7TUT

Structure of the rabbit 80S ribosome stalled on a 4-TMD Rhodopsin intermediate in complex with the multipass translocon

External Resource: Annotation

Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification
Membrane Protein Annotation: mpstruc

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
B [auth C]	SCOP2B Superfamily	Ribosomal protein L4	8052829	3001146	SCOP2B (2022-06-29)
B [auth C]	SCOP2B Superfamily	60S ribosomal protein L4 C-terminal domain-like	8052828	3002143	SCOP2B (2022-06-29)
C [auth D]	SCOP2B Superfamily	Translational machinery components	8052886	3000571	SCOP2B (2022-06-29)
H [auth I]	SCOP2B Superfamily	Ribosomal protein L16p/L10e	8097320	3000884	SCOP2B (2022-06-29)
I [auth J]	SCOP2B Superfamily	RL5-like	8073894	3001709	SCOP2B (2022-06-29)
N [auth P]	SCOP2B Superfamily	Ribosomal protein L22	8097828	3001078	SCOP2B (2022-06-29)
S [auth U]	SCOP2B Superfamily	60S Ribosomal protein L22e	8061156	3002158	SCOP2B (2022-06-29)
T [auth V]	SCOP2B Superfamily	50S Ribosomal protein L14-like	8072048	3000433	SCOP2B (2022-06-29)
V [auth X]	SCOP2B Superfamily	Ribosomal proteins S24e L23 and L15e	8095966	3000210	SCOP2B (2022-06-29)
X [auth Z]	SCOP2B Superfamily	Translation proteins SH3-like KOW motif containing domain	8053047	3000334	SCOP2B (2022-06-29)
Y [auth a]	SCOP2B Superfamily	Ribosomal proteins L15p and L18e	8097818	3001045	SCOP2B (2022-06-29)
CA [auth e]	SCOP2B Superfamily	Ribosomal protein L32e	8102090	3000982	SCOP2B (2022-06-29)
DA [auth f]	SCOP2B Superfamily	Translational proteins	8093714	3000811	SCOP2B (2022-06-29)
GA [auth i]	SCOP2B Superfamily	Ribosomal protein L36e	8053119	3002161	SCOP2B (2022-06-29)
IA [auth k]	SCOP2B Superfamily	Ribosomal L38e protein-like	8093716	3002206	SCOP2B (2022-06-29)
NA [auth p]	SCOP2B Superfamily	Zn-binding ribosomal proteins	8101435	3001320	SCOP2B (2022-06-29)
SA [auth w]	SCOP2B Superfamily	Translational proteins	8078357	3000811	SCOP2B (2022-06-29)
UA [auth 1]	SCOP2B Superfamily	SecY-like	8056967	3000333	SCOP2B (2022-06-29)
L [auth N]	SCOP2B Superfamily	Ribosomal proteins S24e L23 and L15e	8082477	3000210	SCOP2B (2022-06-29)
W [auth Y]	SCOP2B Superfamily	Translation proteins SH3-like KOW motif containing domain	8076754	3000334	SCOP2B (2022-06-29)
AA [auth c]	SCOP2B Superfamily	L30e-like	8094953	3001739	SCOP2B (2022-06-29)
EA [auth g]	SCOP2B Superfamily	Ribosomal protein L34e-like	8053543	3002203	SCOP2B (2022-06-29)
JA [auth l]	SCOP2B Superfamily	Ribosomal protein L39e	8095597	3001756	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A	PF00181	e7tutA2	A: beta barrels	X: OB-fold	H: Nucleic acid-binding proteins (From Topology)	T: Nucleic acid-binding proteins	F: PF00181	ECOD (1.6)
A	PF03947	e7tutA1	A: beta barrels	X: SH3	H: SH3	T: SH3	F: PF03947	ECOD (1.6)
B [auth C]	PF00573	e7tutC2	A: a/b three-layered sandwiches	X: Ribosomal protein L4 (From Topology)	H: Ribosomal protein L4 (From Topology)	T: Ribosomal protein L4	F: PF00573	ECOD (1.6)
B [auth C]	PF14374	e7tutC1	A: extended segments	X: C-terminal helical region in 60S ribosomal protein L4 (L4p) (From Topology)	H: C-terminal helical region in 60S ribosomal protein L4 (L4p) (From Topology)	T: C-terminal helical region in 60S ribosomal protein L4 (L4p)	F: PF14374	ECOD (1.6)
C [auth D]	PF14204,PF17144	e7tutD1	A: mixed a+b and a/b	X: Ribonuclease H-like	H: Ribonuclease H-like (From Topology)	T: Ribonuclease H-like	F: PF14204,PF17144	ECOD (1.6)
E [auth F]	PF00327,PF08079	e7tutF1	A: a+b two layers	X: Ribosomal protein L30p/L7e (From Topology)	H: Ribosomal protein L30p/L7e (From Topology)	T: Ribosomal protein L30p/L7e	F: PF00327,PF08079	ECOD (1.6)
F [auth G]	PF01248	e7tutG1	A: a+b three layers	X: Bacillus chorismate mutase-like	H: L30e-like (From Topology)	T: L30e-like	F: PF01248	ECOD (1.6)
H [auth I]	PF00252	e7tutI1	A: a+b complex topology	X: alpha/beta-Hammerhead/Barrel-sandwich hybrid	H: alpha/beta-Hammerhead/Barrel-sandwich hybrid	T: Ribosomal protein L10e	F: PF00252	ECOD (1.6)
I [auth J]	PF00281,PF00673	e7tutJ1	A: a+b two layers	X: Ribosomal protein L5 (From Topology)	H: Ribosomal protein L5 (From Topology)	T: Ribosomal protein L5	F: PF00281,PF00673	ECOD (1.6)
K [auth M]	PF00467,PF01929	e7tutM1	A: beta barrels	X: SH3	H: SH3	T: SH3	F: PF00467,PF01929	ECOD (1.6)
M [auth O]	PF00572	e7tutO1	A: a/b three-layered sandwiches	X: Ribosomal protein L13/L15p/L18e/L32e	H: Ribosomal protein L13 and L16-A (From Topology)	T: Ribosomal protein L13 and L16-A	F: PF00572	ECOD (1.6)
