Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

ChainsDomain InfoClassFoldSuperfamilyFamilyDomainSpeciesProvenance Source (Version)
A [auth o]d7ddqo_ Membrane and cell surface proteins and peptides Light-harvesting complex subunits Light-harvesting complex subunits automated matches automated matches (Phaeovulum veldkampii DSM 11550 ) [TaxId: 1185920 ], SCOPe (2.08)
C [auth t]d7ddqt_ Membrane and cell surface proteins and peptides Light-harvesting complex subunits Light-harvesting complex subunits automated matches automated matches (Phaeovulum veldkampii DSM 11550 ) [TaxId: 1185920 ], SCOPe (2.08)
EA [auth g]d7ddqg_ Membrane and cell surface proteins and peptides Light-harvesting complex subunits Light-harvesting complex subunits automated matches automated matches (Phaeovulum veldkampii DSM 11550 ) [TaxId: 1185920 ], SCOPe (2.08)
G [auth a]d7ddqa_ Membrane and cell surface proteins and peptides Light-harvesting complex subunits Light-harvesting complex subunits automated matches automated matches (Phaeovulum veldkampii DSM 11550 ) [TaxId: 1185920 ], SCOPe (2.08)
GA [auth d]d7ddqd_ Membrane and cell surface proteins and peptides Light-harvesting complex subunits Light-harvesting complex subunits automated matches automated matches (Phaeovulum veldkampii DSM 11550 ) [TaxId: 1185920 ], SCOPe (2.08)
Q [auth u]d7ddqu_ Membrane and cell surface proteins and peptides Light-harvesting complex subunits Light-harvesting complex subunits automated matches automated matches (Phaeovulum veldkampii DSM 11550 ) [TaxId: 1185920 ], SCOPe (2.08)
T [auth s]d7ddqs_ Membrane and cell surface proteins and peptides Light-harvesting complex subunits Light-harvesting complex subunits automated matches automated matches (Phaeovulum veldkampii DSM 11550 ) [TaxId: 1185920 ], SCOPe (2.08)
V [auth n]d7ddqn_ Membrane and cell surface proteins and peptides Light-harvesting complex subunits Light-harvesting complex subunits automated matches automated matches (Phaeovulum veldkampii DSM 11550 ) [TaxId: 1185920 ], SCOPe (2.08)
U [auth R]d7ddqr_ Membrane and cell surface proteins and peptides Light-harvesting complex subunits Light-harvesting complex subunits Light-harvesting complex subunits automated matches (Phaeovulum veldkampii DSM 11550 ) [TaxId: 1185920 ], SCOPe (2.08)
AA [auth I]d7ddqi_ Membrane and cell surface proteins and peptides Light-harvesting complex subunits Light-harvesting complex subunits Light-harvesting complex subunits automated matches (Phaeovulum veldkampii DSM 11550 ) [TaxId: 1185920 ], SCOPe (2.08)
FA [auth F]d7ddqf_ Membrane and cell surface proteins and peptides Light-harvesting complex subunits Light-harvesting complex subunits Light-harvesting complex subunits automated matches (Phaeovulum veldkampii DSM 11550 ) [TaxId: 1185920 ], SCOPe (2.08)
HA [auth B]d7ddqb_ Membrane and cell surface proteins and peptides Light-harvesting complex subunits Light-harvesting complex subunits Light-harvesting complex subunits automated matches (Phaeovulum veldkampii DSM 11550 ) [TaxId: 1185920 ], SCOPe (2.08)
N [auth J]d7ddqj_ Membrane and cell surface proteins and peptides Light-harvesting complex subunits Light-harvesting complex subunits Light-harvesting complex subunits automated matches (Phaeovulum veldkampii DSM 11550 ) [TaxId: 1185920 ], SCOPe (2.08)
P [auth E]d7ddqe_ Membrane and cell surface proteins and peptides Light-harvesting complex subunits Light-harvesting complex subunits Light-harvesting complex subunits automated matches (Phaeovulum veldkampii DSM 11550 ) [TaxId: 1185920 ], SCOPe (2.08)
W [auth K]d7ddqk_ Membrane and cell surface proteins and peptides Light-harvesting complex subunits Light-harvesting complex subunits Light-harvesting complex subunits automated matches (Phaeovulum veldkampii DSM 11550 ) [TaxId: 1185920 ], SCOPe (2.08)
