8AGV

Yeast RQC complex in state H


Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
ASCOP2B SuperfamilyRibosomal proteins S24e L23 and L15e8082481 3000210 SCOP2B (2022-06-29)
KSCOP2B SuperfamilyRibosomal proteins S24e L23 and L15e8095962 3000210 SCOP2B (2022-06-29)
LSCOP2B SuperfamilyTranslation proteins SH3-like KOW motif containing domain8076760 3000334 SCOP2B (2022-06-29)
MSCOP2B SuperfamilyTranslation proteins SH3-like KOW motif containing domain8053046 3000334 SCOP2B (2022-06-29)
NSCOP2B SuperfamilyRibosomal proteins L15p and L18e8077127 3001045 SCOP2B (2022-06-29)
OSCOP2B SuperfamilyRibosomal protein L29e8096930 3002157 SCOP2B (2022-06-29)
PSCOP2B SuperfamilyL30e-like8039862 3001739 SCOP2B (2022-06-29)
SSCOP2B SuperfamilyTranslational proteins8087451 3000811 SCOP2B (2022-06-29)
BSCOP2B SuperfamilyRibosomal protein L138066053 3001134 SCOP2B (2022-06-29)
TSCOP2B SuperfamilyRibosomal protein L34e-like8053547 3002203 SCOP2B (2022-06-29)
VSCOP2B SuperfamilyRibosomal protein L36e8053115 3002161 SCOP2B (2022-06-29)
WSCOP2B SuperfamilyZn-binding ribosomal proteins8080044 3001320 SCOP2B (2022-06-29)
XSCOP2B SuperfamilyRibosomal L38e protein-like8053562 3002206 SCOP2B (2022-06-29)
YSCOP2B SuperfamilyRibosomal protein L39e8078549 3001756 SCOP2B (2022-06-29)
BA [auth c]SCOP2B SuperfamilyZn-binding ribosomal proteins8103126 3001320 SCOP2B (2022-06-29)
CSCOP2B SuperfamilyRibosomal protein L228076708 3001078 SCOP2B (2022-06-29)
HA [auth k]SCOP2B SuperfamilyTranslational proteins8096942 3000811 SCOP2B (2022-06-29)
IA [auth l]SCOP2B Superfamily60S ribosomal protein L4 C-terminal domain-like8052815 3002143 SCOP2B (2022-06-29)
IA [auth l]SCOP2B SuperfamilyRibosomal protein L48052816 3001146 SCOP2B (2022-06-29)
JA [auth m]SCOP2B SuperfamilyTranslational machinery components8096938 3000571 SCOP2B (2022-06-29)
LA [auth o]SCOP2B SuperfamilyRibosomal L30p/L7e protein N-terminal domain-lke8052916 3002152 SCOP2B (2022-06-29)
LA [auth o]SCOP2B SuperfamilyRibosomal protein L30p/L7e8052917 3001378 SCOP2B (2022-06-29)
MA [auth p]SCOP2B SuperfamilyL30e-like8063962 3001739 SCOP2B (2022-06-29)
DSCOP2B SuperfamilyRibosomal proteins L15p and L18e8095970 3001045 SCOP2B (2022-06-29)
OA [auth r]SCOP2B SuperfamilyRibosomal protein L16p/L10e8101313 3000884 SCOP2B (2022-06-29)
PA [auth s]SCOP2B SuperfamilyRL5-like8073884 3001709 SCOP2B (2022-06-29)
QA [auth t]SCOP2B SuperfamilyRibosomal protein L13e-like8053159 3002162 SCOP2B (2022-06-29)
UA [auth g]SCOP2B SuperfamilyPentein8036230 3000640 SCOP2B (2022-06-29)
VA [auth w]SCOP2B SuperfamilyRibosomal protein L1p/L10e-like8098448 3001911 SCOP2B (2022-06-29)
ESCOP2B SuperfamilyRibosomal protein L19 (L19e)8077485 3000890 SCOP2B (2022-06-29)
HSCOP2B Superfamily60S Ribosomal protein L22e8053058 3002158 SCOP2B (2022-06-29)
ISCOP2B Superfamily50S Ribosomal protein L14-like8103364 3000433 SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
APF00827e8agvA1 A: a+b two layersX: Alpha-beta plaitsH: Ribosomal proteins S24e, L23 and L15e (From Topology)T: Ribosomal proteins S24e, L23 and L15eF: PF00827ECOD (1.6)
JPF01246e8agvJ1 A: few secondary structure elementsX: Glucocorticoid receptor-likeH: LIM domain-likeT: LIM domain-likeF: PF01246ECOD (1.6)
KPF00276,PF03939e8agvK1 A: a+b two layersX: Alpha-beta plaitsH: Ribosomal proteins S24e, L23 and L15e (From Topology)T: Ribosomal proteins S24e, L23 and L15eF: PF00276,PF03939ECOD (1.6)
LPF16906e8agvL1 A: beta barrelsX: SH3H: SH3T: SH3F: PF16906ECOD (1.6)
MPF01777e8agvM1 A: beta barrelsX: SH3H: SH3T: SH3F: PF01777ECOD (1.6)
NPF00828e8agvN1 A: a/b three-layered sandwichesX: Ribosomal protein L13/L15p/L18e/L32eH: Ribosomal proteins L15p and L18e (From Topology)T: Ribosomal proteins L15p and L18eF: PF00828ECOD (1.6)
OPF01779e8agvO1 A: extended segmentsX: RPL29 (From Topology)H: RPL29 (From Topology)T: RPL29F: PF01779ECOD (1.6)
PPF01248e8agvP1 A: a+b three layersX: Bacillus chorismate mutase-likeH: L30e-like (From Topology)T: L30e-likeF: PF01248ECOD (1.6)
QPF01198e8agvQ1 A: a+b two layersX: Ribosomal protein L31e-likeH: Ribosomal protein L31e/gp120 outer domain (From Topology)T: Ribosomal protein L31e/gp120 outer domainF: PF01198ECOD (1.6)