N [auth P]	PF00237	e7tutP1	A: a+b two layers	X: Enolase-N/ribosomal protein	H: Ribosomal protein L22 (From Topology)	T: Ribosomal protein L22	F: PF00237	ECOD (1.6)
O [auth Q]	PF17135	e7tutQ1	A: a/b three-layered sandwiches	X: Ribosomal protein L13/L15p/L18e/L32e	H: Ribosomal proteins L15p and L18e (From Topology)	T: Ribosomal proteins L15p and L18e	F: PF17135	ECOD (1.6)
R [auth T]	PF01157	e7tutT1	A: beta barrels	X: SH3	H: SH3	T: SH3	F: PF01157	ECOD (1.6)
S [auth U]	PF01776	e7tutU1	A: a+b two layers	X: Ribosomal protein L22e (From Topology)	H: Ribosomal protein L22e (From Topology)	T: Ribosomal protein L22e	F: PF01776	ECOD (1.6)
T [auth V]	PF00238	e7tutV1	A: beta barrels	X: Ribosomal protein L14-like	H: Ribosomal protein L14-related (From Topology)	T: Ribosomal protein L14-related	F: PF00238	ECOD (1.6)
V [auth X]	PF00276,PF03939	e7tutX1	A: a+b two layers	X: Alpha-beta plaits	H: Ribosomal proteins S24e, L23 and L15e (From Topology)	T: Ribosomal proteins S24e, L23 and L15e	F: PF00276,PF03939	ECOD (1.6)
X [auth Z]	PF00467,PF01777	e7tutZ1	A: beta barrels	X: SH3	H: SH3	T: SH3	F: PF00467,PF01777	ECOD (1.6)
Y [auth a]	PF00828	e7tuta1	A: a/b three-layered sandwiches	X: Ribosomal protein L13/L15p/L18e/L32e	H: Ribosomal proteins L15p and L18e (From Topology)	T: Ribosomal proteins L15p and L18e	F: PF00828	ECOD (1.6)
BA [auth d]	PF01198	e7tutd1	A: a+b two layers	X: Ribosomal protein L31e-like	H: Ribosomal protein L31e/gp120 outer domain (From Topology)	T: Ribosomal protein L31e/gp120 outer domain	F: PF01198	ECOD (1.6)
CA [auth e]	PF01655	e7tute1	A: a/b three-layered sandwiches	X: Ribosomal protein L13/L15p/L18e/L32e	H: Ribosomal protein L32e (From Topology)	T: Ribosomal protein L32e	F: PF01655	ECOD (1.6)
DA [auth f]	PF01247	e7tutf1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: Alanine racemase-C	F: PF01247	ECOD (1.6)
FA [auth h]	PF00831	e7tuth1	A: alpha bundles	X: Long alpha-hairpin	H: Ribosomal protein L29 (L29p) (From Topology)	T: Ribosomal protein L29 (L29p)	F: PF00831	ECOD (1.6)
GA [auth i]	PF01158	e7tuti1	A: alpha arrays	X: 60S ribosomal protein rpL36 (L36e) (From Topology)	H: 60S ribosomal protein rpL36 (L36e) (From Topology)	T: 60S ribosomal protein rpL36 (L36e)	F: PF01158	ECOD (1.6)
IA [auth k]	PF01781	e7tutk1	A: a+b two layers	X: SRP9/14-like	H: Signal recognition particle alu RNA binding heterodimer SRP9/14-related (From Topology)	T: Signal recognition particle alu RNA binding heterodimer SRP9/14-related	F: PF01781	ECOD (1.6)
LA [auth n]	PF05162	e7tutn1	A: extended segments	X: Ribosomal protein L41-A (From Topology)	H: Ribosomal protein L41-A (From Topology)	T: Ribosomal protein L41-A	F: PF05162	ECOD (1.6)
MA [auth o]	PF00935	e7tuto1	A: few secondary structure elements	X: Rubredoxin-like	H: Rubredoxin-related	T: Rubredoxin-related	F: PF00935	ECOD (1.6)
NA [auth p]	PF01780	e7tutp1	A: few secondary structure elements	X: Rubredoxin-like	H: Rubredoxin-related	T: Rubredoxin-related	F: PF01780	ECOD (1.6)
SA [auth w]	PF00297	e7tutw1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: Alanine racemase-C	F: PF00297	ECOD (1.6)
UA [auth 1]	PF00344,PF10559	e7tut11	A: alpha complex topology	X: Preprotein translocase SecY subunit (From Topology)	H: Preprotein translocase SecY subunit (From Topology)	T: Preprotein translocase SecY subunit	F: PF00344,PF10559	ECOD (1.6)
VA [auth 2]	PF03911	e7tut21	A: extended segments	X: Sec-beta subunit (From Topology)	H: Sec-beta subunit (From Topology)	T: Sec-beta subunit	F: PF03911	ECOD (1.6)
WA [auth 3]	PF00584	e7tut31	A: extended segments	X: Preprotein translocase SecE subunit (From Topology)	H: Preprotein translocase SecE subunit (From Topology)	T: Preprotein translocase SecE subunit	F: PF00584	ECOD (1.6)
BB [auth 8]	F_UNCLASSIFIED	e7tut82	A: alpha bundles	X: Golgi to ER traffic protein 1 cytosolic domain (From Topology)	H: Golgi to ER traffic protein 1 cytosolic domain (From Topology)	T: Golgi to ER traffic protein 1 cytosolic domain	F: F_UNCLASSIFIED	ECOD (1.6)
BB [auth 8]	PF01956	e7tut81	A: alpha bundles	X: Membrane protein insertase YidC-related (From Homology)	H: Membrane protein insertase YidC-related	T: DUF106	F: PF01956	ECOD (1.6)
J [auth L]	PF01294	e7tutL1	A: extended segments	X: RPL13 (From Topology)	H: RPL13 (From Topology)	T: RPL13	F: PF01294	ECOD (1.6)
L [auth N]	PF00827	e7tutN1	A: a+b two layers	X: Alpha-beta plaits	H: Ribosomal proteins S24e, L23 and L15e (From Topology)	T: Ribosomal proteins S24e, L23 and L15e	F: PF00827	ECOD (1.6)