BA [auth L]d7ddql_ Membrane and cell surface proteins and peptides Bacterial photosystem II reaction centre, L and M subunits Bacterial photosystem II reaction centre, L and M subunits Bacterial photosystem II reaction centre, L and M subunits automated matches (Phaeovulum veldkampii DSM 11550 ) [TaxId: 1185920 ], SCOPe (2.08)
CA [auth M]d7ddqm_ Membrane and cell surface proteins and peptides Bacterial photosystem II reaction centre, L and M subunits Bacterial photosystem II reaction centre, L and M subunits Bacterial photosystem II reaction centre, L and M subunits automated matches (Phaeovulum veldkampii DSM 11550 ) [TaxId: 1185920 ], SCOPe (2.08)
DA [auth H]d7ddqh2 All beta proteins PRC-barrel domain PRC-barrel domain automated matches automated matches (Phaeovulum veldkampii DSM 11550 ) [TaxId: 1185920 ], SCOPe (2.08)
DA [auth H]d7ddqh1 Membrane and cell surface proteins and peptides Single transmembrane helix Photosystem II reaction centre subunit H, transmembrane region automated matches automated matches (Phaeovulum veldkampii DSM 11550 ) [TaxId: 1185920 ], SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
R [auth T]SCOP2B SuperfamilyLight-harvesting complex subunits8103819 3000199 SCOP2B (2022-06-29)
U [auth R]SCOP2B SuperfamilyLight-harvesting complex subunits8103819 3000199 SCOP2B (2022-06-29)
Y [auth G]SCOP2B SuperfamilyLight-harvesting complex subunits8103819 3000199 SCOP2B (2022-06-29)
AA [auth I]SCOP2B SuperfamilyLight-harvesting complex subunits8103819 3000199 SCOP2B (2022-06-29)
B [auth N]SCOP2B SuperfamilyLight-harvesting complex subunits8103819 3000199 SCOP2B (2022-06-29)
D [auth S]SCOP2B SuperfamilyLight-harvesting complex subunits8103819 3000199 SCOP2B (2022-06-29)
F [auth O]SCOP2B SuperfamilyLight-harvesting complex subunits8103819 3000199 SCOP2B (2022-06-29)
FA [auth F]SCOP2B SuperfamilyLight-harvesting complex subunits8103819 3000199 SCOP2B (2022-06-29)
H [auth U]SCOP2B SuperfamilyLight-harvesting complex subunits8103819 3000199 SCOP2B (2022-06-29)
HA [auth B]SCOP2B SuperfamilyLight-harvesting complex subunits8103819 3000199 SCOP2B (2022-06-29)
J [auth D]SCOP2 FamilyLight-harvesting complex subunits8103818 4003043 SCOP2 (2022-06-29)
J [auth D]SCOP2 SuperfamilyLight-harvesting complex subunits8103819 3000199 SCOP2 (2022-06-29)
L [auth A]SCOP2B SuperfamilyLight-harvesting complex subunits8103819 3000199 SCOP2B (2022-06-29)
N [auth J]SCOP2B SuperfamilyLight-harvesting complex subunits8103819 3000199 SCOP2B (2022-06-29)
P [auth E]SCOP2B SuperfamilyLight-harvesting complex subunits8103819 3000199 SCOP2B (2022-06-29)
W [auth K]SCOP2B SuperfamilyLight-harvesting complex subunits8103819 3000199 SCOP2B (2022-06-29)
BA [auth L]SCOP2 FamilyBacterial photosystem II reaction centre L and M subunits8103822 4002035 SCOP2 (2022-06-29)
BA [auth L]SCOP2 SuperfamilyBacterial photosystem II reaction centre L and M subunits8103823 3000736 SCOP2 (2022-06-29)
CA [auth M]SCOP2 FamilyBacterial photosystem II reaction centre L and M subunits8103820 4002035 SCOP2 (2022-06-29)
CA [auth M]SCOP2 SuperfamilyBacterial photosystem II reaction centre L and M subunits8103821 3000736 SCOP2 (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
M [auth k]PF00556e7ddqk1 A: extended segmentsX: Bacterial light-harvesting complex subunits (From Topology)H: Bacterial light-harvesting complex subunits (From Topology)T: Bacterial light-harvesting complex subunitsF: PF00556ECOD (1.6)
X [auth i]PF00556e7ddqi1 A: extended segmentsX: Bacterial light-harvesting complex subunits (From Topology)H: Bacterial light-harvesting complex subunits (From Topology)T: Bacterial light-harvesting complex subunitsF: PF00556ECOD (1.6)