RPF01655e8agvR1 A: a/b three-layered sandwichesX: Ribosomal protein L13/L15p/L18e/L32eH: Ribosomal protein L32e (From Topology)T: Ribosomal protein L32eF: PF01655ECOD (1.6)
SPF01247e8agvS1 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: Alanine racemase-CF: PF01247ECOD (1.6)
BPF00572e8agvB1 A: a/b three-layered sandwichesX: Ribosomal protein L13/L15p/L18e/L32eH: Ribosomal protein L13 and L16-A (From Topology)T: Ribosomal protein L13 and L16-AF: PF00572ECOD (1.6)
TPF01199e8agvT1 A: few secondary structure elementsX: Glucocorticoid receptor-likeH: RPL34 (From Topology)T: RPL34F: PF01199ECOD (1.6)
UPF00831e8agvU1 A: alpha bundlesX: Long alpha-hairpinH: Ribosomal protein L29 (L29p) (From Topology)T: Ribosomal protein L29 (L29p)F: PF00831ECOD (1.6)
VPF01158e8agvV1 A: alpha arraysX: 60S ribosomal protein rpL36 (L36e) (From Topology)H: 60S ribosomal protein rpL36 (L36e) (From Topology)T: 60S ribosomal protein rpL36 (L36e)F: PF01158ECOD (1.6)
WPF01907e8agvW1 A: few secondary structure elementsX: Rubredoxin-likeH: Rubredoxin-relatedT: Rubredoxin-relatedF: PF01907ECOD (1.6)
XPF01781e8agvX1 A: a+b two layersX: SRP9/14-likeH: Signal recognition particle alu RNA binding heterodimer SRP9/14-related (From Topology)T: Signal recognition particle alu RNA binding heterodimer SRP9/14-relatedF: PF01781ECOD (1.6)
YPF00832e8agvY1 A: extended segmentsX: Ribosomal protein L39e (From Topology)H: Ribosomal protein L39e (From Topology)T: Ribosomal protein L39eF: PF00832ECOD (1.6)
ZPF01020e8agvZ1 A: few secondary structure elementsX: Rubredoxin-likeH: Rubredoxin-relatedT: Rubredoxin-relatedF: PF01020ECOD (1.6)
AA [auth b]PF00935e8agvb1 A: few secondary structure elementsX: Rubredoxin-likeH: Rubredoxin-relatedT: Rubredoxin-relatedF: PF00935ECOD (1.6)
BA [auth c]PF01780e8agvc1 A: few secondary structure elementsX: Rubredoxin-likeH: Rubredoxin-relatedT: Rubredoxin-relatedF: PF01780ECOD (1.6)
CA [auth d]PF05162e8agvd1 A: extended segmentsX: Ribosomal protein L41-A (From Topology)H: Ribosomal protein L41-A (From Topology)T: Ribosomal protein L41-AF: PF05162ECOD (1.6)
CPF00237e8agvC1 A: a+b two layersX: Enolase-N/ribosomal proteinH: Ribosomal protein L22 (From Topology)T: Ribosomal protein L22F: PF00237ECOD (1.6)
GA [auth j]PF00181e8agvj1 A: beta barrelsX: OB-foldH: Nucleic acid-binding proteins (From Topology)T: Nucleic acid-binding proteinsF: PF00181ECOD (1.6)
GA [auth j]PF03947e8agvj2 A: beta barrelsX: SH3H: SH3T: SH3F: PF03947ECOD (1.6)
HA [auth k]PF00297e8agvk1 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: Alanine racemase-CF: PF00297ECOD (1.6)
IA [auth l]PF00573e8agvl1 A: a/b three-layered sandwichesX: Ribosomal protein L4 (From Topology)H: Ribosomal protein L4 (From Topology)T: Ribosomal protein L4F: PF00573ECOD (1.6)
IA [auth l]PF14374e8agvl2 A: extended segmentsX: C-terminal helical region in 60S ribosomal protein L4 (L4p) (From Topology)H: C-terminal helical region in 60S ribosomal protein L4 (L4p) (From Topology)T: C-terminal helical region in 60S ribosomal protein L4 (L4p)F: PF14374ECOD (1.6)
JA [auth m]PF14204,PF17144e8agvm1 A: mixed a+b and a/bX: Ribonuclease H-likeH: Ribonuclease H-like (From Topology)T: Ribonuclease H-likeF: PF14204,PF17144ECOD (1.6)
KA [auth n]PF01159e8agvn1 A: beta barrelsX: SH3H: SH3T: SH3F: PF01159ECOD (1.6)
LA [auth o]PF00327,PF08079e8agvo1 A: a+b two layersX: Ribosomal protein L30p/L7e (From Topology)H: Ribosomal protein L30p/L7e (From Topology)T: Ribosomal protein L30p/L7eF: PF00327,PF08079ECOD (1.6)
MA [auth p]PF01248e8agvp1 A: a+b three layersX: Bacillus chorismate mutase-likeH: L30e-like (From Topology)T: L30e-likeF: PF01248ECOD (1.6)
DPF17135e8agvD1 A: a/b three-layered sandwichesX: Ribosomal protein L13/L15p/L18e/L32eH: Ribosomal proteins L15p and L18e (From Topology)T: Ribosomal proteins L15p and L18eF: PF17135ECOD (1.6)
NA [auth q]PF00347e8agvq2 A: a+b two layersX: Ribosomal protein L6 (From Topology)H: Ribosomal protein L6 (From Topology)T: Ribosomal protein L6F: PF00347ECOD (1.6)
OA [auth r]PF00252e8agvr1 A: a+b complex topologyX: alpha/beta-Hammerhead/Barrel-sandwich hybridH: alpha/beta-Hammerhead/Barrel-sandwich hybridT: Ribosomal protein L10eF: PF00252ECOD (1.6)
