8BGI

GABA-A receptor a5 homomer - a5V1 - Flumazenil

External Resource: Annotation

Domain Annotation: ECOD Classification
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification
Pharos: Disease Associations

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A	PF02931	e8bgiA1	A: beta sandwiches	X: Immunoglobulin-like beta-sandwich	H: Nicotinic receptor ligand binding domain-like (From Topology)	T: Nicotinic receptor ligand binding domain-like	F: PF02931	ECOD (1.6)
A	PF02932	e8bgiA2	A: alpha bundles	X: Neurotransmitter-gated ion-channel transmembrane pore (From Topology)	H: Neurotransmitter-gated ion-channel transmembrane pore (From Topology)	T: Neurotransmitter-gated ion-channel transmembrane pore	F: PF02932	ECOD (1.6)
B	PF02931	e8bgiB2	A: beta sandwiches	X: Immunoglobulin-like beta-sandwich	H: Nicotinic receptor ligand binding domain-like (From Topology)	T: Nicotinic receptor ligand binding domain-like	F: PF02931	ECOD (1.6)
B	PF02932	e8bgiB1	A: alpha bundles	X: Neurotransmitter-gated ion-channel transmembrane pore (From Topology)	H: Neurotransmitter-gated ion-channel transmembrane pore (From Topology)	T: Neurotransmitter-gated ion-channel transmembrane pore	F: PF02932	ECOD (1.6)
C	PF02931	e8bgiC1	A: beta sandwiches	X: Immunoglobulin-like beta-sandwich	H: Nicotinic receptor ligand binding domain-like (From Topology)	T: Nicotinic receptor ligand binding domain-like	F: PF02931	ECOD (1.6)
C	PF02932	e8bgiC2	A: alpha bundles	X: Neurotransmitter-gated ion-channel transmembrane pore (From Topology)	H: Neurotransmitter-gated ion-channel transmembrane pore (From Topology)	T: Neurotransmitter-gated ion-channel transmembrane pore	F: PF02932	ECOD (1.6)
D	PF02931	e8bgiD2	A: beta sandwiches	X: Immunoglobulin-like beta-sandwich	H: Nicotinic receptor ligand binding domain-like (From Topology)	T: Nicotinic receptor ligand binding domain-like	F: PF02931	ECOD (1.6)
D	PF02932	e8bgiD1	A: alpha bundles	X: Neurotransmitter-gated ion-channel transmembrane pore (From Topology)	H: Neurotransmitter-gated ion-channel transmembrane pore (From Topology)	T: Neurotransmitter-gated ion-channel transmembrane pore	F: PF02932	ECOD (1.6)
E	PF02931	e8bgiE2	A: beta sandwiches	X: Immunoglobulin-like beta-sandwich	H: Nicotinic receptor ligand binding domain-like (From Topology)	T: Nicotinic receptor ligand binding domain-like	F: PF02931	ECOD (1.6)
E	PF02932	e8bgiE1	A: alpha bundles	X: Neurotransmitter-gated ion-channel transmembrane pore (From Topology)	H: Neurotransmitter-gated ion-channel transmembrane pore (From Topology)	T: Neurotransmitter-gated ion-channel transmembrane pore	F: PF02932	ECOD (1.6)