Z [auth j]PF00556e7ddqj1 A: extended segmentsX: Bacterial light-harvesting complex subunits (From Topology)H: Bacterial light-harvesting complex subunits (From Topology)T: Bacterial light-harvesting complex subunitsF: PF00556ECOD (1.6)
A [auth o]PF00556e7ddqo1 A: extended segmentsX: Bacterial light-harvesting complex subunits (From Topology)H: Bacterial light-harvesting complex subunits (From Topology)T: Bacterial light-harvesting complex subunitsF: PF00556ECOD (1.6)
C [auth t]PF00556e7ddqt1 A: extended segmentsX: Bacterial light-harvesting complex subunits (From Topology)H: Bacterial light-harvesting complex subunits (From Topology)T: Bacterial light-harvesting complex subunitsF: PF00556ECOD (1.6)
E [auth r]PF00556e7ddqr1 A: extended segmentsX: Bacterial light-harvesting complex subunits (From Topology)H: Bacterial light-harvesting complex subunits (From Topology)T: Bacterial light-harvesting complex subunitsF: PF00556ECOD (1.6)
EA [auth g]PF00556e7ddqg1 A: extended segmentsX: Bacterial light-harvesting complex subunits (From Topology)H: Bacterial light-harvesting complex subunits (From Topology)T: Bacterial light-harvesting complex subunitsF: PF00556ECOD (1.6)
G [auth a]PF00556e7ddqa1 A: extended segmentsX: Bacterial light-harvesting complex subunits (From Topology)H: Bacterial light-harvesting complex subunits (From Topology)T: Bacterial light-harvesting complex subunitsF: PF00556ECOD (1.6)
GA [auth d]PF00556e7ddqd1 A: extended segmentsX: Bacterial light-harvesting complex subunits (From Topology)H: Bacterial light-harvesting complex subunits (From Topology)T: Bacterial light-harvesting complex subunitsF: PF00556ECOD (1.6)
I [auth e]PF00556e7ddqe1 A: extended segmentsX: Bacterial light-harvesting complex subunits (From Topology)H: Bacterial light-harvesting complex subunits (From Topology)T: Bacterial light-harvesting complex subunitsF: PF00556ECOD (1.6)
K [auth b]PF00556e7ddqb1 A: extended segmentsX: Bacterial light-harvesting complex subunits (From Topology)H: Bacterial light-harvesting complex subunits (From Topology)T: Bacterial light-harvesting complex subunitsF: PF00556ECOD (1.6)
O [auth f]PF00556e7ddqf1 A: extended segmentsX: Bacterial light-harvesting complex subunits (From Topology)H: Bacterial light-harvesting complex subunits (From Topology)T: Bacterial light-harvesting complex subunitsF: PF00556ECOD (1.6)
Q [auth u]PF00556e7ddqu1 A: extended segmentsX: Bacterial light-harvesting complex subunits (From Topology)H: Bacterial light-harvesting complex subunits (From Topology)T: Bacterial light-harvesting complex subunitsF: PF00556ECOD (1.6)
T [auth s]PF00556e7ddqs1 A: extended segmentsX: Bacterial light-harvesting complex subunits (From Topology)H: Bacterial light-harvesting complex subunits (From Topology)T: Bacterial light-harvesting complex subunitsF: PF00556ECOD (1.6)
V [auth n]PF00556e7ddqn1 A: extended segmentsX: Bacterial light-harvesting complex subunits (From Topology)H: Bacterial light-harvesting complex subunits (From Topology)T: Bacterial light-harvesting complex subunitsF: PF00556ECOD (1.6)
R [auth T]PF00556e7ddqT1 A: extended segmentsX: Bacterial light-harvesting complex subunits (From Topology)H: Bacterial light-harvesting complex subunits (From Topology)T: Bacterial light-harvesting complex subunitsF: PF00556ECOD (1.6)
U [auth R]PF00556e7ddqR1 A: extended segmentsX: Bacterial light-harvesting complex subunits (From Topology)H: Bacterial light-harvesting complex subunits (From Topology)T: Bacterial light-harvesting complex subunitsF: PF00556ECOD (1.6)
Y [auth G]PF00556e7ddqG1 A: extended segmentsX: Bacterial light-harvesting complex subunits (From Topology)H: Bacterial light-harvesting complex subunits (From Topology)T: Bacterial light-harvesting complex subunitsF: PF00556ECOD (1.6)