P [auth R]	PF01280	e7tutR2	A: alpha arrays	X: Ribosomal protein L19 (L19e) N-terminal domain (From Topology)	H: Ribosomal protein L19 (L19e) N-terminal domain (From Topology)	T: Ribosomal protein L19 (L19e) N-terminal domain	F: PF01280	ECOD (1.6)
P [auth R]	PF01280	e7tutR1	A: alpha bundles	X: Ribosomal protein L19 (L19e) C-terminal domain (From Topology)	H: Ribosomal protein L19 (L19e) C-terminal domain (From Topology)	T: Ribosomal protein L19 (L19e) C-terminal domain	F: PF01280	ECOD (1.6)
Q [auth S]	F_UNCLASSIFIED	e7tutS2	A: a+b two layers	X: GP2-like	H: RplX-like (From Topology)	T: RplX-like	F: F_UNCLASSIFIED	ECOD (1.6)
Q [auth S]	PF01775	e7tutS1	A: a+b two layers	X: GP2-like	H: RplX-like (From Topology)	T: RplX-like	F: PF01775	ECOD (1.6)
U [auth W]	PF01246	e7tutW1	A: few secondary structure elements	X: Glucocorticoid receptor-like	H: LIM domain-like	T: LIM domain-like	F: PF01246	ECOD (1.6)
W [auth Y]	PF16906	e7tutY1	A: beta barrels	X: SH3	H: SH3	T: SH3	F: PF16906	ECOD (1.6)
Z [auth b]	PF01779	e7tutb1	A: extended segments	X: RPL29 (From Topology)	H: RPL29 (From Topology)	T: RPL29	F: PF01779	ECOD (1.6)
AA [auth c]	PF01248	e7tutc1	A: a+b three layers	X: Bacillus chorismate mutase-like	H: L30e-like (From Topology)	T: L30e-like	F: PF01248	ECOD (1.6)
EA [auth g]	PF01199	e7tutg1	A: few secondary structure elements	X: Glucocorticoid receptor-like	H: RPL34 (From Topology)	T: RPL34	F: PF01199	ECOD (1.6)
HA [auth j]	PF01907	e7tutj1	A: few secondary structure elements	X: Rubredoxin-like	H: Rubredoxin-related	T: Rubredoxin-related	F: PF01907	ECOD (1.6)
JA [auth l]	PF00832	e7tutl1	A: extended segments	X: Ribosomal protein L39e (From Topology)	H: Ribosomal protein L39e (From Topology)	T: Ribosomal protein L39e	F: PF00832	ECOD (1.6)
KA [auth m]	PF01020	e7tutm1	A: few secondary structure elements	X: Rubredoxin-like	H: Rubredoxin-related	T: Rubredoxin-related	F: PF01020	ECOD (1.6)
D [auth E]	PF01159,PF03868	e7tutE1	A: beta barrels	X: SH3	H: SH3	T: SH3	F: PF01159,PF03868	ECOD (1.6)
PA [auth r]	PF01778	e7tutr1	A: a+b two layers	X: RPL28 (From Topology)	H: RPL28 (From Topology)	T: RPL28	F: PF01778	ECOD (1.6)
G [auth H]	PF00347	e7tutH1	A: a+b two layers	X: Ribosomal protein L6 (From Topology)	H: Ribosomal protein L6 (From Topology)	T: Ribosomal protein L6	F: PF00347	ECOD (1.6)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A	PF03947	Ribosomal Proteins L2, C-terminal domain (Ribosomal_L2_C)	Ribosomal Proteins L2, C-terminal domain	-	Domain
A	PF00181	Ribosomal Proteins L2, RNA binding domain (Ribosomal_L2)	Ribosomal Proteins L2, RNA binding domain	-	Domain
B [auth C]	PF14374	60S ribosomal protein L4 C-terminal domain (Ribos_L4_asso_C)	60S ribosomal protein L4 C-terminal domain	This family is found at the very C-terminal of 60 ribosomal L4 proteins.	Domain
B [auth C]	PF00573	Ribosomal protein L4/L1 family (Ribosomal_L4)	Ribosomal protein L4/L1 family	-	Family
C [auth D]	PF17144	Ribosomal large subunit proteins 60S L5, and 50S L18 (Ribosomal_L5e)	Ribosomal large subunit proteins 60S L5, and 50S L18	-	Family
C [auth D]	PF14204	Ribosomal L18 C-terminal region (Ribosomal_L18_c)	Ribosomal L18 C-terminal region	This domain is the C-terminal end of ribosomal L18/L5 proteins.	Domain
E [auth F]	PF08079	Ribosomal L30 N-terminal domain (Ribosomal_L30_N)	Ribosomal L30 N-terminal domain	This presumed domain is found at the N-terminus of Ribosomal L30 proteins and has been termed RL30NT or NUC018 [1].	Domain
E [auth F]	PF00327	Ribosomal protein L30p/L7e (Ribosomal_L30)	Ribosomal protein L30p/L7e	This family includes prokaryotic L30 and eukaryotic L7.	Domain
F [auth G]	PF01248	Ribosomal protein L7Ae/L30e/S12e/Gadd45 family (Ribosomal_L7Ae)	Ribosomal protein L7Ae/L30e/S12e/Gadd45 family	This family includes: Ribosomal L7A from metazoa, Ribosomal L8-A and L8-B from fungi, 30S ribosomal protein HS6 from archaebacteria, 40S ribosomal protein S12 from eukaryotes, Ribosomal protein L30 from eukaryotes and archaebacteria. Gadd45 and MyD11 ...	This family includes: Ribosomal L7A from metazoa, Ribosomal L8-A and L8-B from fungi, 30S ribosomal protein HS6 from archaebacteria, 40S ribosomal protein S12 from eukaryotes, Ribosomal protein L30 from eukaryotes and archaebacteria. Gadd45 and MyD118 [1].	Domain
H [auth I]	PF00252	Ribosomal protein L16p/L10e (Ribosomal_L16)	Ribosomal protein L16p/L10e	-	Domain
I [auth J]	PF00281	Ribosomal protein L5 (Ribosomal_L5)	Ribosomal protein L5	-	Domain
I [auth J]	PF00673	ribosomal L5P family C-terminus (Ribosomal_L5_C)	ribosomal L5P family C-terminus	This region is found associated with Pfam:PF00281.	Domain
