Annotations: 7X3T

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
E	SCOP2B Superfamily	Core histone-like	8041272	3001387	SCOP2B (2022-06-29)
L [auth K]	SCOP2B Superfamily	Core histone-like	8041272	3001387	SCOP2B (2022-06-29)
P [auth O]	SCOP2B Superfamily	Core histone-like	8041272	3001387	SCOP2B (2022-06-29)
A	SCOP2B Superfamily	Core histone-like	8041272	3001387	SCOP2B (2022-06-29)
B	SCOP2B Superfamily	Core histone-like	8042439	3001387	SCOP2B (2022-06-29)
F	SCOP2B Superfamily	Core histone-like	8042439	3001387	SCOP2B (2022-06-29)
Q [auth P]	SCOP2B Superfamily	Core histone-like	8042439	3001387	SCOP2B (2022-06-29)
M [auth L]	SCOP2B Superfamily	Core histone-like	8042439	3001387	SCOP2B (2022-06-29)
C	SCOP2B Superfamily	Core histone-like	8041278	3001387	SCOP2B (2022-06-29)
G	SCOP2B Superfamily	Core histone-like	8041278	3001387	SCOP2B (2022-06-29)
R [auth Q]	SCOP2B Superfamily	Core histone-like	8041278	3001387	SCOP2B (2022-06-29)
N [auth M]	SCOP2B Superfamily	Core histone-like	8041278	3001387	SCOP2B (2022-06-29)
D	SCOP2B Superfamily	Core histone-like	8041279	3001387	SCOP2B (2022-06-29)
H	SCOP2B Superfamily	Core histone-like	8041279	3001387	SCOP2B (2022-06-29)
S [auth R]	SCOP2B Superfamily	Core histone-like	8041279	3001387	SCOP2B (2022-06-29)
O [auth N]	SCOP2B Superfamily	Core histone-like	8041279	3001387	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
E	PF00125	e7x3tE1	A: alpha arrays	X: Histone-like	H: Histone-related	T: Histone	F: PF00125	ECOD (1.6)
L [auth K]	PF00125	e7x3tK1	A: alpha arrays	X: Histone-like	H: Histone-related	T: Histone	F: PF00125	ECOD (1.6)
P [auth O]	PF00125	e7x3tO1	A: alpha arrays	X: Histone-like	H: Histone-related	T: Histone	F: PF00125	ECOD (1.6)
A	PF00125	e7x3tA1	A: alpha arrays	X: Histone-like	H: Histone-related	T: Histone	F: PF00125	ECOD (1.6)
B	PF15511	e7x3tB1	A: alpha arrays	X: Histone-like	H: Histone-related	T: Histone	F: PF15511	ECOD (1.6)
F	PF15511	e7x3tF1	A: alpha arrays	X: Histone-like	H: Histone-related	T: Histone	F: PF15511	ECOD (1.6)
Q [auth P]	PF15511	e7x3tP1	A: alpha arrays	X: Histone-like	H: Histone-related	T: Histone	F: PF15511	ECOD (1.6)
M [auth L]	PF15511	e7x3tL1	A: alpha arrays	X: Histone-like	H: Histone-related	T: Histone	F: PF15511	ECOD (1.6)
C	PF00125,PF16211	e7x3tC1	A: alpha arrays	X: Histone-like	H: Histone-related	T: Histone	F: PF00125,PF16211	ECOD (1.6)
G	PF00125,PF16211	e7x3tG1	A: alpha arrays	X: Histone-like	H: Histone-related	T: Histone	F: PF00125,PF16211	ECOD (1.6)
R [auth Q]	PF00125,PF16211	e7x3tQ1	A: alpha arrays	X: Histone-like	H: Histone-related	T: Histone	F: PF00125,PF16211	ECOD (1.6)
N [auth M]	PF00125,PF16211	e7x3tM1	A: alpha arrays	X: Histone-like	H: Histone-related	T: Histone	F: PF00125,PF16211	ECOD (1.6)
D	PF00125	e7x3tD1	A: alpha arrays	X: Histone-like	H: Histone-related	T: Histone	F: PF00125	ECOD (1.6)
H	PF00125	e7x3tH1	A: alpha arrays	X: Histone-like	H: Histone-related	T: Histone	F: PF00125	ECOD (1.6)
S [auth R]	PF00125	e7x3tR1	A: alpha arrays	X: Histone-like	H: Histone-related	T: Histone	F: PF00125	ECOD (1.6)
O [auth N]	PF00125	e7x3tN1	A: alpha arrays	X: Histone-like	H: Histone-related	T: Histone	F: PF00125	ECOD (1.6)
K [auth U]	PF15612	e7x3tU1	A: alpha complex topology	X: ISWI one complex protein 3 (From Topology)	H: ISWI one complex protein 3 (From Topology)	T: ISWI one complex protein 3	F: PF15612	ECOD (1.6)
T [auth V]	F_UNCLASSIFIED	e7x3tV5	A: alpha arrays	X: HTH	H: HTH	T: tri-helical	F: F_UNCLASSIFIED	ECOD (1.6)
T [auth V]	PF09111	e7x3tV3	A: alpha arrays	X: HTH	H: HTH	T: tri-helical	F: PF09111	ECOD (1.6)
T [auth V]	PF09110	e7x3tV4	A: alpha arrays	X: HAND domain of the nucleosome remodeling ATPase ISWI (From Topology)	H: HAND domain of the nucleosome remodeling ATPase ISWI (From Topology)	T: HAND domain of the nucleosome remodeling ATPase ISWI	F: PF09110	ECOD (1.6)
T [auth V]	PF00176	e7x3tV1	A: a/b three-layered sandwiches	X: P-loop domains-like	H: P-loop domains-related	T: P-loop containing nucleoside triphosphate hydrolases	F: PF00176	ECOD (1.6)
T [auth V]	PF00176,PF00271	e7x3tV2	A: a/b three-layered sandwiches	X: P-loop domains-like	H: P-loop domains-related	T: P-loop containing nucleoside triphosphate hydrolases	F: PF00176,PF00271	ECOD (1.6)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
