Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

ChainsDomain InfoClassFoldSuperfamilyFamilyDomainSpeciesProvenance Source (Version)
A [auth o]d7ddqo_ Membrane and cell surface proteins and peptides Light-harvesting complex subunits Light-harvesting complex subunits automated matches automated matches (Phaeovulum veldkampii DSM 11550 ) [TaxId: 1185920 ], SCOPe (2.08)
C [auth t]d7ddqt_ Membrane and cell surface proteins and peptides Light-harvesting complex subunits Light-harvesting complex subunits automated matches automated matches (Phaeovulum veldkampii DSM 11550 ) [TaxId: 1185920 ], SCOPe (2.08)
EA [auth g]d7ddqg_ Membrane and cell surface proteins and peptides Light-harvesting complex subunits Light-harvesting complex subunits automated matches automated matches (Phaeovulum veldkampii DSM 11550 ) [TaxId: 1185920 ], SCOPe (2.08)
G [auth a]d7ddqa_ Membrane and cell surface proteins and peptides Light-harvesting complex subunits Light-harvesting complex subunits automated matches automated matches (Phaeovulum veldkampii DSM 11550 ) [TaxId: 1185920 ], SCOPe (2.08)
GA [auth d]d7ddqd_ Membrane and cell surface proteins and peptides Light-harvesting complex subunits Light-harvesting complex subunits automated matches automated matches (Phaeovulum veldkampii DSM 11550 ) [TaxId: 1185920 ], SCOPe (2.08)
Q [auth u]d7ddqu_ Membrane and cell surface proteins and peptides Light-harvesting complex subunits Light-harvesting complex subunits automated matches automated matches (Phaeovulum veldkampii DSM 11550 ) [TaxId: 1185920 ], SCOPe (2.08)
T [auth s]d7ddqs_ Membrane and cell surface proteins and peptides Light-harvesting complex subunits Light-harvesting complex subunits automated matches automated matches (Phaeovulum veldkampii DSM 11550 ) [TaxId: 1185920 ], SCOPe (2.08)
V [auth n]d7ddqn_ Membrane and cell surface proteins and peptides Light-harvesting complex subunits Light-harvesting complex subunits automated matches automated matches (Phaeovulum veldkampii DSM 11550 ) [TaxId: 1185920 ], SCOPe (2.08)
AA [auth I]d7ddqi_ Membrane and cell surface proteins and peptides Light-harvesting complex subunits Light-harvesting complex subunits Light-harvesting complex subunits automated matches (Phaeovulum veldkampii DSM 11550 ) [TaxId: 1185920 ], SCOPe (2.08)
FA [auth F]d7ddqf_ Membrane and cell surface proteins and peptides Light-harvesting complex subunits Light-harvesting complex subunits Light-harvesting complex subunits automated matches (Phaeovulum veldkampii DSM 11550 ) [TaxId: 1185920 ], SCOPe (2.08)
HA [auth B]d7ddqb_ Membrane and cell surface proteins and peptides Light-harvesting complex subunits Light-harvesting complex subunits Light-harvesting complex subunits automated matches (Phaeovulum veldkampii DSM 11550 ) [TaxId: 1185920 ], SCOPe (2.08)
N [auth J]d7ddqj_ Membrane and cell surface proteins and peptides Light-harvesting complex subunits Light-harvesting complex subunits Light-harvesting complex subunits automated matches (Phaeovulum veldkampii DSM 11550 ) [TaxId: 1185920 ], SCOPe (2.08)
P [auth E]d7ddqe_ Membrane and cell surface proteins and peptides Light-harvesting complex subunits Light-harvesting complex subunits Light-harvesting complex subunits automated matches (Phaeovulum veldkampii DSM 11550 ) [TaxId: 1185920 ], SCOPe (2.08)
U [auth R]d7ddqr_ Membrane and cell surface proteins and peptides Light-harvesting complex subunits Light-harvesting complex subunits Light-harvesting complex subunits automated matches (Phaeovulum veldkampii DSM 11550 ) [TaxId: 1185920 ], SCOPe (2.08)
W [auth K]d7ddqk_ Membrane and cell surface proteins and peptides Light-harvesting complex subunits Light-harvesting complex subunits Light-harvesting complex subunits automated matches (Phaeovulum veldkampii DSM 11550 ) [TaxId: 1185920 ], SCOPe (2.08)