PA [auth s]PF00281,PF00673e8agvs1 A: a+b two layersX: Ribosomal protein L5 (From Topology)H: Ribosomal protein L5 (From Topology)T: Ribosomal protein L5F: PF00281,PF00673ECOD (1.6)
QA [auth t]PF01294e8agvt1 A: extended segmentsX: RPL13 (From Topology)H: RPL13 (From Topology)T: RPL13F: PF01294ECOD (1.6)
RA [auth u]PF00467,PF01929e8agvu1 A: beta barrelsX: SH3H: SH3T: SH3F: PF00467,PF01929ECOD (1.6)
UA [auth g]PF01912e8agvg1 A: a+b duplicates or obligate multimersX: Pentein (From Topology)H: Pentein (From Topology)T: PenteinF: PF01912ECOD (1.6)
VA [auth w]PF00687e8agvw2 A: a+b two layersX: a+b domain in Ribosomal protein L1 (From Topology)H: a+b domain in Ribosomal protein L1 (From Topology)T: a+b domain in Ribosomal protein L1F: PF00687ECOD (1.6)
VA [auth w]PF00687e8agvw1 A: a/b three-layered sandwichesX: Flavodoxin-likeH: Rossmann-like domain in Ribosomal protein L1 (From Topology)T: Rossmann-like domain in Ribosomal protein L1F: PF00687ECOD (1.6)
EPF01280e8agvE2 A: alpha arraysX: Ribosomal protein L19 (L19e) N-terminal domain (From Topology)H: Ribosomal protein L19 (L19e) N-terminal domain (From Topology)T: Ribosomal protein L19 (L19e) N-terminal domainF: PF01280ECOD (1.6)
EPF01280e8agvE1 A: alpha bundlesX: Ribosomal protein L19 (L19e) C-terminal domain (From Topology)H: Ribosomal protein L19 (L19e) C-terminal domain (From Topology)T: Ribosomal protein L19 (L19e) C-terminal domainF: PF01280ECOD (1.6)
YA [auth z]PF00298e8agvz2 A: alpha arraysX: HTHH: HTHT: Ribosomal protein L11, C-terminal domainF: PF00298ECOD (1.6)
YA [auth z]PF03946e8agvz1 A: a+b two layersX: Ribosomal protein L11/L12e N-terminal domain-likeH: Ribosomal protein L11/L12e N-terminal domain (From Topology)T: Ribosomal protein L11/L12e N-terminal domainF: PF03946ECOD (1.6)
ZA [auth 0]PF00466e8agv01 A: a+b two layersX: Alpha-beta plaitsH: Ribosomal protein L10-like (From Topology)T: Ribosomal protein L10-likeF: PF00466ECOD (1.6)
BB [auth v]PF01287e8agvv2 A: beta barrelsX: OB-foldH: Nucleic acid-binding proteins (From Topology)T: Nucleic acid-binding proteinsF: PF01287ECOD (1.6)
BB [auth v]PF21485e8agvv1 A: beta barrelsX: SH3H: SH3T: SH3F: PF21485ECOD (1.6)
FF_UNCLASSIFIEDe8agvF1 A: a+b two layersX: GP2-likeH: RplX-like (From Topology)T: RplX-likeF: F_UNCLASSIFIEDECOD (1.6)
FPF01775e8agvF2 A: a+b two layersX: GP2-likeH: RplX-like (From Topology)T: RplX-likeF: PF01775ECOD (1.6)
GPF01157e8agvG1 A: beta barrelsX: SH3H: SH3T: SH3F: PF01157ECOD (1.6)
HPF01776e8agvH1 A: a+b two layersX: Ribosomal protein L22e (From Topology)H: Ribosomal protein L22e (From Topology)T: Ribosomal protein L22eF: PF01776ECOD (1.6)
IPF00238e8agvI1 A: beta barrelsX: Ribosomal protein L14-likeH: Ribosomal protein L14-related (From Topology)T: Ribosomal protein L14-relatedF: PF00238ECOD (1.6)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
PF00827Ribosomal L15 (Ribosomal_L15e)Ribosomal L15- Family
PF01246Ribosomal protein L24e (Ribosomal_L24e)Ribosomal protein L24e- Domain
PF03939Ribosomal protein L23, N-terminal domain (Ribosomal_L23eN)Ribosomal protein L23, N-terminal domain- Family
PF00276Ribosomal protein L23 (Ribosomal_L23)Ribosomal protein L23- Family
PF16906Ribosomal proteins L26 eukaryotic, L24P archaeal (Ribosomal_L26)Ribosomal proteins L26 eukaryotic, L24P archaeal- Family
PF00467KOW motif (KOW)KOW motif- Family
PF01777Ribosomal L27e protein family (Ribosomal_L27e)Ribosomal L27e protein family- Family
PF00828Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A (Ribosomal_L27A)Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A- Family
PF01779Ribosomal L29e protein family (Ribosomal_L29e)Ribosomal L29e protein family- Family
PF01248Ribosomal protein L7Ae/L30e/S12e/Gadd45 family (Ribosomal_L7Ae)Ribosomal protein L7Ae/L30e/S12e/Gadd45 familyThis family includes: Ribosomal L7A from metazoa, Ribosomal L8-A and L8-B from fungi, 30S ribosomal protein HS6 from archaebacteria, 40S ribosomal protein S12 from eukaryotes, Ribosomal protein L30 from eukaryotes and archaebacteria. Gadd45 and MyD11 ...This family includes: Ribosomal L7A from metazoa, Ribosomal L8-A and L8-B from fungi, 30S ribosomal protein HS6 from archaebacteria, 40S ribosomal protein S12 from eukaryotes, Ribosomal protein L30 from eukaryotes and archaebacteria. Gadd45 and MyD118 [1].