B, F, M [auth L], Q [auth P]	PF15511	Centromere kinetochore component CENP-T histone fold (CENP-T_C)	Centromere kinetochore component CENP-T histone fold	CENP-T is a family of vertebral kinetochore proteins that associates directly with CENP-W. The N-terminus of CENP-T proteins interacts directly with the Ndc80 complex in the outer kinetochore. Importantly, the CENP-T-W complex does not directly asso ...	CENP-T is a family of vertebral kinetochore proteins that associates directly with CENP-W. The N-terminus of CENP-T proteins interacts directly with the Ndc80 complex in the outer kinetochore. Importantly, the CENP-T-W complex does not directly associate with CENP-A, but with histone H3 in the centromere region. CENP-T and -W form a hetero-tetramer with CENP-S and -X and bind to a ~100 bp region of nucleosome-free DNA forming a nucleosome-like structure. The DNA-CENP-T-W-S-X complex is likely to be associated with histone H3-containing nucleosomes rather than with CENP-nucleosomes. This domain is the C-terminal histone fold domain of CENP-T, which associates with chromatin [2-3].	Domain
C, G, N [auth M], R [auth Q]	PF16211	C-terminus of histone H2A (Histone_H2A_C)	C-terminus of histone H2A	-	Family
K [auth U]	PF15612	WSTF, HB1, Itc1p, MBD9 motif 1 (WHIM1)	WSTF, HB1, Itc1p, MBD9 motif 1	-	Motif
T [auth V]	PF09111	SLIDE (SLIDE)	SLIDE	The SLIDE domain adopts a secondary structure comprising a main core of three alpha-helices. It has a role in DNA binding, contacting DNA target sites similar to c-Myb (Pfam:PF00249) repeats or homeodomains [1].	Domain
T [auth V]	PF00271	Helicase conserved C-terminal domain (Helicase_C)	Helicase conserved C-terminal domain	The Prosite family is restricted to DEAD/H helicases, whereas this domain family is found in a wide variety of helicases and helicase related proteins. It may be that this is not an autonomously folding unit, but an integral part of the helicase.	Domain
T [auth V]	PF00176	SNF2-related domain (SNF2-rel_dom)	SNF2-related domain	This domain is found in proteins involved in a variety of processes including transcription regulation (e.g., SNF2, STH1, brahma, MOT1), DNA repair (e.g., ERCC6, RAD16, RAD5), DNA recombination (e.g., RAD54), and chromatin unwinding (e.g., ISWI) as w ...	This domain is found in proteins involved in a variety of processes including transcription regulation (e.g., SNF2, STH1, brahma, MOT1), DNA repair (e.g., ERCC6, RAD16, RAD5), DNA recombination (e.g., RAD54), and chromatin unwinding (e.g., ISWI) as well as a variety of other proteins with little functional information (e.g., lodestar, ETL1)[1,2,3]. SNF2 functions as the ATPase component of the SNF2/SWI multisubunit complex, which utilises energy derived from ATP hydrolysis to disrupt histone-DNA interactions, resulting in the increased accessibility of DNA to transcription factors.	Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, E, L [auth K], P [auth O]	Histone H3	DNA binding binding organic cyclic compound binding nucleic acid binding protein heterodimerization activity protein binding protein dimerization activity structural molecule activity structural constituent of chromatin	-	protein-containing complex intracellular anatomical structure protein-DNA complex nucleosome chromatin chromosome cellular anatomical entity intracellular organelle organelle intracellular non-membrane-bounded organelle non-membrane-bounded organelle membrane-bounded organelle nucleus membrane-enclosed lumen protein-containing complex intracellular anatomical structure protein-DNA complex nucleosome chromatin chromosome cellular anatomical entity intracellular organelle organelle intracellular non-membrane-bounded organelle non-membrane-bounded organelle membrane-bounded organelle nucleus membrane-enclosed lumen intracellular membrane-bounded organelle intracellular organelle lumen nucleoplasm organelle lumen nuclear lumen