BA [auth L]d7ddql_ Membrane and cell surface proteins and peptides Bacterial photosystem II reaction centre, L and M subunits Bacterial photosystem II reaction centre, L and M subunits Bacterial photosystem II reaction centre, L and M subunits automated matches (Phaeovulum veldkampii DSM 11550 ) [TaxId: 1185920 ], SCOPe (2.08)
CA [auth M]d7ddqm_ Membrane and cell surface proteins and peptides Bacterial photosystem II reaction centre, L and M subunits Bacterial photosystem II reaction centre, L and M subunits Bacterial photosystem II reaction centre, L and M subunits automated matches (Phaeovulum veldkampii DSM 11550 ) [TaxId: 1185920 ], SCOPe (2.08)
DA [auth H]d7ddqh2 All beta proteins PRC-barrel domain PRC-barrel domain automated matches automated matches (Phaeovulum veldkampii DSM 11550 ) [TaxId: 1185920 ], SCOPe (2.08)
DA [auth H]d7ddqh1 Membrane and cell surface proteins and peptides Single transmembrane helix Photosystem II reaction centre subunit H, transmembrane region automated matches automated matches (Phaeovulum veldkampii DSM 11550 ) [TaxId: 1185920 ], SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
AA [auth I]SCOP2B SuperfamilyLight-harvesting complex subunits 8103819 3000199 SCOP2B (2022-06-29)
B [auth N]SCOP2B SuperfamilyLight-harvesting complex subunits 8103819 3000199 SCOP2B (2022-06-29)
D [auth S]SCOP2B SuperfamilyLight-harvesting complex subunits 8103819 3000199 SCOP2B (2022-06-29)
F [auth O]SCOP2B SuperfamilyLight-harvesting complex subunits 8103819 3000199 SCOP2B (2022-06-29)
FA [auth F]SCOP2B SuperfamilyLight-harvesting complex subunits 8103819 3000199 SCOP2B (2022-06-29)
H [auth U]SCOP2B SuperfamilyLight-harvesting complex subunits 8103819 3000199 SCOP2B (2022-06-29)
HA [auth B]SCOP2B SuperfamilyLight-harvesting complex subunits 8103819 3000199 SCOP2B (2022-06-29)
J [auth D]SCOP2 FamilyLight-harvesting complex subunits 8103818 4003043 SCOP2 (2022-06-29)
J [auth D]SCOP2 SuperfamilyLight-harvesting complex subunits 8103819 3000199 SCOP2 (2022-06-29)
L [auth A]SCOP2B SuperfamilyLight-harvesting complex subunits 8103819 3000199 SCOP2B (2022-06-29)
N [auth J]SCOP2B SuperfamilyLight-harvesting complex subunits 8103819 3000199 SCOP2B (2022-06-29)
P [auth E]SCOP2B SuperfamilyLight-harvesting complex subunits 8103819 3000199 SCOP2B (2022-06-29)
R [auth T]SCOP2B SuperfamilyLight-harvesting complex subunits 8103819 3000199 SCOP2B (2022-06-29)
U [auth R]SCOP2B SuperfamilyLight-harvesting complex subunits 8103819 3000199 SCOP2B (2022-06-29)
W [auth K]SCOP2B SuperfamilyLight-harvesting complex subunits 8103819 3000199 SCOP2B (2022-06-29)
Y [auth G]SCOP2B SuperfamilyLight-harvesting complex subunits 8103819 3000199 SCOP2B (2022-06-29)
BA [auth L]SCOP2 FamilyBacterial photosystem II reaction centre, L and M subunits 8103822 4002035 SCOP2 (2022-06-29)
BA [auth L]SCOP2 SuperfamilyBacterial photosystem II reaction centre, L and M subunits 8103823 3000736 SCOP2 (2022-06-29)
CA [auth M]SCOP2 FamilyBacterial photosystem II reaction centre, L and M subunits 8103820 4002035 SCOP2 (2022-06-29)
CA [auth M]SCOP2 SuperfamilyBacterial photosystem II reaction centre, L and M subunits 8103821 3000736 SCOP2 (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
A [auth o]LHC_likee7ddqo1 A: extended segmentsX: Bacterial light-harvesting complex subunits (From Topology)H: Bacterial light-harvesting complex subunits (From Topology)T: Bacterial light-harvesting complex subunitsF: LHC_likeECOD (1.6)
C [auth t]LHC_likee7ddqt1 A: extended segmentsX: Bacterial light-harvesting complex subunits (From Topology)H: Bacterial light-harvesting complex subunits (From Topology)T: Bacterial light-harvesting complex subunitsF: LHC_likeECOD (1.6)