Domain
PF01198Ribosomal protein L31e (Ribosomal_L31e)Ribosomal protein L31e- Family
PF01655Ribosomal protein L32 (Ribosomal_L32e)Ribosomal protein L32- Family
PF01247Ribosomal protein L35Ae (Ribosomal_L35Ae)Ribosomal protein L35Ae- Domain
PF00572Ribosomal protein L13 (Ribosomal_L13)Ribosomal protein L13- Family
PF01199Ribosomal protein L34e (Ribosomal_L34e)Ribosomal protein L34e- Family
PF00831Ribosomal L29 protein (Ribosomal_L29)Ribosomal L29 protein- Family
PF01158Ribosomal protein L36e (Ribosomal_L36e)Ribosomal protein L36e- Family
PF01907Ribosomal protein L37e (Ribosomal_L37e)Ribosomal protein L37e- Family
PF01781Ribosomal L38e protein family (Ribosomal_L38e)Ribosomal L38e protein family- Family
PF00832Ribosomal L39 protein (Ribosomal_L39)Ribosomal L39 protein- Family
PF01020Ribosomal L40e family (Ribosomal_L40e)Ribosomal L40e family- Family
AA [auth b]PF00935Ribosomal protein L44 (Ribosomal_L44)Ribosomal protein L44- Family
BA [auth c]PF01780Ribosomal L37ae protein family (Ribosomal_L37ae)Ribosomal L37ae protein family- Family
CA [auth d]PF05162Ribosomal protein L41 (Ribosomal_L41)Ribosomal protein L41- Family
PF00237Ribosomal protein L22p/L17e (Ribosomal_L22)Ribosomal protein L22p/L17eThis family includes L22 from prokaryotes and chloroplasts and L17 from eukaryotes.Domain
GA [auth j]PF03947Ribosomal Proteins L2, C-terminal domain (Ribosomal_L2_C)Ribosomal Proteins L2, C-terminal domain- Domain
GA [auth j]PF00181Ribosomal Proteins L2, RNA binding domain (Ribosomal_L2)Ribosomal Proteins L2, RNA binding domain- Domain
HA [auth k]PF00297Ribosomal protein L3 (Ribosomal_L3)Ribosomal protein L3- Family
IA [auth l]PF1437460S ribosomal protein L4 C-terminal domain (Ribos_L4_asso_C)60S ribosomal protein L4 C-terminal domainThis family is found at the very C-terminal of 60 ribosomal L4 proteins.Domain
IA [auth l]PF00573Ribosomal protein L4/L1 family (Ribosomal_L4)Ribosomal protein L4/L1 family- Family
JA [auth m]PF17144Ribosomal large subunit proteins 60S L5, and 50S L18 (Ribosomal_L5e)Ribosomal large subunit proteins 60S L5, and 50S L18- Family
JA [auth m]PF14204Ribosomal L18 C-terminal region (Ribosomal_L18_c)Ribosomal L18 C-terminal regionThis domain is the C-terminal end of ribosomal L18/L5 proteins.Domain
KA [auth n]PF01159Ribosomal protein L6e (Ribosomal_L6e)Ribosomal protein L6e- Family
LA [auth o]PF08079Ribosomal L30 N-terminal domain (Ribosomal_L30_N)Ribosomal L30 N-terminal domainThis presumed domain is found at the N-terminus of Ribosomal L30 proteins and has been termed RL30NT or NUC018 [1].Domain
LA [auth o]PF00327Ribosomal protein L30p/L7e (Ribosomal_L30)Ribosomal protein L30p/L7eThis family includes prokaryotic L30 and eukaryotic L7.Domain
MA [auth p]PF01248Ribosomal protein L7Ae/L30e/S12e/Gadd45 family (Ribosomal_L7Ae)Ribosomal protein L7Ae/L30e/S12e/Gadd45 familyThis family includes: Ribosomal L7A from metazoa, Ribosomal L8-A and L8-B from fungi, 30S ribosomal protein HS6 from archaebacteria, 40S ribosomal protein S12 from eukaryotes, Ribosomal protein L30 from eukaryotes and archaebacteria. Gadd45 and MyD11 ...This family includes: Ribosomal L7A from metazoa, Ribosomal L8-A and L8-B from fungi, 30S ribosomal protein HS6 from archaebacteria, 40S ribosomal protein S12 from eukaryotes, Ribosomal protein L30 from eukaryotes and archaebacteria. Gadd45 and MyD118 [1].
Domain
PF17135Ribosomal protein 60S L18 and 50S L18e (Ribosomal_L18)Ribosomal protein 60S L18 and 50S L18e- Family
NA [auth q]PF00347Ribosomal protein L6 (Ribosomal_L6)Ribosomal protein L6- Domain
OA [auth r]PF00252Ribosomal protein L16p/L10e (Ribosomal_L16)Ribosomal protein L16p/L10e- Domain
PA [auth s]PF00281Ribosomal protein L5 (Ribosomal_L5)Ribosomal protein L5- Domain
PA [auth s]PF00673ribosomal L5P family C-terminus (Ribosomal_L5_C)ribosomal L5P family C-terminusThis region is found associated with Pfam:PF00281.Domain
QA [auth t]PF01294Ribosomal protein L13e (Ribosomal_L13e)Ribosomal protein L13e- Family
RA [auth u]PF01929Ribosomal protein L14 (Ribosomal_L14e)Ribosomal protein L14- Family
RA [auth u]PF00467KOW motif (KOW)KOW motif- Family
SA [auth a]PF05670NFACT protein RNA binding domain (NFACT-R_1)NFACT protein RNA binding domainThis domain occurs in proteins that have been annotated as Fibronectin/fibrinogen binding protein by similarity. This annotation comes from Swiss:O34693 where the N-terminal region is involved in this activity [1]. It is an RNA binding domain of the ...This domain occurs in proteins that have been annotated as Fibronectin/fibrinogen binding protein by similarity. This annotation comes from Swiss:O34693 where the N-terminal region is involved in this activity [1]. It is an RNA binding domain of the NFACT (NEMF, FbpA, Caliban, and Tae2) proteins. This NFACT-R family is found in two eukaryotic gene contexts: fused to the NFACT-N and NFACT-C domains in the NFACT protein involved in the ribosomal quality control pathway which contributes to CAT-tailing and as a standalone domain [2]. Additionally this domain contains a conserved motif D/E-X-W/Y-X-H that may be functionally important.
