7XNX
High resolution cry-EM structure of the human 80S ribosome from SNORD127+/+ Kasumi-1 cells
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
WA [auth SD] | SCOP2B Superfamily | Prokaryotic type KH domain (KH-domain type II) | 8043545 | 3001043 | SCOP2B (2022-06-29) |
IB [auth SU] | SCOP2B Superfamily | Ribosomal protein S10 | 8098806 | 3001336 | SCOP2B (2022-06-29) |
LB [auth Sa] | SCOP2B Superfamily | Glucocorticoid receptor-like (DNA-binding domain) | 8053143 | 3000068 | SCOP2B (2022-06-29) |
SB [auth SM] | SCOP2B Superfamily | L30e-like | 8063978 | 3001739 | SCOP2B (2022-06-29) |
TB [auth SN] | SCOP2B Superfamily | S15/NS1 RNA-binding domain | 8052959 | 3001284 | SCOP2B (2022-06-29) |
TB [auth SN] | SCOP2B Superfamily | Homeodomain-like | 8052958 | 3000001 | SCOP2B (2022-06-29) |
K [auth LH] | SCOP2B Superfamily | Ribosomal protein L6 | 8033688 | 3000724 | SCOP2B (2022-06-29) |
M [auth LJ] | SCOP2B Superfamily | RL5-like | 8073892 | 3001709 | SCOP2B (2022-06-29) |
N [auth LL] | SCOP2B Superfamily | Ribosomal protein L13e-like | 8053155 | 3002162 | SCOP2B (2022-06-29) |
P [auth LN] | SCOP2B Superfamily | Ribosomal proteins S24e L23 and L15e | 8098812 | 3000210 | SCOP2B (2022-06-29) |
R [auth LP] | SCOP2B Superfamily | Ribosomal protein L22 | 8076704 | 3001078 | SCOP2B (2022-06-29) |
S [auth LQ] | SCOP2B Superfamily | Ribosomal proteins L15p and L18e | 8095977 | 3001045 | SCOP2B (2022-06-29) |
W [auth LU] | SCOP2B Superfamily | 60S Ribosomal protein L22e | 8053060 | 3002158 | SCOP2B (2022-06-29) |
X [auth LV] | SCOP2B Superfamily | 50S Ribosomal protein L14-like | 8072050 | 3000433 | SCOP2B (2022-06-29) |
Z [auth LX] | SCOP2B Superfamily | Ribosomal proteins S24e L23 and L15e | 8095967 | 3000210 | SCOP2B (2022-06-29) |
AA [auth LY] | SCOP2B Superfamily | Translation proteins SH3-like KOW motif containing domain | 8076756 | 3000334 | SCOP2B (2022-06-29) |
DA [auth Lb] | SCOP2B Superfamily | Ribosomal protein L29e | 8053036 | 3002157 | SCOP2B (2022-06-29) |
EA [auth Lc] | SCOP2B Superfamily | L30e-like | 8077491 | 3001739 | SCOP2B (2022-06-29) |
HA [auth Lf] | SCOP2B Superfamily | Translational proteins | 8087455 | 3000811 | SCOP2B (2022-06-29) |
IA [auth Lg] | SCOP2B Superfamily | Ribosomal protein L34e-like | 8053540 | 3002203 | SCOP2B (2022-06-29) |
KA [auth Li] | SCOP2B Superfamily | Ribosomal protein L36e | 8053120 | 3002161 | SCOP2B (2022-06-29) |
MA [auth Lk] | SCOP2B Superfamily | Ribosomal L38e protein-like | 8053567 | 3002206 | SCOP2B (2022-06-29) |
NA [auth Ll] | SCOP2B Superfamily | Ribosomal protein L39e | 8095603 | 3001756 | SCOP2B (2022-06-29) |
RA [auth Lp] | SCOP2B Superfamily | Zn-binding ribosomal proteins | 8101551 | 3001320 | SCOP2B (2022-06-29) |
UA [auth SA] | SCOP2B Superfamily | SIS domain/Ribosomal protein S2-like | 8052791 | 3001397 | SCOP2B (2022-06-29) |
VA [auth SB] | SCOP2B Superfamily | Ribosomal S3Ae-like | 8053212 | 3002166 | SCOP2B (2022-06-29) |