E [auth r]LHC_likee7ddqr1 A: extended segmentsX: Bacterial light-harvesting complex subunits (From Topology)H: Bacterial light-harvesting complex subunits (From Topology)T: Bacterial light-harvesting complex subunitsF: LHC_likeECOD (1.6)
EA [auth g]LHC_likee7ddqg1 A: extended segmentsX: Bacterial light-harvesting complex subunits (From Topology)H: Bacterial light-harvesting complex subunits (From Topology)T: Bacterial light-harvesting complex subunitsF: LHC_likeECOD (1.6)
G [auth a]LHC_likee7ddqa1 A: extended segmentsX: Bacterial light-harvesting complex subunits (From Topology)H: Bacterial light-harvesting complex subunits (From Topology)T: Bacterial light-harvesting complex subunitsF: LHC_likeECOD (1.6)
GA [auth d]LHC_likee7ddqd1 A: extended segmentsX: Bacterial light-harvesting complex subunits (From Topology)H: Bacterial light-harvesting complex subunits (From Topology)T: Bacterial light-harvesting complex subunitsF: LHC_likeECOD (1.6)
I [auth e]LHC_likee7ddqe1 A: extended segmentsX: Bacterial light-harvesting complex subunits (From Topology)H: Bacterial light-harvesting complex subunits (From Topology)T: Bacterial light-harvesting complex subunitsF: LHC_likeECOD (1.6)
K [auth b]LHC_likee7ddqb1 A: extended segmentsX: Bacterial light-harvesting complex subunits (From Topology)H: Bacterial light-harvesting complex subunits (From Topology)T: Bacterial light-harvesting complex subunitsF: LHC_likeECOD (1.6)
M [auth k]LHC_likee7ddqk1 A: extended segmentsX: Bacterial light-harvesting complex subunits (From Topology)H: Bacterial light-harvesting complex subunits (From Topology)T: Bacterial light-harvesting complex subunitsF: LHC_likeECOD (1.6)
O [auth f]LHC_likee7ddqf1 A: extended segmentsX: Bacterial light-harvesting complex subunits (From Topology)H: Bacterial light-harvesting complex subunits (From Topology)T: Bacterial light-harvesting complex subunitsF: LHC_likeECOD (1.6)
Q [auth u]LHC_likee7ddqu1 A: extended segmentsX: Bacterial light-harvesting complex subunits (From Topology)H: Bacterial light-harvesting complex subunits (From Topology)T: Bacterial light-harvesting complex subunitsF: LHC_likeECOD (1.6)
T [auth s]LHC_likee7ddqs1 A: extended segmentsX: Bacterial light-harvesting complex subunits (From Topology)H: Bacterial light-harvesting complex subunits (From Topology)T: Bacterial light-harvesting complex subunitsF: LHC_likeECOD (1.6)
V [auth n]LHC_likee7ddqn1 A: extended segmentsX: Bacterial light-harvesting complex subunits (From Topology)H: Bacterial light-harvesting complex subunits (From Topology)T: Bacterial light-harvesting complex subunitsF: LHC_likeECOD (1.6)
X [auth i]LHC_likee7ddqi1 A: extended segmentsX: Bacterial light-harvesting complex subunits (From Topology)H: Bacterial light-harvesting complex subunits (From Topology)T: Bacterial light-harvesting complex subunitsF: LHC_likeECOD (1.6)
Z [auth j]LHC_likee7ddqj1 A: extended segmentsX: Bacterial light-harvesting complex subunits (From Topology)H: Bacterial light-harvesting complex subunits (From Topology)T: Bacterial light-harvesting complex subunitsF: LHC_likeECOD (1.6)
AA [auth I]LHC_likee7ddqI1 A: extended segmentsX: Bacterial light-harvesting complex subunits (From Topology)H: Bacterial light-harvesting complex subunits (From Topology)T: Bacterial light-harvesting complex subunitsF: LHC_likeECOD (1.6)
B [auth N]LHC_likee7ddqN1 A: extended segmentsX: Bacterial light-harvesting complex subunits (From Topology)H: Bacterial light-harvesting complex subunits (From Topology)T: Bacterial light-harvesting complex subunitsF: LHC_likeECOD (1.6)