Domain
SA [auth a]PF11923NFACT protein C-terminal domain (NFACT-C)NFACT protein C-terminal domainThis is the C-terminal domain of the NFACT (NEMF, FbpA, Caliban, and Tae2) proteins involved in the ribosomal quality control pathway. This context is conserved in archaea and eukaryotes, but NFACT proteins in bacteria lack the NFACT-C domain [1].Domain
SA [auth a]PF05833NFACT N-terminal and middle domains (NFACT_N)NFACT N-terminal and middle domains- Family
TA [auth e]PF13639Ring finger domain (zf-RING_2)Ring finger domain- Domain
UA [auth g]PF01912eIF-6 family (eIF-6)eIF-6 family- Family
VA [auth w]PF00687Ribosomal protein L1p/L10e family (Ribosomal_L1)Ribosomal protein L1p/L10e familyThis family includes prokaryotic L1 and eukaryotic L10.Domain
PF01280Ribosomal protein L19e (Ribosomal_L19e)Ribosomal protein L19e- Family
YA [auth z]PF03946Ribosomal protein L11, N-terminal domain (Ribosomal_L11_N)Ribosomal protein L11, N-terminal domainThe N-terminal domain of Ribosomal protein L11 adopts an alpha/beta fold and is followed by the RNA binding C-terminal domain.Domain
YA [auth z]PF00298Ribosomal protein L11, RNA binding domain (Ribosomal_L11)Ribosomal protein L11, RNA binding domain- Domain
ZA [auth 0]PF00466Ribosomal protein L10 (Ribosomal_L10)Ribosomal protein L10- Family
BB [auth v]PF21485Translation initiation factor 5A-like, N-terminal (IF5A-like_N)Translation initiation factor 5A-like, N-terminalThis is the N-terminal domain of Translation initiation factor 5A from eukaryotes and archaea, which has a SH2-like fold. These proteins are involved in translation elongation and eIF5A is specifically required to promote peptide-bond formation betwe ...This is the N-terminal domain of Translation initiation factor 5A from eukaryotes and archaea, which has a SH2-like fold. These proteins are involved in translation elongation and eIF5A is specifically required to promote peptide-bond formation between consecutive proline residues [1-5]. This entry also includes Woronin body major protein Hex1, which is similar to eIF5A.
Domain
BB [auth v]PF01287Eukaryotic elongation factor 5A hypusine, DNA-binding OB fold (eIF-5a)Eukaryotic elongation factor 5A hypusine, DNA-binding OB foldeIF5A, previously thought to be an initiation factor, has been shown to be required for peptide chain elongation in yeast [1].Domain
PF01775Ribosomal proteins 50S-L18Ae/60S-L20/60S-L18A (Ribosomal_L18A)Ribosomal proteins 50S-L18Ae/60S-L20/60S-L18AThis family includes: archaeal 50S ribosomal protein L18Ae, often referred to as L20e or LX; fungal 60S ribosomal protein L20; and higher eukaryote 60S ribosomal protein L18A.Domain
PF01157Ribosomal protein L21e (Ribosomal_L21e)Ribosomal protein L21e- Family
PF01776Ribosomal L22e protein family (Ribosomal_L22e)Ribosomal L22e protein family- Family
PF00238Ribosomal protein L14p/L23e (Ribosomal_L14)Ribosomal protein L14p/L23e- Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
60S ribosomal protein L15-A
60S ribosomal protein L24-A
60S ribosomal protein L25
60S ribosomal protein L26-A
60S ribosomal protein L27-A
60S ribosomal protein L28
60S ribosomal protein L29
60S ribosomal protein L30
60S ribosomal protein L31-A
60S ribosomal protein L32
60S ribosomal protein L33-A
60S ribosomal protein L16-A
60S ribosomal protein L34-A
60S ribosomal protein L35-A
60S ribosomal protein L36-A
60S ribosomal protein L37-A
60S ribosomal protein L38
60S ribosomal protein L39
Ubiquitin-60S ribosomal protein L40
AA [auth b]60S ribosomal protein L42-A
BA [auth c]60S ribosomal protein L43-A
CA [auth d]60S ribosomal protein L41-A
60S ribosomal protein L17-A
DA [auth f]25S rRNA---
EA [auth h]5S rRNA---
FA [auth i]5.8S rRNA---
GA [auth j]60S ribosomal protein L2-A
HA [auth k]60S ribosomal protein L3
IA [auth l]60S ribosomal protein L4-A
JA [auth m]60S ribosomal protein L5
KA [auth n]60S ribosomal protein L6-B
LA [auth o]60S ribosomal protein L7-A
MA [auth p]60S ribosomal protein L8-A
60S ribosomal protein L18-A
NA [auth q]60S ribosomal protein L9-A
OA [auth r]60S ribosomal protein L10
PA [auth s]60S ribosomal protein L11-A
QA [auth t]60S ribosomal protein L13-A
RA [auth u]60S ribosomal protein L14-A
SA [auth a]RQC2 isoform 1
TA [auth e]E3 ubiquitin-protein ligase listerin
UA [auth g]Eukaryotic translation initiation factor 6
VA [auth w]60S ribosomal protein L1-A
WA [auth x],
XA [auth y]
Ala tRNA---
60S ribosomal protein L19-A
YA [auth z]60S ribosomal protein L12-B
ZA [auth 0]60S acidic ribosomal protein P0
AB [auth 1]CAT-tailed nascent peptide---
BB [auth v]Eukaryotic translation initiation factor 5A-1
60S ribosomal protein L20-A
60S ribosomal protein L21-A
60S ribosomal protein L22-A
60S ribosomal protein L23-A