B, F, M [auth L], Q [auth P]	Histone H4	DNA binding binding organic cyclic compound binding nucleic acid binding protein heterodimerization activity protein binding protein dimerization activity structural molecule activity structural constituent of chromatin	protein-containing complex organization protein-DNA complex assembly protein-DNA complex organization cellular component organization cellular component biogenesis cellular component assembly chromatin organization protein-containing complex assembly chromatin remodeling cellular process cellular component organization or biogenesis nucleosome assembly nucleosome organization	protein-containing complex intracellular anatomical structure protein-DNA complex nucleosome chromatin chromosome cellular anatomical entity intracellular organelle organelle intracellular non-membrane-bounded organelle non-membrane-bounded organelle membrane-bounded organelle nucleus intracellular membrane-bounded organelle
C, G, N [auth M], R [auth Q]	Histone H2A	DNA binding binding organic cyclic compound binding nucleic acid binding protein heterodimerization activity protein binding protein dimerization activity structural molecule activity structural constituent of chromatin	-	protein-containing complex intracellular anatomical structure protein-DNA complex nucleosome chromatin chromosome cellular anatomical entity intracellular organelle organelle intracellular non-membrane-bounded organelle non-membrane-bounded organelle membrane-bounded organelle nucleus intracellular membrane-bounded organelle
D, H, O [auth N], S [auth R]	Histone H2B 1.1	DNA binding binding organic cyclic compound binding nucleic acid binding protein heterodimerization activity protein binding protein dimerization activity structural molecule activity structural constituent of chromatin	-	protein-containing complex intracellular anatomical structure protein-DNA complex nucleosome chromatin chromosome cellular anatomical entity intracellular organelle organelle intracellular non-membrane-bounded organelle non-membrane-bounded organelle membrane-bounded organelle nucleus intracellular membrane-bounded organelle
I	DNA (343-MER)	-	-	-
J	DNA(343-MER)	-	-	-
K [auth U]	ISWI one complex protein 3	-	cellular component organization organelle organization chromosome organization sister chromatid cohesion cellular process cellular component organization or biogenesis cell cycle cell cycle process regulation of cellular process cellular biosynthetic process RNA metabolic process regulation of primary metabolic process nucleobase-containing compound metabolic process RNA biosynthetic process cellular component organization organelle organization chromosome organization sister chromatid cohesion cellular process cellular component organization or biogenesis cell cycle cell cycle process regulation of cellular process cellular biosynthetic process RNA metabolic process regulation of primary metabolic process nucleobase-containing compound metabolic process RNA biosynthetic process nucleic acid biosynthetic process DNA-templated transcription regulation of RNA metabolic process organic substance metabolic process organic substance biosynthetic process regulation of nucleobase-containing compound metabolic process regulation of RNA biosynthetic process regulation of biosynthetic process regulation of biological process cellular metabolic process biological regulation primary metabolic process regulation of cellular metabolic process regulation of macromolecule metabolic process nucleobase-containing compound biosynthetic process gene expression macromolecule biosynthetic process nucleic acid metabolic process regulation of cellular biosynthetic process organic cyclic compound metabolic process regulation of gene expression biosynthetic process organic cyclic compound biosynthetic process metabolic process regulation of macromolecule biosynthetic process regulation of DNA-templated transcription macromolecule metabolic process regulation of metabolic process protein-DNA complex organization protein-containing complex organization chromatin organization chromatin remodeling	membrane-bounded organelle ATPase complex protein-containing complex intracellular anatomical structure catalytic complex protein-DNA complex nucleus nuclear protein-containing complex chromatin chromosome intracellular membrane-bounded organelle cellular anatomical entity Isw1a complex intracellular organelle membrane-bounded organelle ATPase complex protein-containing complex intracellular anatomical structure catalytic complex protein-DNA complex nucleus nuclear protein-containing complex chromatin chromosome intracellular membrane-bounded organelle cellular anatomical entity Isw1a complex intracellular organelle ISWI-type complex organelle intracellular non-membrane-bounded organelle Isw1 complex SWI/SNF superfamily-type complex non-membrane-bounded organelle