D [auth S]LHC_likee7ddqS1 A: extended segmentsX: Bacterial light-harvesting complex subunits (From Topology)H: Bacterial light-harvesting complex subunits (From Topology)T: Bacterial light-harvesting complex subunitsF: LHC_likeECOD (1.6)
F [auth O]LHC_likee7ddqO1 A: extended segmentsX: Bacterial light-harvesting complex subunits (From Topology)H: Bacterial light-harvesting complex subunits (From Topology)T: Bacterial light-harvesting complex subunitsF: LHC_likeECOD (1.6)
FA [auth F]LHC_likee7ddqF1 A: extended segmentsX: Bacterial light-harvesting complex subunits (From Topology)H: Bacterial light-harvesting complex subunits (From Topology)T: Bacterial light-harvesting complex subunitsF: LHC_likeECOD (1.6)
H [auth U]LHC_likee7ddqU1 A: extended segmentsX: Bacterial light-harvesting complex subunits (From Topology)H: Bacterial light-harvesting complex subunits (From Topology)T: Bacterial light-harvesting complex subunitsF: LHC_likeECOD (1.6)
HA [auth B]LHC_likee7ddqB1 A: extended segmentsX: Bacterial light-harvesting complex subunits (From Topology)H: Bacterial light-harvesting complex subunits (From Topology)T: Bacterial light-harvesting complex subunitsF: LHC_likeECOD (1.6)
J [auth D]LHC_likee7ddqD1 A: extended segmentsX: Bacterial light-harvesting complex subunits (From Topology)H: Bacterial light-harvesting complex subunits (From Topology)T: Bacterial light-harvesting complex subunitsF: LHC_likeECOD (1.6)
L [auth A]LHC_likee7ddqA1 A: extended segmentsX: Bacterial light-harvesting complex subunits (From Topology)H: Bacterial light-harvesting complex subunits (From Topology)T: Bacterial light-harvesting complex subunitsF: LHC_likeECOD (1.6)
N [auth J]LHC_likee7ddqJ1 A: extended segmentsX: Bacterial light-harvesting complex subunits (From Topology)H: Bacterial light-harvesting complex subunits (From Topology)T: Bacterial light-harvesting complex subunitsF: LHC_likeECOD (1.6)
P [auth E]LHC_likee7ddqE1 A: extended segmentsX: Bacterial light-harvesting complex subunits (From Topology)H: Bacterial light-harvesting complex subunits (From Topology)T: Bacterial light-harvesting complex subunitsF: LHC_likeECOD (1.6)
R [auth T]LHC_likee7ddqT1 A: extended segmentsX: Bacterial light-harvesting complex subunits (From Topology)H: Bacterial light-harvesting complex subunits (From Topology)T: Bacterial light-harvesting complex subunitsF: LHC_likeECOD (1.6)
U [auth R]LHC_likee7ddqR1 A: extended segmentsX: Bacterial light-harvesting complex subunits (From Topology)H: Bacterial light-harvesting complex subunits (From Topology)T: Bacterial light-harvesting complex subunitsF: LHC_likeECOD (1.6)
W [auth K]LHC_likee7ddqK1 A: extended segmentsX: Bacterial light-harvesting complex subunits (From Topology)H: Bacterial light-harvesting complex subunits (From Topology)T: Bacterial light-harvesting complex subunitsF: LHC_likeECOD (1.6)
Y [auth G]LHC_likee7ddqG1 A: extended segmentsX: Bacterial light-harvesting complex subunits (From Topology)H: Bacterial light-harvesting complex subunits (From Topology)T: Bacterial light-harvesting complex subunitsF: LHC_likeECOD (1.6)
S [auth X]RhodobacterPufXe7ddqX1 A: extended segmentsX: Intrinsic membrane protein pufX (From Topology)H: Intrinsic membrane protein pufX (From Topology)T: Intrinsic membrane protein pufXF: RhodobacterPufXECOD (1.6)
BA [auth L]Photo_RCe7ddqL1 A: alpha bundlesX: Bacterial photosystem II reaction centre L and M subunits-like (From Topology)H: Bacterial photosystem II reaction centre L and M subunits-like (From Topology)T: Bacterial photosystem II reaction centre L and M subunits-likeF: Photo_RCECOD (1.6)
CA [auth M]Photo_RCe7ddqM1 A: alpha bundlesX: Bacterial photosystem II reaction centre L and M subunits-like (From Topology)H: Bacterial photosystem II reaction centre L and M subunits-like (From Topology)T: Bacterial photosystem II reaction centre L and M subunits-likeF: Photo_RCECOD (1.6)