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
IPR012678Ribosomal protein uL23/eL15/eS24 core domain superfamilyHomologous Superfamily
IPR020925Large ribosomal subunit protein eL15, conserved siteConserved Site
IPR024794Large ribosomal subunit protein eL15 core domain superfamilyHomologous Superfamily
IPR000439Large ribosomal subunit protein eL15Family
IPR000988Large ribosomal subunit protein eL24-relatedFamily
IPR023442Large ribosomal subunit protein eL24, conserved siteConserved Site
IPR038630Ribosomal protein L24e/L24 superfamilyHomologous Superfamily
IPR001014Large ribosomal subunit protein uL23, conserved siteConserved Site
IPR013025Large ribosomal subunit protein uL23-likeFamily
IPR012678Ribosomal protein uL23/eL15/eS24 core domain superfamilyHomologous Superfamily
IPR012677Nucleotide-binding alpha-beta plait domain superfamilyHomologous Superfamily
IPR005633Large ribosomal subunit protein uL23, N-terminalDomain
IPR041988Large ribosomal subunit protein uL24, KOW domainDomain
IPR014722Large ribosomal subunit protein uL2, domain 2Homologous Superfamily
IPR005824KOWDomain
IPR008991Translation protein SH3-like domain superfamilyHomologous Superfamily
IPR005756Large ribosomal subunit protein uL24, eukaryotic/archaealFamily
IPR005825Large ribosomal subunit protein uL24, conserved siteConserved Site
IPR018262Large ribosomal subunit protein eL27, conserved siteConserved Site
IPR038655Large ribosomal subunit protein eL27 superfamilyHomologous Superfamily
IPR008991Translation protein SH3-like domain superfamilyHomologous Superfamily
IPR001141Large ribosomal subunit protein eL27Family
IPR041991Large ribosomal subunit protein eL27, KOW domainDomain
IPR021131Large ribosomal subunit protein uL15/eL18Domain
IPR030878Large ribosomal subunit protein uL15Family
IPR001196Large ribosomal subunit protein uL15, conserved siteConserved Site
IPR036227Large ribosomal subunit protein uL15/eL18 superfamilyHomologous Superfamily
IPR002673Large ribosomal subunit protein eL29Family
IPR022991Large ribosomal subunit protein eL30, conserved siteConserved Site
IPR004038Ribosomal protein eL8/eL30/eS12/Gadd45Domain
IPR039109Large ribosomal subunit protein eL30-likeFamily
IPR029064Ribosomal protein eL30-like superfamilyHomologous Superfamily
IPR020052Large ribosomal subunit protein eL31, conserved siteConserved Site
IPR023621Large ribosomal subunit protein eL31 domain superfamilyHomologous Superfamily
IPR000054Large ribosomal subunit protein eL31Family
IPR036351Large ribosomal subunit protein eL32 superfamilyHomologous Superfamily
IPR001515Large ribosomal subunit protein eL32Family
IPR018263Large ribosomal subunit protein eL32, conserved siteConserved Site
IPR038661Large ribosomal subunit protein eL33 superfamilyHomologous Superfamily
IPR009000Translation protein, beta-barrel domain superfamilyHomologous Superfamily
IPR001780Large ribosomal subunit protein eL33Family
IPR018266Large ribosomal subunit protein eL33, conserved siteConserved Site
IPR023563Large ribosomal subunit protein uL13, conserved siteConserved Site
IPR005822Large ribosomal subunit protein uL13Family
IPR036899Large ribosomal subunit protein uL13 superfamilyHomologous Superfamily
IPR005755Large ribosomal subunit protein uL13, eukaryotic/archaealFamily
IPR008195Large ribosomal subunit protein eL34Family
IPR018065Large ribosomal subunit protein eL34, conserved siteConserved Site
IPR045059Large ribosomal subunit protein uL29, eukaryotesFamily
IPR001854Large ribosomal subunit protein uL29Family
IPR036049Large ribosomal subunit protein uL29 superfamilyHomologous Superfamily
IPR018254Large ribosomal subunit protein uL29, conserved siteConserved Site
IPR000509Large ribosomal subunit protein eL36Family
IPR038097Large ribosomal subunit protein eL36 domain superfamilyHomologous Superfamily
IPR011331Large ribosomal subunit protein eL37/eL43Homologous Superfamily
IPR001569Large ribosomal subunit protein eL37Family
IPR018267Large ribosomal subunit protein eL37, conserved siteConserved Site
IPR011332Zinc-binding ribosomal proteinHomologous Superfamily
IPR002675Large ribosomal subunit protein eL38Family
IPR038464Large ribosomal subunit protein eL38 superfamilyHomologous Superfamily
IPR023626Large ribosomal subunit protein eL39 domain superfamilyHomologous Superfamily
IPR000077Large ribosomal subunit protein eL39Family
IPR020083Large ribosomal subunit protein eL39, conserved siteConserved Site
IPR019954Ubiquitin conserved siteConserved Site
IPR038587Large ribosomal subunit protein eL40 superfamilyHomologous Superfamily
IPR000626Ubiquitin-like domainDomain
IPR019956Ubiquitin domainDomain
IPR001975Large ribosomal subunit protein eL40 domainDomain
IPR029071Ubiquitin-like domain superfamilyHomologous Superfamily