XA [auth SE] | SCOP2B Superfamily | Nucleic acid-binding proteins | 8052756 | 3000135 | SCOP2B (2022-06-29) |
XA [auth SE] | SCOP2B Superfamily | Alpha-L RNA-binding motif | 8052755 | 3001473 | SCOP2B (2022-06-29) |
XA [auth SE] | SCOP2B Superfamily | Translation proteins SH3-like KOW motif containing domain | 8052757 | 3000334 | SCOP2B (2022-06-29) |
E [auth LB] | SCOP2B Superfamily | Translational proteins | 8078351 | 3000811 | SCOP2B (2022-06-29) |
YA [auth SF] | SCOP2B Superfamily | Ribosomal protein S7 | 8066003 | 3000799 | SCOP2B (2022-06-29) |
AB [auth SI] | SCOP2B Superfamily | 50S Ribosomal protein L14-like | 8053077 | 3000433 | SCOP2B (2022-06-29) |
BB [auth SK] | SCOP2B Superfamily | Winged helix DNA-binding domain | 8055714 | 3000034 | SCOP2B (2022-06-29) |
CB [auth SL] | SCOP2B Superfamily | Nucleic acid-binding proteins | 8052717 | 3000135 | SCOP2B (2022-06-29) |
CB [auth SL] | SCOP2B Superfamily | Ribosomal S17 N-terminal domain-like | 8052715 | 3002138 | SCOP2B (2022-06-29) |
EB [auth SQ] | SCOP2B Superfamily | Ribosomal protein S5 domain 2-like | 8082685 | 3000100 | SCOP2B (2022-06-29) |
GB [auth SS] | SCOP2B Superfamily | S13-like H2TH domain | 8101555 | 3000053 | SCOP2B (2022-06-29) |
HB [auth ST] | SCOP2B Superfamily | Winged helix DNA-binding domain | 8089318 | 3000034 | SCOP2B (2022-06-29) |
F [auth LC] | SCOP2B Superfamily | Ribosomal protein L4 | 8052832 | 3001146 | SCOP2B (2022-06-29) |
F [auth LC] | SCOP2B Superfamily | 60S ribosomal protein L4 C-terminal domain-like | 8052831 | 3002143 | SCOP2B (2022-06-29) |
JB [auth SV] | SCOP2B Superfamily | Glucocorticoid receptor-like (DNA-binding domain) | 8053139 | 3000068 | SCOP2B (2022-06-29) |
MB [auth Sc] | SCOP2B Superfamily | Nucleic acid-binding proteins | 8063426 | 3000135 | SCOP2B (2022-06-29) |
NB [auth Sd] | SCOP2B Superfamily | Glucocorticoid receptor-like (DNA-binding domain) | 8052572 | 3000068 | SCOP2B (2022-06-29) |
QB [auth SG] | SCOP2B Superfamily | GS N-terminal domain-like | 8053171 | 3000408 | SCOP2B (2022-06-29) |
G [auth LD] | SCOP2B Superfamily | Translational machinery components | 8052887 | 3000571 | SCOP2B (2022-06-29) |
UB [auth SO] | SCOP2B Superfamily | Translational machinery components | 8098844 | 3000571 | SCOP2B (2022-06-29) |
VB [auth SW] | SCOP2B Superfamily | Ribosomal protein S8 | 8095469 | 3000709 | SCOP2B (2022-06-29) |
XB [auth SZ] | SCOP2B Superfamily | Winged helix DNA-binding domain | 8090992 | 3000034 | SCOP2B (2022-06-29) |
ZB [auth Se] | SCOP2B Superfamily | Ribosomal protein S30e-like | 8053453 | 3002190 | SCOP2B (2022-06-29) |
H [auth LE] | SCOP2B Superfamily | Translation proteins SH3-like KOW motif containing domain | 8053100 | 3000334 | SCOP2B (2022-06-29) |
H [auth LE] | SCOP2B Superfamily | Ribosomal protein L6e N-terminal domain | 8053099 | 3002160 | SCOP2B (2022-06-29) |
I [auth LF] | SCOP2B Superfamily | Ribosomal L30p/L7e protein N-terminal domain-lke | 8052922 | 3002152 | SCOP2B (2022-06-29) |
I [auth LF] | SCOP2B Superfamily | Ribosomal protein L30p/L7e | 8052923 | 3001378 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