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B, C, D, E	Gamma-aminobutyric acid receptor subunit alpha-5	molecular transducer activity signaling receptor activity gated channel activity monoatomic ion channel activity inhibitory extracellular ligand-gated monoatomic ion channel activity ligand-gated channel activity ligand-gated monoatomic ion channel activity extracellular ligand-gated monoatomic ion channel activity passive transmembrane transporter activity channel activity monoatomic ion transmembrane transporter activity transporter activity transmembrane transporter activity transmitter-gated monoatomic ion channel activity molecular transducer activity signaling receptor activity gated channel activity monoatomic ion channel activity inhibitory extracellular ligand-gated monoatomic ion channel activity ligand-gated channel activity ligand-gated monoatomic ion channel activity extracellular ligand-gated monoatomic ion channel activity passive transmembrane transporter activity channel activity monoatomic ion transmembrane transporter activity transporter activity transmembrane transporter activity transmitter-gated monoatomic ion channel activity monoatomic anion transmembrane transporter activity chloride transmembrane transporter activity neurotransmitter receptor activity inorganic molecular entity transmembrane transporter activity GABA-gated chloride ion channel activity ligand-gated monoatomic anion channel activity transmitter-gated channel activity monoatomic anion channel activity inorganic anion transmembrane transporter activity chloride channel activity ligand-gated monoatomic ion channel activity involved in regulation of presynaptic membrane potential protein binding binding signaling receptor binding GABA receptor binding GABA-A receptor activity GABA receptor activity transmembrane signaling receptor activity transmitter-gated monoatomic ion channel activity involved in regulation of postsynaptic membrane potential postsynaptic neurotransmitter receptor activity neurotransmitter receptor activity involved in regulation of postsynaptic membrane potential	developmental process ear development sensory organ development inner ear development cochlea development animal organ development anatomical structure development transport monoatomic ion transmembrane transport inorganic ion transmembrane transport inorganic anion transmembrane transport establishment of localization chloride transport transmembrane transport developmental process ear development sensory organ development inner ear development cochlea development animal organ development anatomical structure development transport monoatomic ion transmembrane transport inorganic ion transmembrane transport inorganic anion transmembrane transport establishment of localization chloride transport transmembrane transport localization chloride transmembrane transport monoatomic anion transport monoatomic anion transmembrane transport monoatomic ion transport cellular process inorganic anion transport multicellular organismal process mechanoreceptor differentiation inner ear receptor cell development cellular developmental process cell development nervous system development inner ear receptor cell differentiation generation of neurons neurogenesis multicellular organism development neuron differentiation cell differentiation neuron development system development regulation of biological process signaling biological regulation cell-cell signaling gamma-aminobutyric acid signaling pathway cell communication regulation of postsynaptic membrane potential regulation of biological quality regulation of membrane potential cellular response to stimulus regulation of cellular process response to stimulus signal transduction behavior system process learning learning or memory nervous system process cognition associative learning trans-synaptic signaling synaptic transmission, GABAergic chemical synaptic transmission synaptic signaling anterograde trans-synaptic signaling behavioral defense response fear response behavioral fear response defense response response to stress multicellular organismal response to stress nerve development innervation	protein-containing complex transmembrane transporter complex membrane chloride channel complex membrane protein complex cellular anatomical entity transporter complex monoatomic ion channel complex intracellular anatomical structure cytoplasm cytosol cell periphery plasma membrane presynapse protein-containing complex transmembrane transporter complex membrane chloride channel complex membrane protein complex cellular anatomical entity transporter complex monoatomic ion channel complex intracellular anatomical structure cytoplasm cytosol cell periphery plasma membrane presynapse synapse cell junction presynaptic membrane plasma membrane region synaptic membrane postsynaptic specialization membrane postsynaptic specialization postsynapse organelle postsynaptic membrane GABA receptor complex GABA-A receptor complex receptor complex membrane-bounded organelle nucleus membrane-enclosed lumen intracellular membrane-bounded organelle intracellular organelle lumen intracellular organelle nucleoplasm organelle lumen nuclear lumen GABA-ergic synapse cell projection neuron projection plasma membrane bounded cell projection cell leading edge leading edge membrane somatodendritic compartment neuron projection membrane dendrite membrane dendrite dendritic tree cell projection membrane neuronal cell body membrane cell body cell body membrane neuronal cell body

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B, C, D, E	IPR001390	Gamma-aminobutyric-acid A receptor, alpha subunit	Family
A, B, C, D, E	IPR006202	Neurotransmitter-gated ion-channel ligand-binding domain	Domain
A, B, C, D, E	IPR036719	Neurotransmitter-gated ion-channel transmembrane domain superfamily	Homologous Superfamily
A, B, C, D, E	IPR006028	Gamma-aminobutyric acid A receptor/Glycine receptor alpha	Family
A, B, C, D, E	IPR006029	Neurotransmitter-gated ion-channel transmembrane domain	Domain
A, B, C, D, E	IPR005435	Gamma-aminobutyric-acid A receptor, alpha 5 subunit	Family
A, B, C, D, E	IPR036734	Neurotransmitter-gated ion-channel ligand-binding domain superfamily	Homologous Superfamily
A, B, C, D, E	IPR018000	Neurotransmitter-gated ion-channel, conserved site	Conserved Site
A, B, C, D, E	IPR038050	Neuronal acetylcholine receptor	Homologous Superfamily
A, B, C, D, E	IPR047024	Gamma-aminobutyric acid receptor subunit alpha 1-6, transmembrane domain	Domain
A, B, C, D, E	IPR006201	Neurotransmitter-gated ion-channel	Family

Pharos: Disease Associations Pharos Homepage Annotation

Chains	Drug Target	Associated Disease
A, B, C, D, E	Pharos: P31644	Social Communication Disorder epilepsy visual epilepsy status epilepticus mixed anxiety and depressive disorder duplication/inversion 15q11 oligodendroglioma pilocytic astrocytoma primitive neuroectodermal tumor hydrolethalus syndrome intellectual disability atypical teratoid rhabdoid tumor malignant ependymoma breast cancer tetanus Social Communication Disorder epilepsy visual epilepsy status epilepticus mixed anxiety and depressive disorder duplication/inversion 15q11 oligodendroglioma pilocytic astrocytoma primitive neuroectodermal tumor hydrolethalus syndrome intellectual disability atypical teratoid rhabdoid tumor malignant ependymoma breast cancer tetanus peptic ulcer disease glioblastoma schizoaffective disorder astrocytic tumor irritable bowel syndrome autism large cell medulloblastoma malignant glioma epilepsy with generalized tonic-clonic seizures panic disorder Pick disease generalized anxiety disorder alcohol withdrawal delirium schizophrenia insomnia autism spectrum disorder medulloblastoma bipolar disorder

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM133198.