7UML

Structure of vesicular stomatitis virus (local reconstruction, 3.5 A resolution)

External Resource: Annotation

Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
A	SCOP2B Superfamily	Rhabdovirus nucleoprotein-like	8041903	3001763	SCOP2B (2022-06-29)
B	SCOP2B Superfamily	VSV matrix protein	8107266	3001449	SCOP2B (2022-06-29)
C	SCOP2B Superfamily	VSV matrix protein	8107266	3001449	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A	PF00945	e7umlA1	A: alpha complex topology	X: P40 nucleoprotein-like	H: Rhabdovirus nucleocapsid protein (From Topology)	T: Rhabdovirus nucleocapsid protein	F: PF00945	ECOD (1.6)
B	PF06326	e7umlB1	A: a+b complex topology	X: VSV matrix protein (From Topology)	H: VSV matrix protein (From Topology)	T: VSV matrix protein	F: PF06326	ECOD (1.6)
C	PF06326	e7umlC1	A: a+b complex topology	X: VSV matrix protein (From Topology)	H: VSV matrix protein (From Topology)	T: VSV matrix protein	F: PF06326	ECOD (1.6)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, D, E	PF00945	Rhabdovirus nucleocapsid protein (Rhabdo_ncap)	Rhabdovirus nucleocapsid protein	-	Family
B, C, F	PF06326	Vesiculovirus matrix protein (Vesiculo_matrix)	Vesiculovirus matrix protein	-	Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, D, E	Nucleoprotein	RNA binding binding organic cyclic compound binding nucleic acid binding	viral gene expression viral process viral transcription nucleobase-containing compound metabolic process organic cyclic compound metabolic process RNA replication organic substance metabolic process RNA metabolic process metabolic process primary metabolic process macromolecule metabolic process nucleic acid metabolic process	protein-containing complex ribonucleoprotein complex viral nucleocapsid viral capsid virion component host cellular component host intracellular part host cell cytoplasm host cell part host intracellular region cellular anatomical entity helical viral capsid
B, C, F	Matrix protein	structural constituent of virion structural molecule activity	phosphorylation cellular metabolic process phosphate-containing compound metabolic process metabolic process cellular process phosphorus metabolic process symbiont-mediated perturbation of host cellular process biological process involved in interspecies interaction between organisms biological process involved in interaction with host biological process involved in symbiotic interaction symbiont-mediated suppression of host transcription symbiont-mediated suppression of host gene expression modulation by symbiont of host process symbiont-mediated perturbation of host gene expression phosphorylation cellular metabolic process phosphate-containing compound metabolic process metabolic process cellular process phosphorus metabolic process symbiont-mediated perturbation of host cellular process biological process involved in interspecies interaction between organisms biological process involved in interaction with host biological process involved in symbiotic interaction symbiont-mediated suppression of host transcription symbiont-mediated suppression of host gene expression modulation by symbiont of host process symbiont-mediated perturbation of host gene expression symbiont-mediated perturbation of host transcription modulation of process of another organism symbiont-mediated suppression of host transcription initiation from RNA polymerase II promoter symbiont-mediated suppression of host mRNA export from nucleus virion assembly viral process viral budding viral budding via host ESCRT complex viral life cycle	host intracellular membrane-bounded organelle host cellular component host intracellular part host cell nuclear membrane host cell membrane cellular anatomical entity host cell nucleus host cell nuclear part host intracellular organelle host cell part host cell endomembrane system host intracellular region host cell nuclear envelope virion component host intracellular membrane-bounded organelle host cellular component host intracellular part host cell nuclear membrane host cell membrane cellular anatomical entity host cell nucleus host cell nuclear part host intracellular organelle host cell part host cell endomembrane system host intracellular region host cell nuclear envelope virion component viral membrane viral envelope membrane virion membrane host cell cytoplasm
G [auth R]	RNA (5'-R(PUPUPUPUPUPUPUPUPUPUPUPUP*U)-3')	-	-	-

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, D, E	IPR035961	Rhabdovirus nucleoprotein-like	Homologous Superfamily
A, D, E	IPR000448	Rhabdovirus nucleocapsid	Domain
A, D, E	IPR023330	Rhabdovirus nucleocapsid, N-terminal	Homologous Superfamily
A, D, E	IPR023331	Rhabdovirus nucleocapsid, C-terminal	Homologous Superfamily
B, C, F	IPR009397	Vesiculovirus matrix	Family
B, C, F	IPR036711	VSV matrix superfamily	Homologous Superfamily

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM133198.