K [auth M]	PF01929	Ribosomal protein L14 (Ribosomal_L14e)	Ribosomal protein L14	-	Family
N [auth P]	PF00237	Ribosomal protein L22p/L17e (Ribosomal_L22)	Ribosomal protein L22p/L17e	This family includes L22 from prokaryotes and chloroplasts and L17 from eukaryotes.	Domain
R [auth T]	PF01157	Ribosomal protein L21e (Ribosomal_L21e)	Ribosomal protein L21e	-	Family
S [auth U]	PF01776	Ribosomal L22e protein family (Ribosomal_L22e)	Ribosomal L22e protein family	-	Family
T [auth V]	PF00238	Ribosomal protein L14p/L23e (Ribosomal_L14)	Ribosomal protein L14p/L23e	-	Domain
V [auth X]	PF03939	Ribosomal protein L23, N-terminal domain (Ribosomal_L23eN)	Ribosomal protein L23, N-terminal domain	-	Family
V [auth X]	PF00276	Ribosomal protein L23 (Ribosomal_L23)	Ribosomal protein L23	-	Family
X [auth Z]	PF01777	Ribosomal L27e protein family (Ribosomal_L27e)	Ribosomal L27e protein family	-	Family
X [auth Z]	PF00467	KOW motif (KOW)	KOW motif	-	Family
Y [auth a]	PF00828	Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A (Ribosomal_L27A)	Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A	-	Family
BA [auth d]	PF01198	Ribosomal protein L31e (Ribosomal_L31e)	Ribosomal protein L31e	-	Family
CA [auth e]	PF01655	Ribosomal protein L32 (Ribosomal_L32e)	Ribosomal protein L32	-	Family
DA [auth f]	PF01247	Ribosomal protein L35Ae (Ribosomal_L35Ae)	Ribosomal protein L35Ae	-	Domain
FA [auth h]	PF00831	Ribosomal L29 protein (Ribosomal_L29)	Ribosomal L29 protein	-	Family
GA [auth i]	PF01158	Ribosomal protein L36e (Ribosomal_L36e)	Ribosomal protein L36e	-	Family
IA [auth k]	PF01781	Ribosomal L38e protein family (Ribosomal_L38e)	Ribosomal L38e protein family	-	Family
LA [auth n]	PF05162	Ribosomal protein L41 (Ribosomal_L41)	Ribosomal protein L41	-	Family
MA [auth o]	PF00935	Ribosomal protein L44 (Ribosomal_L44)	Ribosomal protein L44	-	Family
NA [auth p]	PF01780	Ribosomal L37ae protein family (Ribosomal_L37ae)	Ribosomal L37ae protein family	-	Family
SA [auth w]	PF00297	Ribosomal protein L3 (Ribosomal_L3)	Ribosomal protein L3	-	Family
UA [auth 1]	PF10559	Plug domain of Sec61p (Plug_translocon)	Plug domain of Sec61p	The Sec61/SecY translocon mediates translocation of proteins across the membrane and integration of membrane proteins into the lipid bilayer. The structure of the translocon revealed a plug domain blocking the pore on the lumenal side.The plug is unl ...	The Sec61/SecY translocon mediates translocation of proteins across the membrane and integration of membrane proteins into the lipid bilayer. The structure of the translocon revealed a plug domain blocking the pore on the lumenal side.The plug is unlikely to be important for sealing the translocation pore in yeast but it plays a role in stabilising Sec61p during translocon formation. The domain runs from residues 52-74 [1].	Domain
UA [auth 1]	PF00344	SecY (SecY)	SecY	-	Family
VA [auth 2]	PF03911	Sec61beta family (Sec61_beta)	Sec61beta family	-	Family
YA [auth 5]	PF03669	PAT complex subunit Asterix (ASTER)	PAT complex subunit Asterix	-	Family
L [auth N]	PF00827	Ribosomal L15 (Ribosomal_L15e)	Ribosomal L15	-	Family
P [auth R]	PF01280	Ribosomal protein L19e (Ribosomal_L19e)	Ribosomal protein L19e	-	Family
U [auth W]	PF01246	Ribosomal protein L24e (Ribosomal_L24e)	Ribosomal protein L24e	-	Domain
W [auth Y]	PF16906	Ribosomal proteins L26 eukaryotic, L24P archaeal (Ribosomal_L26)	Ribosomal proteins L26 eukaryotic, L24P archaeal	-	Family
W [auth Y]	PF00467	KOW motif (KOW)	KOW motif	-	Family
Z [auth b]	PF01779	Ribosomal L29e protein family (Ribosomal_L29e)	Ribosomal L29e protein family	-	Family
AA [auth c]	PF01248	Ribosomal protein L7Ae/L30e/S12e/Gadd45 family (Ribosomal_L7Ae)	Ribosomal protein L7Ae/L30e/S12e/Gadd45 family	This family includes: Ribosomal L7A from metazoa, Ribosomal L8-A and L8-B from fungi, 30S ribosomal protein HS6 from archaebacteria, 40S ribosomal protein S12 from eukaryotes, Ribosomal protein L30 from eukaryotes and archaebacteria. Gadd45 and MyD11 ...	This family includes: Ribosomal L7A from metazoa, Ribosomal L8-A and L8-B from fungi, 30S ribosomal protein HS6 from archaebacteria, 40S ribosomal protein S12 from eukaryotes, Ribosomal protein L30 from eukaryotes and archaebacteria. Gadd45 and MyD118 [1].	Domain
EA [auth g]	PF01199	Ribosomal protein L34e (Ribosomal_L34e)	Ribosomal protein L34e	-	Family
HA [auth j]	PF01907	Ribosomal protein L37e (Ribosomal_L37e)	Ribosomal protein L37e	-	Family
JA [auth l]	PF00832	Ribosomal L39 protein (Ribosomal_L39)	Ribosomal L39 protein	-	Family