J [auth LG] | PF01248 | e7xnxLG1 | A: a+b three layers | X: Bacillus chorismate mutase-like | H: L30e-like (From Topology) | T: L30e-like | F: PF01248 | ECOD (1.6) |
FA [auth Ld] | PF01198 | e7xnxLd1 | A: a+b two layers | X: Ribosomal protein L31e-like | H: Ribosomal protein L31e/gp120 outer domain (From Topology) | T: Ribosomal protein L31e/gp120 outer domain | F: PF01198 | ECOD (1.6) |
JA [auth Lh] | PF00831 | e7xnxLh1 | A: alpha bundles | X: Long alpha-hairpin | H: Ribosomal protein L29 (L29p) (From Topology) | T: Ribosomal protein L29 (L29p) | F: PF00831 | ECOD (1.6) |
OA [auth Lm] | PF01020 | e7xnxLm1 | A: few secondary structure elements | X: Rubredoxin-like | H: Rubredoxin-related | T: Rubredoxin-related | F: PF01020 | ECOD (1.6) |
WA [auth SD] | PF00189 | e7xnxSD2 | A: a+b two layers | X: T-fold | H: Ribosomal protein S3-C (From Topology) | T: Ribosomal protein S3-C | F: PF00189 | ECOD (1.6) |
WA [auth SD] | PF07650 | e7xnxSD1 | A: a+b two layers | X: Alpha-lytic protease prodomain-like | H: KH-domains | T: Prokaryotic type KH domain (KH-domain type II) | F: PF07650 | ECOD (1.6) |
IB [auth SU] | PF00338 | e7xnxSU1 | A: a+b two layers | X: Alpha-beta plaits | H: Ribosomal protein S10 (From Topology) | T: Ribosomal protein S10 | F: PF00338 | ECOD (1.6) |
KB [auth SX] | PF00164 | e7xnxSX1 | A: beta barrels | X: OB-fold | H: Nucleic acid-binding proteins (From Topology) | T: Nucleic acid-binding proteins | F: PF00164 | ECOD (1.6) |
LB [auth Sa] | PF01283 | e7xnxSa1 | A: few secondary structure elements | X: Glucocorticoid receptor-like | H: LIM domain-like | T: LIM domain-like | F: PF01283 | ECOD (1.6) |
RB [auth SJ] | PF00163,PF01479 | e7xnxSJ1 | A: a+b two layers | X: beta-Grasp | H: Ubiquitin-related | T: Alpha-L RNA-binding motif | F: PF00163,PF01479 | ECOD (1.6) |
SB [auth SM] | PF01248 | e7xnxSM1 | A: a+b three layers | X: Bacillus chorismate mutase-like | H: L30e-like (From Topology) | T: L30e-like | F: PF01248 | ECOD (1.6) |
TB [auth SN] | PF08069 | e7xnxSN1 | A: alpha arrays | X: HTH | H: 40S ribosomal protein S13 N-terminal domain (From Topology) | T: 40S ribosomal protein S13 N-terminal domain | F: PF08069 | ECOD (1.6) |
TB [auth SN] | PF00312 | e7xnxSN2 | A: alpha arrays | X: S15/NS1 RNA-binding domain (From Topology) | H: S15/NS1 RNA-binding domain (From Topology) | T: S15/NS1 RNA-binding domain | F: PF00312 | ECOD (1.6) |
K [auth LH] | PF00347 | e7xnxLH1 | A: a+b two layers | X: Ribosomal protein L6 (From Topology) | H: Ribosomal protein L6 (From Topology) | T: Ribosomal protein L6 | F: PF00347 | ECOD (1.6) |
L [auth LI] | PF00252 | e7xnxLI1 | A: a+b complex topology | X: alpha/beta-Hammerhead/Barrel-sandwich hybrid | H: alpha/beta-Hammerhead/Barrel-sandwich hybrid | T: Ribosomal protein L10e | F: PF00252 | ECOD (1.6) |
M [auth LJ] | PF00281,PF00673 | e7xnxLJ1 | A: a+b two layers | X: Ribosomal protein L5 (From Topology) | H: Ribosomal protein L5 (From Topology) | T: Ribosomal protein L5 | F: PF00281,PF00673 | ECOD (1.6) |
