Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
BSCOP2B SuperfamilyCore histone-like8070545 3001387 SCOP2B (2022-06-29)
FSCOP2B SuperfamilyCore histone-like8070545 3001387 SCOP2B (2022-06-29)
CSCOP2B SuperfamilyCore histone-like8067138 3001387 SCOP2B (2022-06-29)
GSCOP2B SuperfamilyCore histone-like8067138 3001387 SCOP2B (2022-06-29)
DSCOP2B SuperfamilyCore histone-like8066267 3001387 SCOP2B (2022-06-29)
T [auth h]SCOP2B SuperfamilyCore histone-like8066267 3001387 SCOP2B (2022-06-29)
MSCOP2B SuperfamilyRas-like P-loop GTPases8092489 3002022 SCOP2B (2022-06-29)
ASCOP2B SuperfamilyCore histone-like8070539 3001387 SCOP2B (2022-06-29)
ESCOP2B SuperfamilyCore histone-like8070539 3001387 SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
BPF15511e7yyhB1 A: alpha arraysX: Histone-likeH: Histone-relatedT: HistoneF: PF15511ECOD (1.6)
FPF15511e7yyhF1 A: alpha arraysX: Histone-likeH: Histone-relatedT: HistoneF: PF15511ECOD (1.6)
CPF00125,PF16211e7yyhC1 A: alpha arraysX: Histone-likeH: Histone-relatedT: HistoneF: PF00125,PF16211ECOD (1.6)
GPF00125,PF16211e7yyhG1 A: alpha arraysX: Histone-likeH: Histone-relatedT: HistoneF: PF00125,PF16211ECOD (1.6)
DPF00125e7yyhD1 A: alpha arraysX: Histone-likeH: Histone-relatedT: HistoneF: PF00125ECOD (1.6)
T [auth h]PF00125e7yyhh1 A: alpha arraysX: Histone-likeH: Histone-relatedT: HistoneF: PF00125ECOD (1.6)
MPF11111e7yyhM1 A: a/b three-layered sandwichesX: P-loop domains-likeH: P-loop domains-relatedT: P-loop containing nucleoside triphosphate hydrolasesF: PF11111ECOD (1.6)
APF00125e7yyhA1 A: alpha arraysX: Histone-likeH: Histone-relatedT: HistoneF: PF00125ECOD (1.6)
EPF00125e7yyhE1 A: alpha arraysX: Histone-likeH: Histone-relatedT: HistoneF: PF00125ECOD (1.6)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
B, F
PF15511Centromere kinetochore component CENP-T histone fold (CENP-T_C)Centromere kinetochore component CENP-T histone foldCENP-T is a family of vertebral kinetochore proteins that associates directly with CENP-W. The N-terminus of CENP-T proteins interacts directly with the Ndc80 complex in the outer kinetochore. Importantly, the CENP-T-W complex does not directly asso ...CENP-T is a family of vertebral kinetochore proteins that associates directly with CENP-W. The N-terminus of CENP-T proteins interacts directly with the Ndc80 complex in the outer kinetochore. Importantly, the CENP-T-W complex does not directly associate with CENP-A, but with histone H3 in the centromere region. CENP-T and -W form a hetero-tetramer with CENP-S and -X and bind to a ~100 bp region of nucleosome-free DNA forming a nucleosome-like structure. The DNA-CENP-T-W-S-X complex is likely to be associated with histone H3-containing nucleosomes rather than with CENP-nucleosomes. This domain is the C-terminal histone fold domain of CENP-T, which associates with chromatin [2-3].
Domain
C, G
PF16211C-terminus of histone H2A (Histone_H2A_C)C-terminus of histone H2A- Family
C, G
PF00125Core histone H2A/H2B/H3/H4 (Histone)Core histone H2A/H2B/H3/H4- Domain
D,
T [auth h]
PF00125Core histone H2A/H2B/H3/H4 (Histone)Core histone H2A/H2B/H3/H4- Domain
PF05837Centromere protein H (CENP-H) (CENP-H)Centromere protein H (CENP-H)This family consists of several eukaryotic centromere protein H (CENP-H) sequences. Macromolecular centromere-kinetochore complex plays a critical role in sister chromatid separation, but its complete protein composition as well as its precise dynami ...This family consists of several eukaryotic centromere protein H (CENP-H) sequences. Macromolecular centromere-kinetochore complex plays a critical role in sister chromatid separation, but its complete protein composition as well as its precise dynamic function during mitosis has not yet been clearly determined. CENP-H contains a coiled-coil structure and a nuclear localisation signal. CENP-H is specifically and constitutively localised in kinetochores throughout the cell cycle. CENP-H may play a role in kinetochore organisation and function throughout the cell cycle [1]. This the C-terminus of the region, which is conserved from fungi to humans.
Domain
PF11802Centromere-associated protein K (CENP-K)Centromere-associated protein K- Family
PF13092Kinetochore complex Sim4 subunit Fta1 (CENP-L)Kinetochore complex Sim4 subunit Fta1- Family
PF11111Centromere protein M (CENP-M) (CENP-M)Centromere protein M (CENP-M)- Family
PF05238Kinetochore protein CHL4 like (CENP-N)Kinetochore protein CHL4 like- Family
PF09496Cenp-O kinetochore centromere component (CENP-O)Cenp-O kinetochore centromere component- Family
PF13096CENP-A-nucleosome distal (CAD) centromere subunit, CENP-P (CENP-P)CENP-A-nucleosome distal (CAD) centromere subunit, CENP-P- Family
S [auth U]PF13097CENP-A nucleosome associated complex (NAC) subunit (CENP-U)CENP-A nucleosome associated complex (NAC) subunit- Family
U [auth k],
V [auth l]
PF15620Centromere assembly component CENP-C middle DNMT3B-binding region (CENP-C_mid)Centromere assembly component CENP-C middle DNMT3B-binding region- Family
A, E
PF00125Core histone H2A/H2B/H3/H4 (Histone)Core histone H2A/H2B/H3/H4- Domain
PF13094CENP-Q, a CENPA-CAD centromere complex subunit (CENP-Q)CENP-Q, a CENPA-CAD centromere complex subunit- Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
B, F
Histone H4
C, G
Histone H2A type 1-C
D,
T [auth h]
Histone H2B type 1-C/E/F/G/I
Centromere protein H
Centromere protein K-
Centromere protein L-
Centromere protein M-
Centromere protein N-
Centromere protein O-
Centromere protein P-
S [auth U]Centromere protein U-
U [auth k],
V [auth l]
Centromere protein C
A, E
Histone H3-like centromeric protein A
Centromere protein Q-
Centromere protein R-
W [auth i]DNA (171-MER)---
Centromere protein I-
DNA (171-MER)---

