [auth U], N [auth V], Q [auth d] | PF00469 | Negative factor, (F-Protein) or Nef (F-protein) | Negative factor, (F-Protein) or Nef | - | Family |
B [auth Y], R [auth j] | PF06623 | MHC_I C-terminus (MHC_I_C) | MHC_I C-terminus | - | Family |
C [auth B], F [auth A], L [auth D], S [auth E] | PF01602 | Adaptin N terminal region (Adaptin_N) | Adaptin N terminal region | - | Repeat |
D [auth M], I [auth X], O [auth Z], T [auth a] | PF00928 | Adaptor complexes medium subunit family (Adap_comp_sub) | Adaptor complexes medium subunit family | - | Family |
E [auth F], K [auth I] | PF00025 | ADP-ribosylation factor family (Arf) | ADP-ribosylation factor family | Pfam combines a number of different Prosite families together | Domain |
G [auth K], M [auth O] | PF01602 | Adaptin N terminal region (Adaptin_N) | Adaptin N terminal region | - | Repeat |
J [auth e], P [auth f] | PF01217 | Clathrin adaptor complex small chain (Clat_adaptor_s) | Clathrin adaptor complex small chain | - | Domain |