T [auth V]	ISWI chromatin-remodeling complex ATPase ISW1	catalytic activity, acting on a nucleic acid helicase activity catalytic activity ATP-dependent activity protein binding binding histone binding DNA binding sequence-specific DNA binding sequence-specific double-stranded DNA binding transcription cis-regulatory region binding double-stranded DNA binding organic cyclic compound binding nucleic acid binding catalytic activity, acting on a nucleic acid helicase activity catalytic activity ATP-dependent activity protein binding binding histone binding DNA binding sequence-specific DNA binding sequence-specific double-stranded DNA binding transcription cis-regulatory region binding double-stranded DNA binding organic cyclic compound binding nucleic acid binding transcription regulatory region nucleic acid binding ATP-dependent activity, acting on DNA catalytic activity, acting on DNA ATP-dependent chromatin remodeler activity adenyl ribonucleotide binding nucleotide binding purine ribonucleotide binding purine ribonucleoside triphosphate binding nucleoside phosphate binding ion binding purine nucleotide binding anion binding adenyl nucleotide binding ATP binding heterocyclic compound binding carbohydrate derivative binding ribonucleotide binding small molecule binding rDNA binding pyrophosphatase activity ATP hydrolysis activity ribonucleoside triphosphate phosphatase activity hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides hydrolase activity hydrolase activity, acting on acid anhydrides protein-containing complex binding chromatin binding nucleosome binding	regulation of cellular process cellular biosynthetic process RNA metabolic process regulation of transcriptional start site selection at RNA polymerase II promoter regulation of primary metabolic process RNA biosynthetic process nucleobase-containing compound metabolic process nucleic acid biosynthetic process DNA-templated transcription DNA-templated transcriptional start site selection regulation of DNA-templated transcription initiation regulation of RNA metabolic process organic substance metabolic process transcription by RNA polymerase II organic substance biosynthetic process regulation of cellular process cellular biosynthetic process RNA metabolic process regulation of transcriptional start site selection at RNA polymerase II promoter regulation of primary metabolic process RNA biosynthetic process nucleobase-containing compound metabolic process nucleic acid biosynthetic process DNA-templated transcription DNA-templated transcriptional start site selection regulation of DNA-templated transcription initiation regulation of RNA metabolic process organic substance metabolic process transcription by RNA polymerase II organic substance biosynthetic process regulation of nucleobase-containing compound metabolic process transcription initiation at RNA polymerase II promoter regulation of RNA biosynthetic process regulation of biosynthetic process regulation of transcription by RNA polymerase II regulation of biological process cellular metabolic process biological regulation primary metabolic process regulation of cellular metabolic process regulation of macromolecule metabolic process nucleobase-containing compound biosynthetic process gene expression macromolecule biosynthetic process nucleic acid metabolic process DNA-templated transcription initiation regulation of cellular biosynthetic process organic cyclic compound metabolic process regulation of gene expression biosynthetic process organic cyclic compound biosynthetic process transcriptional start site selection at RNA polymerase II promoter metabolic process cellular process regulation of transcription initiation by RNA polymerase II regulation of macromolecule biosynthetic process macromolecule metabolic process regulation of DNA-templated transcription regulation of metabolic process DNA-templated transcription termination termination of RNA polymerase II transcription cellular component