N [auth LL] | PF01294 | e7xnxLL1 | A: extended segments | X: RPL13 (From Topology) | H: RPL13 (From Topology) | T: RPL13 | F: PF01294 | ECOD (1.6) |
O [auth LM] | PF00467,PF01929 | e7xnxLM1 | A: beta barrels | X: SH3 | H: SH3 | T: SH3 | F: PF00467,PF01929 | ECOD (1.6) |
P [auth LN] | PF00827 | e7xnxLN1 | A: a+b two layers | X: Alpha-beta plaits | H: Ribosomal proteins S24e, L23 and L15e (From Topology) | T: Ribosomal proteins S24e, L23 and L15e | F: PF00827 | ECOD (1.6) |
Q [auth LO] | PF00572 | e7xnxLO1 | A: a/b three-layered sandwiches | X: Ribosomal protein L13/L15p/L18e/L32e | H: Ribosomal protein L13 and L16-A (From Topology) | T: Ribosomal protein L13 and L16-A | F: PF00572 | ECOD (1.6) |
R [auth LP] | PF00237 | e7xnxLP1 | A: a+b two layers | X: Enolase-N/ribosomal protein | H: Ribosomal protein L22 (From Topology) | T: Ribosomal protein L22 | F: PF00237 | ECOD (1.6) |
S [auth LQ] | PF17135 | e7xnxLQ1 | A: a/b three-layered sandwiches | X: Ribosomal protein L13/L15p/L18e/L32e | H: Ribosomal proteins L15p and L18e (From Topology) | T: Ribosomal proteins L15p and L18e | F: PF17135 | ECOD (1.6) |
T [auth LR] | PF01280 | e7xnxLR2 | A: alpha arrays | X: Ribosomal protein L19 (L19e) N-terminal domain (From Topology) | H: Ribosomal protein L19 (L19e) N-terminal domain (From Topology) | T: Ribosomal protein L19 (L19e) N-terminal domain | F: PF01280 | ECOD (1.6) |
T [auth LR] | PF01280 | e7xnxLR1 | A: alpha bundles | X: Ribosomal protein L19 (L19e) C-terminal domain (From Topology) | H: Ribosomal protein L19 (L19e) C-terminal domain (From Topology) | T: Ribosomal protein L19 (L19e) C-terminal domain | F: PF01280 | ECOD (1.6) |
U [auth LS] | F_UNCLASSIFIED | e7xnxLS2 | A: a+b two layers | X: GP2-like | H: RplX-like (From Topology) | T: RplX-like | F: F_UNCLASSIFIED | ECOD (1.6) |
U [auth LS] | PF01775 | e7xnxLS1 | A: a+b two layers | X: GP2-like | H: RplX-like (From Topology) | T: RplX-like | F: PF01775 | ECOD (1.6) |
V [auth LT] | PF01157 | e7xnxLT1 | A: beta barrels | X: SH3 | H: SH3 | T: SH3 | F: PF01157 | ECOD (1.6) |
W [auth LU] | PF01776 | e7xnxLU1 | A: a+b two layers | X: Ribosomal protein L22e (From Topology) | H: Ribosomal protein L22e (From Topology) | T: Ribosomal protein L22e | F: PF01776 | ECOD (1.6) |
X [auth LV] | PF00238 | e7xnxLV1 | A: beta barrels | X: Ribosomal protein L14-like | H: Ribosomal protein L14-related (From Topology) | T: Ribosomal protein L14-related | F: PF00238 | ECOD (1.6) |
Y [auth LW] | PF01246 | e7xnxLW1 | A: few secondary structure elements | X: Glucocorticoid receptor-like | H: LIM domain-like | T: LIM domain-like | F: PF01246 | ECOD (1.6) |
Z [auth LX] | PF00276,PF03939 | e7xnxLX1 | A: a+b two layers | X: Alpha-beta plaits | H: Ribosomal proteins S24e, L23 and L15e (From Topology) | T: Ribosomal proteins S24e, L23 and L15e | F: PF00276,PF03939 | ECOD (1.6) |
AA [auth LY] | PF16906 | e7xnxLY1 | A: beta barrels | X: SH3 | H: SH3 | T: SH3 | F: PF16906 | ECOD (1.6) |