KA [auth m]	PF01020	Ribosomal L40e family (Ribosomal_L40e)	Ribosomal L40e family	-	Family
D [auth E]	PF03868	Ribosomal protein L6, N-terminal domain (Ribosomal_L6e_N)	Ribosomal protein L6, N-terminal domain	-	Domain
D [auth E]	PF01159	Ribosomal protein L6e (Ribosomal_L6e)	Ribosomal protein L6e	-	Family
PA [auth r]	PF01778	Ribosomal L28e protein family (Ribosomal_L28e)	Ribosomal L28e protein family	-	Family
XA [auth 4]	PF07946	PAT complex subunit CCDC47 (CCDC47)	PAT complex subunit CCDC47	-	Family
ZA [auth 7]	PF04389	Peptidase family M28 (Peptidase_M28)	Peptidase family M28	-	Family
AB [auth 6]	PF09767	Predicted membrane protein (DUF2053) (DUF2053)	Predicted membrane protein (DUF2053)	-	Family
G [auth H]	PF00347	Ribosomal protein L6 (Ribosomal_L6)	Ribosomal protein L6	-	Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A	uL2	-	-	-
B [auth C]	uL4	-	-	-
C [auth D]	uL18	-	-	-
E [auth F]	uL30	RNA binding binding organic cyclic compound binding nucleic acid binding structural molecule activity structural constituent of ribosome	ribonucleoprotein complex biogenesis cellular biosynthetic process RNA metabolic process rRNA processing cellular component biogenesis nucleobase-containing compound metabolic process ribosome biogenesis organic substance metabolic process organic substance biosynthetic process cellular component organization or biogenesis RNA processing rRNA metabolic process cellular metabolic process primary metabolic process ribonucleoprotein complex biogenesis cellular biosynthetic process RNA metabolic process rRNA processing cellular component biogenesis nucleobase-containing compound metabolic process ribosome biogenesis organic substance metabolic process organic substance biosynthetic process cellular component organization or biogenesis RNA processing rRNA metabolic process cellular metabolic process primary metabolic process gene expression ribosomal large subunit biogenesis macromolecule biosynthetic process nucleic acid metabolic process maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) organic cyclic compound metabolic process biosynthetic process ncRNA metabolic process nucleic acid catabolic process cellular process metabolic process macromolecule metabolic process maturation of LSU-rRNA	protein-containing complex intracellular anatomical structure cellular anatomical entity intracellular organelle ribosomal subunit cytosolic large ribosomal subunit cytosolic ribosome organelle ribonucleoprotein complex intracellular non-membrane-bounded organelle ribosome cytoplasm cytosol large ribosomal subunit protein-containing complex intracellular anatomical structure cellular anatomical entity intracellular organelle ribosomal subunit cytosolic large ribosomal subunit cytosolic ribosome organelle ribonucleoprotein complex intracellular non-membrane-bounded organelle ribosome cytoplasm cytosol large ribosomal subunit non-membrane-bounded organelle
F [auth G]	eL8	-	-	-
H [auth I]	uL16	-	-	-
I [auth J]	uL5	-	-	-
K [auth M]	eL14	-	-	-
M [auth O]	uL13	-	-	-
N [auth P]	uL22	-	-	-
O [auth Q]	eL18	-	-	-
R [auth T]	eL21	-	-	-
S [auth U]	eL22	-	-	-
T [auth V]	uL14	-	-	-
V [auth X]	eL23	-	-	-
X [auth Z]	eL27	-	-	-
Y [auth a]	uL15	-	-	-
BA [auth d]	eL31	-	-	-
CA [auth e]	eL32	-	-	-
DA [auth f]	eL33	-	-	-
FA [auth h]	eL35	-	-	-
GA [auth i]	eL36	-	-	-
IA [auth k]	eL38	-	-	-
LA [auth n]	eL41	-	-	-
MA [auth o]	eL42	-	-	-
NA [auth p]	eL43	-	-	-
RA [auth v]	5.8S ribosomal RNA	-	-	-
SA [auth w]	uL3	-	-	-
UA [auth 1]	Protein transport protein Sec61 subunit alpha isoform 1	macromolecule transmembrane transporter activity protein transporter activity protein transmembrane transporter activity transporter activity transmembrane transporter activity signal sequence binding binding peptide binding ribonucleoprotein complex binding protein-containing complex binding ribosome binding	developmental process multicellular organismal process pronephric nephron development animal organ development renal system development multicellular organism development pronephros development anatomical structure development nephron development kidney development system development protein localization membrane organization cellular localization developmental process multicellular organismal process pronephric nephron development animal organ development renal system development multicellular organism development pronephros development anatomical structure development nephron development kidney development system development protein localization membrane organization cellular