AA [auth I]PF00556e7ddqI1 A: extended segmentsX: Bacterial light-harvesting complex subunits (From Topology)H: Bacterial light-harvesting complex subunits (From Topology)T: Bacterial light-harvesting complex subunitsF: PF00556ECOD (1.6)
B [auth N]PF00556e7ddqN1 A: extended segmentsX: Bacterial light-harvesting complex subunits (From Topology)H: Bacterial light-harvesting complex subunits (From Topology)T: Bacterial light-harvesting complex subunitsF: PF00556ECOD (1.6)
D [auth S]PF00556e7ddqS1 A: extended segmentsX: Bacterial light-harvesting complex subunits (From Topology)H: Bacterial light-harvesting complex subunits (From Topology)T: Bacterial light-harvesting complex subunitsF: PF00556ECOD (1.6)
F [auth O]PF00556e7ddqO1 A: extended segmentsX: Bacterial light-harvesting complex subunits (From Topology)H: Bacterial light-harvesting complex subunits (From Topology)T: Bacterial light-harvesting complex subunitsF: PF00556ECOD (1.6)
FA [auth F]PF00556e7ddqF1 A: extended segmentsX: Bacterial light-harvesting complex subunits (From Topology)H: Bacterial light-harvesting complex subunits (From Topology)T: Bacterial light-harvesting complex subunitsF: PF00556ECOD (1.6)
H [auth U]PF00556e7ddqU1 A: extended segmentsX: Bacterial light-harvesting complex subunits (From Topology)H: Bacterial light-harvesting complex subunits (From Topology)T: Bacterial light-harvesting complex subunitsF: PF00556ECOD (1.6)
HA [auth B]PF00556e7ddqB1 A: extended segmentsX: Bacterial light-harvesting complex subunits (From Topology)H: Bacterial light-harvesting complex subunits (From Topology)T: Bacterial light-harvesting complex subunitsF: PF00556ECOD (1.6)
J [auth D]PF00556e7ddqD1 A: extended segmentsX: Bacterial light-harvesting complex subunits (From Topology)H: Bacterial light-harvesting complex subunits (From Topology)T: Bacterial light-harvesting complex subunitsF: PF00556ECOD (1.6)
L [auth A]PF00556e7ddqA1 A: extended segmentsX: Bacterial light-harvesting complex subunits (From Topology)H: Bacterial light-harvesting complex subunits (From Topology)T: Bacterial light-harvesting complex subunitsF: PF00556ECOD (1.6)
N [auth J]PF00556e7ddqJ1 A: extended segmentsX: Bacterial light-harvesting complex subunits (From Topology)H: Bacterial light-harvesting complex subunits (From Topology)T: Bacterial light-harvesting complex subunitsF: PF00556ECOD (1.6)
P [auth E]PF00556e7ddqE1 A: extended segmentsX: Bacterial light-harvesting complex subunits (From Topology)H: Bacterial light-harvesting complex subunits (From Topology)T: Bacterial light-harvesting complex subunitsF: PF00556ECOD (1.6)
W [auth K]PF00556e7ddqK1 A: extended segmentsX: Bacterial light-harvesting complex subunits (From Topology)H: Bacterial light-harvesting complex subunits (From Topology)T: Bacterial light-harvesting complex subunitsF: PF00556ECOD (1.6)
S [auth X]PF11511e7ddqX1 A: extended segmentsX: Intrinsic membrane protein pufX (From Topology)H: Intrinsic membrane protein pufX (From Topology)T: Intrinsic membrane protein pufXF: PF11511ECOD (1.6)
BA [auth L]PF00124e7ddqL1 A: alpha bundlesX: Bacterial photosystem II reaction centre L and M subunits-like (From Topology)H: Bacterial photosystem II reaction centre L and M subunits-like (From Topology)T: Bacterial photosystem II reaction centre L and M subunits-likeF: PF00124ECOD (1.6)
CA [auth M]PF00124e7ddqM1 A: alpha bundlesX: Bacterial photosystem II reaction centre L and M subunits-like (From Topology)H: Bacterial photosystem II reaction centre L and M subunits-like (From Topology)T: Bacterial photosystem II reaction centre L and M subunits-likeF: PF00124ECOD (1.6)
DA [auth H]PF03967,PF05239e7ddqH2 A: beta barrelsX: SH3H: PRC-barrel domain (From Topology)T: PRC-barrel domainF: PF03967,PF05239ECOD (1.6)