BA [auth LZ] | PF00467,PF01777 | e7xnxLZ1 | A: beta barrels | X: SH3 | H: SH3 | T: SH3 | F: PF00467,PF01777 | ECOD (1.6) |
CA [auth La] | PF00828 | e7xnxLa1 | A: a/b three-layered sandwiches | X: Ribosomal protein L13/L15p/L18e/L32e | H: Ribosomal proteins L15p and L18e (From Topology) | T: Ribosomal proteins L15p and L18e | F: PF00828 | ECOD (1.6) |
DA [auth Lb] | PF01779 | e7xnxLb1 | A: extended segments | X: RPL29 (From Topology) | H: RPL29 (From Topology) | T: RPL29 | F: PF01779 | ECOD (1.6) |
EA [auth Lc] | PF01248 | e7xnxLc1 | A: a+b three layers | X: Bacillus chorismate mutase-like | H: L30e-like (From Topology) | T: L30e-like | F: PF01248 | ECOD (1.6) |
GA [auth Le] | PF01655 | e7xnxLe1 | A: a/b three-layered sandwiches | X: Ribosomal protein L13/L15p/L18e/L32e | H: Ribosomal protein L32e (From Topology) | T: Ribosomal protein L32e | F: PF01655 | ECOD (1.6) |
HA [auth Lf] | PF01247 | e7xnxLf1 | A: beta barrels | X: cradle loop barrel | H: RIFT-related | T: Alanine racemase-C | F: PF01247 | ECOD (1.6) |
IA [auth Lg] | PF01199 | e7xnxLg1 | A: few secondary structure elements | X: Glucocorticoid receptor-like | H: RPL34 (From Topology) | T: RPL34 | F: PF01199 | ECOD (1.6) |
KA [auth Li] | PF01158 | e7xnxLi1 | A: alpha arrays | X: 60S ribosomal protein rpL36 (L36e) (From Topology) | H: 60S ribosomal protein rpL36 (L36e) (From Topology) | T: 60S ribosomal protein rpL36 (L36e) | F: PF01158 | ECOD (1.6) |
LA [auth Lj] | PF01907 | e7xnxLj1 | A: few secondary structure elements | X: Rubredoxin-like | H: Rubredoxin-related | T: Rubredoxin-related | F: PF01907 | ECOD (1.6) |
MA [auth Lk] | PF01781 | e7xnxLk1 | A: a+b two layers | X: SRP9/14-like | H: Signal recognition particle alu RNA binding heterodimer SRP9/14-related (From Topology) | T: Signal recognition particle alu RNA binding heterodimer SRP9/14-related | F: PF01781 | ECOD (1.6) |
NA [auth Ll] | PF00832 | e7xnxLl1 | A: extended segments | X: Ribosomal protein L39e (From Topology) | H: Ribosomal protein L39e (From Topology) | T: Ribosomal protein L39e | F: PF00832 | ECOD (1.6) |
D [auth LA] | PF00181 | e7xnxLA2 | A: beta barrels | X: OB-fold | H: Nucleic acid-binding proteins (From Topology) | T: Nucleic acid-binding proteins | F: PF00181 | ECOD (1.6) |
D [auth LA] | PF03947 | e7xnxLA1 | A: beta barrels | X: SH3 | H: SH3 | T: SH3 | F: PF03947 | ECOD (1.6) |
PA [auth Ln] | PF05162 | e7xnxLn1 | A: extended segments | X: Ribosomal protein L41-A (From Topology) | H: Ribosomal protein L41-A (From Topology) | T: Ribosomal protein L41-A | F: PF05162 | ECOD (1.6) |
QA [auth Lo] | PF00935 | e7xnxLo1 | A: few secondary structure elements | X: Rubredoxin-like | H: Rubredoxin-related | T: Rubredoxin-related | F: PF00935 | ECOD (1.6) |
RA [auth Lp] | PF01780 | e7xnxLp1 | A: few secondary structure elements | X: Rubredoxin-like | H: Rubredoxin-related | T: Rubredoxin-related | F: PF01780 | ECOD (1.6) |
SA [auth Lr] | PF01778 | e7xnxLr1 | A: a+b two layers | X: RPL28 (From Topology) | H: RPL28 (From Topology) | T: RPL28 | F: PF01778 | ECOD (1.6) |