DA [auth H]PRCH_Ce7ddqH2 A: beta barrelsX: SH3H: PRC-barrel domain (From Topology)T: PRC-barrel domainF: PRCH_CECOD (1.6)
DA [auth H]PRCH_Ne7ddqH1 A: extended segmentsX: Photosystem II reaction centre subunit H, transmembrane region (From Topology)H: Photosystem II reaction centre subunit H, transmembrane region (From Topology)T: Photosystem II reaction centre subunit H, transmembrane regionF: PRCH_NECOD (1.6)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
PF00556Antenna complex alpha/beta subunit (LHC)Antenna complex alpha/beta subunit- Domain
BA [auth L]PF00124Photosynthetic reaction centre protein (Photo_RC)Photosynthetic reaction centre protein- Family
CA [auth M]PF00124Photosynthetic reaction centre protein (Photo_RC)Photosynthetic reaction centre protein- Family
DA [auth H]PF03967Photosynthetic reaction centre, H-chain N-terminal region (PRCH)Photosynthetic reaction centre, H-chain N-terminal region- Family
DA [auth H]PF05239PRC-barrel domain (PRC)PRC-barrel domainThe PRC-barrel is an all beta barrel domain found in photosystem reaction centre subunit H of the purple bacteria and RNA metabolism proteins of the RimM group. PRC-barrels are approximately 80 residues long, and found widely represented in bacteria, ...The PRC-barrel is an all beta barrel domain found in photosystem reaction centre subunit H of the purple bacteria and RNA metabolism proteins of the RimM group. PRC-barrels are approximately 80 residues long, and found widely represented in bacteria, archaea and plants. This domain is also present at the carboxyl terminus of the pan-bacterial protein RimM, which is involved in ribosomal maturation and processing of 16S rRNA. A family of small proteins conserved in all known euryarchaea are composed entirely of a single stand-alone copy of the domain [1].
Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
Antenna pigment protein alpha chain
Antenna pigment protein beta chain
S [auth X]PufX- -
BA [auth L]Photosynthetic reaction center L subunit
CA [auth M]Reaction center protein M chain
DA [auth H]Photosynthetic reaction center subunit H

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
IPR000066Antenna complex, alpha/beta subunitDomain
IPR018332Antenna complex, alpha subunitFamily
IPR002361Antenna complex, alpha subunit conserved siteConserved Site
IPR035889Light-harvesting complexHomologous Superfamily
IPR000066Antenna complex, alpha/beta subunitDomain
IPR023624Antenna complex, beta domain superfamilyHomologous Superfamily
IPR035889Light-harvesting complexHomologous Superfamily
IPR023623Antenna complex, beta subunit, conserved siteConserved Site
IPR002362Light-harvesting protein B beta chainFamily
S [auth X]IPR020169Intrinsic membrane protein family, PufXFamily
BA [auth L]IPR036854Photosystem II protein D1/D2 superfamilyHomologous Superfamily
BA [auth L]IPR000484Photosynthetic reaction centre, L/MFamily
BA [auth L]IPR005871Photosynthetic reaction centre, L subunitFamily
CA [auth M]IPR036854Photosystem II protein D1/D2 superfamilyHomologous Superfamily
CA [auth M]IPR005781Photosynthetic reaction centre, M subunitFamily
CA [auth M]IPR000484Photosynthetic reaction centre, L/MFamily
DA [auth H]IPR014747Bacterial photosynthetic reaction centre, H-chain, C-terminalHomologous Superfamily
DA [auth H]IPR015810Photosynthetic reaction centre, H subunit, N-terminalDomain
DA [auth H]IPR005652Photosynthetic reaction centre, H subunitFamily
DA [auth H]IPR037097Photosynthetic reaction centre, H subunit, N-terminal domain superfamilyHomologous Superfamily
DA [auth H]IPR011033PRC-barrel-like superfamilyHomologous Superfamily
DA [auth H]IPR027275PRC-barrel domainDomain