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
B, F
IPR009072Histone-foldHomologous Superfamily
B, F
IPR035425CENP-T/Histone H4, histone foldDomain
B, F
IPR001951Histone H4Family
B, F
IPR019809Histone H4, conserved siteConserved Site
B, F
IPR004823TATA box binding protein associated factor (TAF), histone-like fold domainDomain
C, G
IPR009072Histone-foldHomologous Superfamily
C, G
IPR007125Histone H2A/H2B/H3Domain
C, G
IPR002119Histone H2AFamily
C, G
IPR032454Histone H2A, C-terminal domainDomain
C, G
IPR032458Histone H2A conserved siteConserved Site
D,
T [auth h]
IPR009072Histone-foldHomologous Superfamily
D,
T [auth h]
IPR007125Histone H2A/H2B/H3Domain
D,
T [auth h]
IPR000558Histone H2BFamily
IPR008426Centromere protein H, C-terminalDomain
IPR040034Centromere protein HFamily
IPR020993Centromere protein Cenp-KFamily
IPR025204Centromere subunit LFamily
IPR020987Centromere protein Cenp-MFamily
IPR027417P-loop containing nucleoside triphosphate hydrolaseHomologous Superfamily
IPR007902Centromere protein Chl4/mis15/CENP-NFamily
IPR018464Centromere protein OFamily
IPR027801Centromere protein PFamily
S [auth U]IPR025214Centromere protein UFamily
U [auth k],
V [auth l]
IPR028052Kinetochore assembly subunit CENP-C, N-terminal domainDomain
U [auth k],
V [auth l]
IPR025974Mif2/CENP-C cupin domainDomain
U [auth k],
V [auth l]
IPR028386Centromere protein C/Mif2/cnp3Family
U [auth k],
V [auth l]
IPR028931CENP-C, middle DNMT3B-binding domainDomain
U [auth k],
V [auth l]
IPR014710RmlC-like jelly roll foldHomologous Superfamily
U [auth k],
V [auth l]
IPR011051RmlC-like cupin domain superfamilyHomologous Superfamily
A, E
IPR009072Histone-foldHomologous Superfamily
A, E
IPR007125Histone H2A/H2B/H3Domain
A, E
IPR000164Histone H3/CENP-AFamily
IPR025212Centromere protein QFamily
IPR009601Centromere protein RFamily
IPR012485Centromere protein IFamily

Pharos: Disease Associations Pharos Homepage Annotation

ChainsDrug Target  Associated Disease
B, F
PharosP62805
C, G
PharosQ93077
D,
T [auth h]
PharosP62807
PharosQ9H3R5
PharosQ9BS16
PharosQ8N0S6
PharosQ9NSP4
PharosQ96H22
PharosQ9BU64
PharosQ6IPU0
S [auth U]PharosQ71F23
U [auth k],
V [auth l]
PharosQ03188
A, E
PharosP49450
PharosQ7L2Z9
PharosQ13352
PharosQ92674