localization establishment of protein localization establishment of protein localization to membrane localization within membrane protein localization to membrane endoplasmic reticulum organization establishment of localization cellular component organization localization organelle organization protein localization to organelle cellular macromolecule localization macromolecule localization cellular process cellular component organization or biogenesis protein insertion into membrane protein insertion into ER membrane endomembrane system organization protein targeting protein targeting to membrane cotranslational protein targeting to membrane nitrogen compound transport transport protein transmembrane transport establishment of localization in cell post-translational protein targeting to membrane, translocation establishment of protein localization to endoplasmic reticulum protein localization to endoplasmic reticulum intracellular protein transmembrane transport organic substance transport intracellular transport post-translational protein targeting to endoplasmic reticulum membrane transmembrane transport establishment of protein localization to organelle protein transport intracellular protein transport protein targeting to ER SRP-dependent cotranslational protein targeting to membrane SRP-dependent cotranslational protein targeting to membrane, translocation	membrane-bounded organelle protein-containing complex intracellular anatomical structure Sec61 translocon complex membrane protein complex endomembrane system rough endoplasmic reticulum endoplasmic reticulum subcompartment intracellular organelle bounding membrane of organelle nuclear outer membrane-endoplasmic reticulum membrane network endoplasmic reticulum protein-containing complex endoplasmic reticulum membrane organelle subcompartment membrane-bounded organelle protein-containing complex intracellular anatomical structure Sec61 translocon complex membrane protein complex endomembrane system rough endoplasmic reticulum endoplasmic reticulum subcompartment intracellular organelle bounding membrane of organelle nuclear outer membrane-endoplasmic reticulum membrane network endoplasmic reticulum protein-containing complex endoplasmic reticulum membrane organelle subcompartment membrane cellular anatomical entity intracellular membrane-bounded organelle translocon complex rough endoplasmic reticulum membrane organelle endoplasmic reticulum cytoplasm organelle membrane
VA [auth 2]	Protein transport protein Sec61 subunit beta	macromolecule transmembrane transporter activity active transmembrane transporter activity protein transporter activity primary active transmembrane transporter activity ATPase-coupled transmembrane transporter activity protein transmembrane transporter activity protein-transporting ATPase activity transporter activity transmembrane transporter activity ATP-dependent activity ribonucleoprotein complex binding protein-containing complex binding binding ribosome binding	protein localization establishment of protein localization cellular localization nitrogen compound transport transport protein targeting localization protein transmembrane transport cellular macromolecule localization establishment of localization in cell post-translational protein targeting to membrane, translocation establishment of protein localization to endoplasmic reticulum protein localization to endoplasmic reticulum establishment of protein localization to membrane protein localization establishment of protein localization cellular localization nitrogen compound transport transport protein targeting localization protein transmembrane transport cellular macromolecule localization establishment of localization in cell post-translational protein targeting to membrane, translocation establishment of protein localization to endoplasmic reticulum protein localization to endoplasmic reticulum establishment of protein localization to membrane intracellular protein transmembrane transport organic substance transport intracellular transport post-translational protein targeting to endoplasmic reticulum membrane localization within membrane protein localization to membrane establishment of localization protein targeting to membrane transmembrane transport establishment of protein localization to organelle protein transport macromolecule localization protein localization to organelle cellular process intracellular protein transport protein targeting to ER SRP-dependent cotranslational protein