UA [auth SA] | PF00318,PF16122 | e7xnxSA1 | A: a/b three-layered sandwiches | X: Flavodoxin-like | H: Ribosomal protein S2/SIS domain (From Topology) | T: Ribosomal protein S2/SIS domain | F: PF00318,PF16122 | ECOD (1.6) |
VA [auth SB] | PF01015 | e7xnxSB2 | A: beta barrels | X: Ribosomal protein L25-like | H: 40S ribosomal protein S3A N-terminal domain (From Topology) | T: 40S ribosomal protein S3A N-terminal domain | F: PF01015 | ECOD (1.6) |
VA [auth SB] | PF01015 | e7xnxSB1 | A: a+b two layers | X: T-fold | H: 40S ribosomal protein S3A C-terminal domain (From Topology) | T: 40S ribosomal protein S3A C-terminal domain | F: PF01015 | ECOD (1.6) |
XA [auth SE] | PF00900 | e7xnxSE2 | A: beta barrels | X: OB-fold | H: Nucleic acid-binding proteins (From Topology) | T: Nucleic acid-binding proteins | F: PF00900 | ECOD (1.6) |
XA [auth SE] | PF00467,PF16121 | e7xnxSE3 | A: beta barrels | X: SH3 | H: SH3 | T: SH3 | F: PF00467,PF16121 | ECOD (1.6) |
XA [auth SE] | PF00900,PF01479,PF08071 | e7xnxSE1 | A: a+b two layers | X: beta-Grasp | H: Ubiquitin-related | T: Alpha-L RNA-binding motif | F: PF00900,PF01479,PF08071 | ECOD (1.6) |
E [auth LB] | PF00297 | e7xnxLB1 | A: beta barrels | X: cradle loop barrel | H: RIFT-related | T: Alanine racemase-C | F: PF00297 | ECOD (1.6) |
YA [auth SF] | PF00177 | e7xnxSF1 | A: alpha arrays | X: Ribosomal protein S7 (From Topology) | H: Ribosomal protein S7 (From Topology) | T: Ribosomal protein S7 | F: PF00177 | ECOD (1.6) |
ZA [auth SH] | PF01251 | e7xnxSH2 | A: a+b two layers | X: Alpha-lytic protease prodomain-like | H: 40S ribosomal protein S7-A (From Topology) | T: 40S ribosomal protein S7-A | F: PF01251 | ECOD (1.6) |
AB [auth SI] | PF01201 | e7xnxSI1 | A: beta barrels | X: Ribosomal protein L14-like | H: Ribosomal protein L14-related (From Topology) | T: Ribosomal protein L14-related | F: PF01201 | ECOD (1.6) |
BB [auth SK] | PF03501 | e7xnxSK1 | A: alpha arrays | X: HTH | H: HTH | T: winged | F: PF03501 | ECOD (1.6) |
CB [auth SL] | PF00366,PF16205 | e7xnxSL1 | A: beta barrels | X: OB-fold | H: Nucleic acid-binding proteins (From Topology) | T: Nucleic acid-binding proteins | F: PF00366,PF16205 | ECOD (1.6) |
DB [auth SP] | PF00203 | e7xnxSP1 | A: a+b two layers | X: Ribosomal protein S19 (From Topology) | H: Ribosomal protein S19 (From Topology) | T: Ribosomal protein S19 | F: PF00203 | ECOD (1.6) |
EB [auth SQ] | PF00380 | e7xnxSQ1 | A: a+b two layers | X: Ribosomal protein S5 domain 2-like (From Topology) | H: Ribosomal protein S5 domain 2-like (From Topology) | T: Ribosomal protein S5 domain 2-like | F: PF00380 | ECOD (1.6) |
FB [auth SR] | PF00833 | e7xnxSR1 | A: alpha arrays | X: HTH | H: HTH | T: FF domain | F: PF00833 | ECOD (1.6) |
GB [auth SS] | PF00416 | e7xnxSS1 | A: alpha arrays | X: HhH/H2TH | H: H2TH (From Topology) | T: H2TH | F: PF00416 | ECOD (1.6) |
HB [auth ST] | PF01090 | e7xnxST1 | A: alpha arrays | X: HTH | H: HTH | T: winged | F: PF01090 | ECOD (1.6) |