AA [auth b]IPR011332Zinc-binding ribosomal proteinHomologous Superfamily
AA [auth b]IPR000552Large ribosomal subunit protein eL42Family
BA [auth c]IPR002674Large ribosomal subunit protein eL43Family
BA [auth c]IPR011332Zinc-binding ribosomal proteinHomologous Superfamily
BA [auth c]IPR011331Large ribosomal subunit protein eL37/eL43Homologous Superfamily
CA [auth d]IPR007836Large ribosomal subunit protein eS32Family
IPR018260Large ribosomal subunit protein uL22, conserved siteConserved Site
IPR036394Ribosomal protein uL22 superfamilyHomologous Superfamily
IPR001063Large ribosomal subunit protein uL22Family
IPR005721Large ribosomal subunit protein uL22, eukaryotic/archaealFamily
GA [auth j]IPR022669Large ribosomal subunit protein uL2, C-terminalDomain
GA [auth j]IPR014722Large ribosomal subunit protein uL2, domain 2Homologous Superfamily
GA [auth j]IPR008991Translation protein SH3-like domain superfamilyHomologous Superfamily
GA [auth j]IPR022671Large ribosomal subunit protein uL2, conserved siteConserved Site
GA [auth j]IPR012340Nucleic acid-binding, OB-foldHomologous Superfamily
GA [auth j]IPR022666Large ribosomal subunit protein uL2, RNA-binding domainDomain
GA [auth j]IPR014726Large ribosomal subunit protein uL2, domain 3Homologous Superfamily
GA [auth j]IPR002171Large ribosomal subunit protein uL2Family
HA [auth k]IPR019926Large ribosomal subunit protein uL3, conserved siteConserved Site
HA [auth k]IPR045077Large ribosomal subunit protein uL3, archaeal/eukaryotic-typeFamily
HA [auth k]IPR044892Ribosomal protein L3, domain 3, archaeal-type superfamilyHomologous Superfamily
HA [auth k]IPR000597Large ribosomal subunit protein uL3Family
HA [auth k]IPR009000Translation protein, beta-barrel domain superfamilyHomologous Superfamily
IA [auth l]IPR025755Large ribosomal subunit protein uL4, C-terminal domainDomain
IA [auth l]IPR002136Large ribosomal subunit protein uL4Family
IA [auth l]IPR013000Large ribosomal subunit protein uL4, eukaryotic/archaeal, conserved siteConserved Site
IA [auth l]IPR045240Large ribosomal subunit protein uL4, eukaryotic and archaeal typeFamily
IA [auth l]IPR023574Large ribosomal subunit protein uL4 domain superfamilyHomologous Superfamily
JA [auth m]IPR005485Large ribosomal subunit protein uL18 eukaryotic/archaealFamily
JA [auth m]IPR025607Large ribosomal subunit protein uL18, C-terminal, eukaryotesDomain
KA [auth n]IPR049633Large ribosomal subunit protein eL6, conserved siteConserved Site
KA [auth n]IPR014722Large ribosomal subunit protein uL2, domain 2Homologous Superfamily
KA [auth n]IPR041997Large ribosomal subunit protein eL6, KOW domainDomain
KA [auth n]IPR008991Translation protein SH3-like domain superfamilyHomologous Superfamily
KA [auth n]IPR000915Large ribosomal subunit protein eL6Family
LA [auth o]IPR035808Large ribosomal subunit protein uL30, eukaryotic/archaealDomain
LA [auth o]IPR036919Large ribosomal subunit protein uL30, ferredoxin-like fold domain superfamilyHomologous Superfamily
LA [auth o]IPR012988Large ribosomal subunit protein uL30, N-terminal, eukaryotesDomain
LA [auth o]IPR039699Large ribosomal subunit protein uL30Family
LA [auth o]IPR005998Large ribosomal subunit protein uL30, eukaryoticFamily
LA [auth o]IPR016082Large ribosomal subunit protein uL30-like, ferredoxin-like fold domainDomain
LA [auth o]IPR018038Large ribosomal subunit protein uL30, conserved siteConserved Site
MA [auth p]IPR001921Large ribosomal subunit protein eL8Family
MA [auth p]IPR004038Ribosomal protein eL8/eL30/eS12/Gadd45Domain
MA [auth p]IPR004037Large ribosomal subunit protein eL8-like, conserved siteConserved Site
MA [auth p]IPR029064Ribosomal protein eL30-like superfamilyHomologous Superfamily
MA [auth p]IPR018492Ribosomal protein eL8/Nhp2 familyFamily
IPR021131Large ribosomal subunit protein uL15/eL18Domain
IPR021132Large ribosomal subunit protein eL18, conserved siteConserved Site
IPR000039Large ribosomal subunit protein eL18Family
IPR036227Large ribosomal subunit protein uL15/eL18 superfamilyHomologous Superfamily
NA [auth q]IPR020040Large ribosomal subunit protein uL6, alpha-beta domainDomain
NA [auth q]IPR002359Large ribosomal subunit protein uL6, conserved site-2Conserved Site
NA [auth q]IPR036789Large ribosomal subunit protein uL6-like, alpha-beta domain superfamilyHomologous Superfamily
NA [auth q]IPR000702Large ribosomal subunit protein uL6-likeFamily
OA [auth r]IPR036920Large ribosomal subunit protein uL16 superfamilyHomologous Superfamily
OA [auth r]IPR001197Large ribosomal subunit protein uL16, eukaryotes/archaeaFamily
OA [auth r]IPR016180Large ribosomal subunit protein uL16 domainDomain
OA [auth r]IPR047873Large ribosomal subunit protein uL16Family