targeting to membrane cotranslational protein targeting to membrane SRP-dependent cotranslational protein targeting to membrane, translocation	membrane-bounded organelle protein-containing complex intracellular anatomical structure Sec61 translocon complex membrane protein complex endomembrane system rough endoplasmic reticulum endoplasmic reticulum subcompartment intracellular organelle bounding membrane of organelle nuclear outer membrane-endoplasmic reticulum membrane network endoplasmic reticulum protein-containing complex endoplasmic reticulum membrane organelle subcompartment membrane-bounded organelle protein-containing complex intracellular anatomical structure Sec61 translocon complex membrane protein complex endomembrane system rough endoplasmic reticulum endoplasmic reticulum subcompartment intracellular organelle bounding membrane of organelle nuclear outer membrane-endoplasmic reticulum membrane network endoplasmic reticulum protein-containing complex endoplasmic reticulum membrane organelle subcompartment membrane cellular anatomical entity intracellular membrane-bounded organelle translocon complex rough endoplasmic reticulum membrane organelle endoplasmic reticulum cytoplasm organelle membrane endoplasmic reticulum Sec complex
WA [auth 3]	Protein transport protein Sec61 gamma	-	-	-
YA [auth 5]	PAT complex subunit Asterix	protein folding chaperone	protein localization membrane organization cellular localization establishment of protein localization multi-pass transmembrane protein insertion into ER membrane establishment of protein localization to membrane localization within membrane protein localization to membrane endoplasmic reticulum organization establishment of localization cellular component organization localization organelle organization protein localization to organelle cellular macromolecule localization protein localization membrane organization cellular localization establishment of protein localization multi-pass transmembrane protein insertion into ER membrane establishment of protein localization to membrane localization within membrane protein localization to membrane endoplasmic reticulum organization establishment of localization cellular component organization localization organelle organization protein localization to organelle cellular macromolecule localization macromolecule localization cellular process cellular component organization or biogenesis protein insertion into membrane protein insertion into ER membrane endomembrane system organization	protein-containing complex protein folding chaperone complex intracellular protein-containing complex intracellular anatomical structure multi-pass translocon complex cytoplasm cellular anatomical entity ER membrane insertion complex cytosol membrane-bounded organelle organelle subcompartment membrane intracellular membrane-bounded organelle endomembrane system protein-containing complex protein folding chaperone complex intracellular protein-containing complex intracellular anatomical structure multi-pass translocon complex cytoplasm cellular anatomical entity ER membrane insertion complex cytosol membrane-bounded organelle organelle subcompartment membrane intracellular membrane-bounded organelle endomembrane system endoplasmic reticulum subcompartment intracellular organelle organelle nuclear outer membrane-endoplasmic reticulum membrane network endoplasmic reticulum organelle membrane endoplasmic reticulum membrane
BB [auth 8]	Calcium load-activated calcium channel	-	-	-
CB [auth K]	28S ribosomal RNA	-	-	-
DB [auth 9]	Obligate partner of TMCO1 insertase	-	-	-
J [auth L]	eL13	-	-	-
L [auth N]	eL15	-	-	-
P [auth R]	eL19	RNA binding binding organic cyclic compound binding nucleic acid binding structural molecule activity structural constituent of ribosome	organonitrogen compound metabolic process cellular biosynthetic process cellular metabolic process organonitrogen compound biosynthetic process primary metabolic process translation gene expression macromolecule biosynthetic process organic substance metabolic process biosynthetic process organic substance biosynthetic process metabolic process cellular process protein metabolic process organonitrogen compound metabolic process cellular biosynthetic process cellular metabolic process organonitrogen compound biosynthetic process primary metabolic process translation gene expression macromolecule biosynthetic process organic substance metabolic process biosynthetic process organic substance