DA [auth H]PF03967e7ddqH1 A: extended segmentsX: Photosystem II reaction centre subunit H, transmembrane region (From Topology)H: Photosystem II reaction centre subunit H, transmembrane region (From Topology)T: Photosystem II reaction centre subunit H, transmembrane regionF: PF03967ECOD (1.6)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
PF00556Antenna complex alpha/beta subunit (LHC)Antenna complex alpha/beta subunit- Domain
PF00556Antenna complex alpha/beta subunit (LHC)Antenna complex alpha/beta subunit- Domain
S [auth X]PF11511Intrinsic membrane protein PufX (RhodobacterPufX)Intrinsic membrane protein PufX- Family
BA [auth L]PF00124Photosynthetic reaction centre protein (Photo_RC)Photosynthetic reaction centre protein- Family
CA [auth M]PF00124Photosynthetic reaction centre protein (Photo_RC)Photosynthetic reaction centre protein- Family
DA [auth H]PF03967Photosynthetic reaction centre, H-chain N-terminal region (PRCH)Photosynthetic reaction centre, H-chain N-terminal region- Family
DA [auth H]PF05239PRC-barrel domain (PRC)PRC-barrel domainThe PRC-barrel is an all beta barrel domain found in photosystem reaction centre subunit H of the purple bacteria and RNA metabolism proteins of the RimM group. PRC-barrels are approximately 80 residues long, and found widely represented in bacteria, ...The PRC-barrel is an all beta barrel domain found in photosystem reaction centre subunit H of the purple bacteria and RNA metabolism proteins of the RimM group. PRC-barrels are approximately 80 residues long, and found widely represented in bacteria, archaea and plants. This domain is also present at the carboxyl terminus of the pan-bacterial protein RimM, which is involved in ribosomal maturation and processing of 16S rRNA. A family of small proteins conserved in all known euryarchaea are composed entirely of a single stand-alone copy of the domain [1].
Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
Antenna pigment protein alpha chain
Antenna pigment protein beta chain
S [auth X]PufX- -
BA [auth L]Photosynthetic reaction center L subunit
CA [auth M]Reaction center protein M chain
DA [auth H]Photosynthetic reaction center subunit H

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
IPR000066Antenna complex, alpha/beta subunitDomain
IPR018332Antenna complex, alpha subunitFamily
IPR002361Antenna complex, alpha subunit conserved siteConserved Site
IPR035889Light-harvesting complexHomologous Superfamily
IPR000066Antenna complex, alpha/beta subunitDomain
IPR023624Antenna complex, beta domain superfamilyHomologous Superfamily
IPR035889Light-harvesting complexHomologous Superfamily
IPR023623Antenna complex, beta subunit, conserved siteConserved Site
IPR002362Light-harvesting protein B beta chainFamily
S [auth X]IPR020169Intrinsic membrane protein family, PufXFamily
BA [auth L]IPR036854Photosystem II protein D1/D2 superfamilyHomologous Superfamily
BA [auth L]IPR000484Photosynthetic reaction centre, L/MFamily
BA [auth L]IPR005871Photosynthetic reaction centre, L subunitFamily
CA [auth M]IPR036854Photosystem II protein D1/D2 superfamilyHomologous Superfamily
CA [auth M]IPR005781Photosynthetic reaction centre, M subunitFamily
CA [auth M]IPR000484Photosynthetic reaction centre, L/MFamily
DA [auth H]IPR014747Bacterial photosynthetic reaction centre, H-chain, C-terminalHomologous Superfamily
DA [auth H]IPR015810Photosynthetic reaction centre, H subunit, N-terminalDomain
DA [auth H]IPR005652Photosynthetic reaction centre, H subunitFamily
DA [auth H]IPR037097Photosynthetic reaction centre, H subunit, N-terminal domain superfamilyHomologous Superfamily
DA [auth H]IPR011033PRC-barrel-like superfamilyHomologous Superfamily
DA [auth H]IPR027275PRC-barrel domainDomain