F [auth LC] | PF00573 | e7xnxLC2 | A: a/b three-layered sandwiches | X: Ribosomal protein L4 (From Topology) | H: Ribosomal protein L4 (From Topology) | T: Ribosomal protein L4 | F: PF00573 | ECOD (1.6) |
F [auth LC] | PF14374 | e7xnxLC1 | A: extended segments | X: C-terminal helical region in 60S ribosomal protein L4 (L4p) (From Topology) | H: C-terminal helical region in 60S ribosomal protein L4 (L4p) (From Topology) | T: C-terminal helical region in 60S ribosomal protein L4 (L4p) | F: PF14374 | ECOD (1.6) |
JB [auth SV] | PF01249 | e7xnxSV1 | A: a+b two layers | X: 40S ribosomal protein rpS21 (S21e) (From Topology) | H: 40S ribosomal protein rpS21 (S21e) (From Topology) | T: 40S ribosomal protein rpS21 (S21e) | F: PF01249 | ECOD (1.6) |
MB [auth Sc] | PF01200 | e7xnxSc1 | A: beta barrels | X: OB-fold | H: Nucleic acid-binding proteins (From Topology) | T: Nucleic acid-binding proteins | F: PF01200 | ECOD (1.6) |
NB [auth Sd] | PF00253 | e7xnxSd1 | A: few secondary structure elements | X: Glucocorticoid receptor-like | H: LIM domain-like | T: LIM domain-like | F: PF00253 | ECOD (1.6) |
OB [auth Sg] | PF00400 | e7xnxSg1 | A: beta duplicates or obligate multimers | X: beta-propeller-like | H: beta-propeller | T: 7-bladed | F: PF00400 | ECOD (1.6) |
PB [auth SC] | PF03719 | e7xnxSC3 | A: a+b two layers | X: Ribosomal protein S5 domain 2-like (From Topology) | H: Ribosomal protein S5 domain 2-like (From Topology) | T: Ribosomal protein S5 domain 2-like | F: PF03719 | ECOD (1.6) |
PB [auth SC] | PF00333 | e7xnxSC2 | A: a+b two layers | X: dsRBD-like | H: dsRNA-binding domain-like (From Topology) | T: dsRNA-binding domain-like | F: PF00333 | ECOD (1.6) |
PB [auth SC] | PF00333 | e7xnxSC1 | A: extended segments | X: N-terminal region in 40S ribosomal protein rpS2 (S5p) (From Topology) | H: N-terminal region in 40S ribosomal protein rpS2 (S5p) (From Topology) | T: N-terminal region in 40S ribosomal protein rpS2 (S5p) | F: PF00333 | ECOD (1.6) |
QB [auth SG] | PF01092 | e7xnxSG1 | A: beta barrels | X: Ribosomal protein L25-like | H: Ribosomal protein L25-like (From Topology) | T: Ribosomal protein L25-like | F: PF01092 | ECOD (1.6) |
G [auth LD] | PF14204,PF17144 | e7xnxLD1 | A: mixed a+b and a/b | X: Ribonuclease H-like | H: Ribonuclease H-like (From Topology) | T: Ribonuclease H-like | F: PF14204,PF17144 | ECOD (1.6) |
UB [auth SO] | PF00411 | e7xnxSO1 | A: mixed a+b and a/b | X: Ribonuclease H-like | H: Ribonuclease H-like (From Topology) | T: Ribonuclease H-like | F: PF00411 | ECOD (1.6) |
VB [auth SW] | PF00410 | e7xnxSW2 | A: a+b two layers | X: R3H domain-like | H: Ribosomal protein S8, N-terminal domain (From Topology) | T: Ribosomal protein S8, N-terminal domain | F: PF00410 | ECOD (1.6) |
VB [auth SW] | PF00410 | e7xnxSW1 | A: a+b two layers | X: Ribosomal protein S8, C-terminal domain (From Topology) | H: Ribosomal protein S8, C-terminal domain (From Topology) | T: Ribosomal protein S8, C-terminal domain | F: PF00410 | ECOD (1.6) |