organization organelle organization chromosome organization sister chromatid cohesion cellular component organization or biogenesis cell cycle cell cycle process regulation of chromatin organization regulation of cellular component organization protein-containing complex organization protein-DNA complex organization chromatin organization transcription by RNA polymerase I termination of RNA polymerase I transcription DNA-templated transcription elongation chromatin remodeling nucleosome organization response to stimulus response to stress response to heat response to abiotic stimulus response to temperature stimulus positive regulation of macromolecule biosynthetic process positive regulation of metabolic process positive regulation of macromolecule metabolic process positive regulation of nucleobase-containing compound metabolic process positive regulation of transcription by RNA polymerase II positive regulation of RNA metabolic process positive regulation of DNA-templated transcription positive regulation of biological process positive regulation of cellular metabolic process positive regulation of biosynthetic process positive regulation of cellular process positive regulation of RNA biosynthetic process positive regulation of cellular biosynthetic process	membrane-bounded organelle ATPase complex protein-containing complex intracellular anatomical structure catalytic complex protein-DNA complex nucleus nuclear protein-containing complex chromatin chromosome intracellular membrane-bounded organelle cellular anatomical entity Isw1a complex intracellular organelle membrane-bounded organelle ATPase complex protein-containing complex intracellular anatomical structure catalytic complex protein-DNA complex nucleus nuclear protein-containing complex chromatin chromosome intracellular membrane-bounded organelle cellular anatomical entity Isw1a complex intracellular organelle ISWI-type complex organelle intracellular non-membrane-bounded organelle Isw1 complex SWI/SNF superfamily-type complex non-membrane-bounded organelle nucleolar chromatin membrane-enclosed lumen nuclear chromosome nucleolus intracellular organelle lumen organelle lumen nuclear lumen Isw1b complex

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, E, L [auth K], P [auth O]	IPR009072	Histone-fold	Homologous Superfamily
A, E, L [auth K], P [auth O]	IPR007125	Histone H2A/H2B/H3	Domain
A, E, L [auth K], P [auth O]	IPR000164	Histone H3/CENP-A	Family
B, F, M [auth L], Q [auth P]	IPR009072	Histone-fold	Homologous Superfamily
B, F, M [auth L], Q [auth P]	IPR001951	Histone H4	Family
B, F, M [auth L], Q [auth P]	IPR035425	CENP-T/Histone H4, histone fold	Domain
B, F, M [auth L], Q [auth P]	IPR019809	Histone H4, conserved site	Conserved Site
B, F, M [auth L], Q [auth P]	IPR004823	TATA box binding protein associated factor (TAF), histone-like fold domain	Domain
C, G, N [auth M], R [auth Q]	IPR009072	Histone-fold	Homologous Superfamily
C, G, N [auth M], R [auth Q]	IPR007125	Histone H2A/H2B/H3	Domain
C, G, N [auth M], R [auth Q]	IPR002119	Histone H2A	Family
C, G, N [auth M], R [auth Q]	IPR032454	Histone H2A, C-terminal domain	Domain
C, G, N [auth M], R [auth Q]	IPR032458	Histone H2A conserved site	Conserved Site
D, H, O [auth N], S [auth R]	IPR009072	Histone-fold	Homologous Superfamily
D, H, O [auth N], S [auth R]	IPR007125	Histone H2A/H2B/H3	Domain
D, H, O [auth N], S [auth R]	IPR000558	Histone H2B	Family
K [auth U]	IPR028942	WHIM1 domain	Domain
T [auth V]	IPR000330	SNF2, N-terminal	Domain
T [auth V]	IPR015195	SLIDE domain	Domain
T [auth V]	IPR036306	ISWI, HAND domain superfamily	Homologous Superfamily
T [auth V]	IPR049730	SNF2/RAD5-like, C-terminal helicase domain	Domain
T [auth V]	IPR015194	ISWI, HAND domain	Domain
T [auth V]	IPR038718	SNF2-like, N-terminal domain superfamily	Homologous Superfamily
T [auth V]	IPR027417	P-loop containing nucleoside triphosphate hydrolase	Homologous Superfamily
T [auth V]	IPR009057	Homedomain-like superfamily	Homologous Superfamily
T [auth V]	IPR001650	Helicase, C-terminal domain-like	Domain
T [auth V]	IPR044754	Isw1/2, N-terminal	Domain
T [auth V]	IPR014001	Helicase superfamily 1/2, ATP-binding domain	Domain
T [auth V]	IPR017884	SANT domain	Domain
T [auth V]	IPR001005	SANT/Myb domain	Domain