OA [auth r]IPR018255Large ribosomal subunit protein uL16, conserved site, eukaryotes/archaeaConserved Site
PA [auth s]IPR020929Large ribosomal subunit protein uL5, conserved siteConserved Site
PA [auth s]IPR022803Large ribosomal subunit protein uL5 domain superfamilyHomologous Superfamily
PA [auth s]IPR031309Large ribosomal subunit protein uL5, C-terminalDomain
PA [auth s]IPR031310Large ribosomal subunit protein uL5, N-terminalDomain
PA [auth s]IPR002132Large ribosomal subunit protein uL5Family
QA [auth t]IPR001380Large ribosomal subunit protein eL13Family
QA [auth t]IPR018256Large ribosomal subunit protein eL13, conserved siteConserved Site
RA [auth u]IPR014722Large ribosomal subunit protein uL2, domain 2Homologous Superfamily
RA [auth u]IPR008991Translation protein SH3-like domain superfamilyHomologous Superfamily
RA [auth u]IPR039660Large ribosomal subunit protein eL14Family
RA [auth u]IPR041985Large ribosomal subunit protein eL14, KOW motifDomain
RA [auth u]IPR002784Large ribosomal subunit protein eL14 domainDomain
RA [auth u]IPR005824KOWDomain
SA [auth a]IPR008532NFACT, RNA-binding domainDomain
SA [auth a]IPR021846NFACT protein, C-terminalDomain
TA [auth e]IPR016024Armadillo-type foldHomologous Superfamily
TA [auth e]IPR039795E3 ubiquitin-protein ligase listerinFamily
TA [auth e]IPR013083Zinc finger, RING/FYVE/PHD-typeHomologous Superfamily
TA [auth e]IPR011016Zinc finger, RING-CH-typeDomain
TA [auth e]IPR039804Listerin, zinc finger, RING-typeDomain
TA [auth e]IPR001841Zinc finger, RING-typeDomain
UA [auth g]IPR002769Translation initiation factor IF6Family
VA [auth w]IPR023673Large ribosomal subunit protein uL1, conserved siteConserved Site
VA [auth w]IPR016095Large ribosomal subunit protein uL1, 3-layer alpha/beta-sandwich domainHomologous Superfamily
VA [auth w]IPR023674Ribosomal protein uL1-likeHomologous Superfamily
VA [auth w]IPR002143Large ribosomal subunit protein uL1Family
VA [auth w]IPR028364Ribosomal protein uL1/ribosomal biogenesis proteinFamily
IPR015972Large ribosomal subunit protein eL19, domain 1Homologous Superfamily
IPR039547Large ribosomal subunit protein eL19Family
IPR023638Large ribosomal subunit protein eL19, conserved siteConserved Site
IPR035970Large ribosomal subunit protein eL19 superfamilyHomologous Superfamily
IPR000196Large ribosomal subunit protein eL19 domainDomain
IPR033935Large ribosomal subunit protein eL19, eukaryoticDomain
YA [auth z]IPR020785Large ribosomal subunit protein uL11, conserved siteConserved Site
YA [auth z]IPR020783Large ribosomal subunit protein uL11, C-terminalDomain
YA [auth z]IPR000911Ribosomal protein uL11Family
YA [auth z]IPR020784Large ribosomal subunit protein uL11, N-terminalDomain
YA [auth z]IPR036769Large ribosomal subunit protein uL11, C-terminal domain superfamilyHomologous Superfamily
YA [auth z]IPR036796Large ribosomal subunit protein uL11, N-terminal domain superfamilyHomologous Superfamily
ZA [auth 0]IPR043141Large ribosomal subunit protein uL10-like domain superfamilyHomologous Superfamily
ZA [auth 0]IPR001790Large ribosomal subunit protein uL10Family
ZA [auth 0]IPR030670Large ribosomal subunit protein uL10, eukaryotesFamily
ZA [auth 0]IPR043164Large ribosomal subunit protein uL10-like, insertion domain superfamilyHomologous Superfamily
ZA [auth 0]IPR040637Large ribosomal subunit protein uL10-like, insertion domainDomain
BB [auth v]IPR014722Large ribosomal subunit protein uL2, domain 2Homologous Superfamily
BB [auth v]IPR020189Translation elongation factor, IF5A C-terminalDomain
BB [auth v]IPR008991Translation protein SH3-like domain superfamilyHomologous Superfamily
BB [auth v]IPR019769Translation elongation factor, IF5A, hypusine sitePTM
BB [auth v]IPR001884Translation elongation factor IF5A-likeFamily
BB [auth v]IPR048670Translation initiation factor 5A-like, N-terminalDomain
BB [auth v]IPR012340Nucleic acid-binding, OB-foldHomologous Superfamily
IPR028877Large ribosomal subunit protein eL20Family
IPR023573Large ribosomal subunit protein eL20 domainDomain
IPR021138Large ribosomal subunit protein eL20, eukaryotesFamily
IPR018259Large ribosomal subunit protein eL21, conserved siteConserved Site
IPR036948Large ribosomal subunit protein eL21 superfamilyHomologous Superfamily
IPR001147Large ribosomal subunit protein eL21Family
IPR008991Translation protein SH3-like domain superfamilyHomologous Superfamily
IPR002671Large ribosomal subunit protein eL22Family
IPR038526Large ribosomal subunit protein eL22 superfamilyHomologous Superfamily
IPR036853Large ribosomal subunit protein uL14 superfamilyHomologous Superfamily
IPR000218Large ribosomal subunit protein uL14Family
IPR019972Large ribosomal subunit protein uL14, conserved siteConserved Site