WB [auth SY] | PF01282 | e7xnxSY1 | A: a+b two layers | X: Alpha-beta plaits | H: Ribosomal proteins S24e, L23 and L15e (From Topology) | T: Ribosomal proteins S24e, L23 and L15e | F: PF01282 | ECOD (1.6) |
XB [auth SZ] | PF03297 | e7xnxSZ1 | A: alpha arrays | X: HTH | H: HTH | T: winged | F: PF03297 | ECOD (1.6) |
YB [auth Sb] | PF01667 | e7xnxSb1 | A: few secondary structure elements | X: Rubredoxin-like | H: Rubredoxin-related | T: Rubredoxin-related | F: PF01667 | ECOD (1.6) |
ZB [auth Se] | PF04758 | e7xnxSe1 | A: extended segments | X: 40S ribosomal protein S30 (S30e) (From Topology) | H: 40S ribosomal protein S30 (S30e) (From Topology) | T: 40S ribosomal protein S30 (S30e) | F: PF04758 | ECOD (1.6) |
AC [auth Sf] | PF01599 | e7xnxSf1 | A: few secondary structure elements | X: Rubredoxin-like | H: Rubredoxin-related | T: Rubredoxin-related | F: PF01599 | ECOD (1.6) |
H [auth LE] | PF01159,PF03868 | e7xnxLE1 | A: beta barrels | X: SH3 | H: SH3 | T: SH3 | F: PF01159,PF03868 | ECOD (1.6) |
I [auth LF] | PF00327,PF08079 | e7xnxLF1 | A: a+b two layers | X: Ribosomal protein L30p/L7e (From Topology) | H: Ribosomal protein L30p/L7e (From Topology) | T: Ribosomal protein L30p/L7e | F: PF00327,PF08079 | ECOD (1.6) |
Protein Family Annotation Pfam Database Homepage
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Pharos: Disease Associations Pharos Homepage Annotation
Protein Modification Annotation
Modified Residue(s) | ||
---|---|---|
Chain | Residue(s) | Description |
A [auth L1] | 1MA | Parent Component: A |
A [auth L1] | 2MG | Parent Component: G |
A [auth L1] | 5MC | Parent Component: C |
A [auth L1] | 6MZ | Parent Component: A |
A [auth L1] | A2M | Parent Component: A |
A [auth L1] | B8H | Parent Component: U |
A [auth L1] | B8T | Parent Component: C |
A [auth L1] | JMH | Parent Component: C |
A [auth L1] | OMC | Parent Component: C |
A [auth L1] | OMG | Parent Component: G |
A [auth L1] | OMU | Parent Component: U |
A [auth L1] | PSU | Parent Component: U |
A [auth L1] | UR3 | Parent Component: U |
A [auth L1] | UY1 | |
C [auth L3] | OMG | Parent Component: G |
C [auth L3] | OMU | Parent Component: U |
QA [auth Lo] | MLZ | Parent Component: LYS :  AA0076 :  N6-methyl-L-lysine MOD:00085 |
TA [auth S2] | 4AC | AA0076 | : 
TA [auth S2] | 5MC | Parent Component: C :  AA0076 |
TA [auth S2] | 5MU | Parent Component: U :  AA0076 |
TA [auth S2] | 6MZ | Parent Component: A :  AA0076 |
TA [auth S2] | A2M | Parent Component: A :  AA0076 |
TA [auth S2] | B8N | AA0076 | : 
TA [auth S2] | JMH | Parent Component: C |
TA [auth S2] | M7A | Parent Component: A :  AA0076 |
TA [auth S2] | MA6 | Parent Component: A :  AA0076 |
TA [auth S2] | OMC | Parent Component: C :  AA0076 |
TA [auth S2] | OMG | Parent Component: G :  AA0076 |
TA [auth S2] | OMU | Parent Component: U :  AA0076 |
TA [auth S2] | PSU | Parent Component: U :  AA0076 |
TA [auth S2] | UR3 | Parent Component: U :  AA0076 |
TA [auth S2] | UY1 | AA0076 | :