biosynthetic process metabolic process cellular process protein metabolic process macromolecule metabolic process	protein-containing complex intracellular anatomical structure cellular anatomical entity intracellular organelle ribosomal subunit cytosolic large ribosomal subunit cytosolic ribosome organelle ribonucleoprotein complex intracellular non-membrane-bounded organelle ribosome cytoplasm cytosol large ribosomal subunit protein-containing complex intracellular anatomical structure cellular anatomical entity intracellular organelle ribosomal subunit cytosolic large ribosomal subunit cytosolic ribosome organelle ribonucleoprotein complex intracellular non-membrane-bounded organelle ribosome cytoplasm cytosol large ribosomal subunit non-membrane-bounded organelle
Q [auth S]	eL20	-	-	-
U [auth W]	eL24	-	-	-
W [auth Y]	uL24	-	-	-
Z [auth b]	eL29	-	-	-
AA [auth c]	eL30	-	-	-
EA [auth g]	eL34	-	-	-
HA [auth j]	eL37	-	-	-
JA [auth l]	eL39	structural molecule activity structural constituent of ribosome	organonitrogen compound metabolic process cellular biosynthetic process cellular metabolic process organonitrogen compound biosynthetic process primary metabolic process translation gene expression macromolecule biosynthetic process organic substance metabolic process biosynthetic process organic substance biosynthetic process metabolic process cellular process protein metabolic process organonitrogen compound metabolic process cellular biosynthetic process cellular metabolic process organonitrogen compound biosynthetic process primary metabolic process translation gene expression macromolecule biosynthetic process organic substance metabolic process biosynthetic process organic substance biosynthetic process metabolic process cellular process protein metabolic process macromolecule metabolic process	protein-containing complex ribonucleoprotein complex intracellular organelle intracellular anatomical structure organelle intracellular non-membrane-bounded organelle ribosome cellular anatomical entity non-membrane-bounded organelle
KA [auth m]	eL40	structural molecule activity structural constituent of ribosome	organonitrogen compound metabolic process cellular biosynthetic process cellular metabolic process organonitrogen compound biosynthetic process primary metabolic process translation gene expression macromolecule biosynthetic process organic substance metabolic process biosynthetic process organic substance biosynthetic process metabolic process cellular process protein metabolic process organonitrogen compound metabolic process cellular biosynthetic process cellular metabolic process organonitrogen compound biosynthetic process primary metabolic process translation gene expression macromolecule biosynthetic process organic substance metabolic process biosynthetic process organic substance biosynthetic process metabolic process cellular process protein metabolic process macromolecule metabolic process	protein-containing complex intracellular anatomical structure cellular anatomical entity intracellular organelle ribosomal subunit cytosolic large ribosomal subunit cytosolic ribosome organelle ribonucleoprotein complex intracellular non-membrane-bounded organelle ribosome cytoplasm cytosol large ribosomal subunit protein-containing complex intracellular anatomical structure cellular anatomical entity intracellular organelle ribosomal subunit cytosolic large ribosomal subunit cytosolic ribosome organelle ribonucleoprotein complex intracellular non-membrane-bounded organelle ribosome cytoplasm cytosol large ribosomal subunit non-membrane-bounded organelle cell periphery plasma membrane membrane membrane-bounded organelle nucleus membrane-enclosed lumen intracellular membrane-bounded organelle intracellular organelle lumen nucleoplasm organelle lumen nuclear lumen endoplasmic reticulum endomembrane system
D [auth E]	eL6	-	-	-
OA [auth q]	P-site tRNA	-	-	-
PA [auth r]	eL28	-	-	-
QA [auth u]	5S ribosomal RNA	-	-	-
TA [auth B]	Nascent chain	-	-	-
XA [auth 4]	Coiled-coil domain containing 47	cation binding ion binding binding calcium ion binding metal ion binding small molecule binding protein folding chaperone ribonucleoprotein complex binding protein-containing complex binding ribosome binding	inorganic ion homeostasis intracellular calcium ion homeostasis homeostatic process calcium ion homeostasis endoplasmic reticulum calcium ion homeostasis cellular homeostasis chemical homeostasis intracellular monoatomic cation homeostasis monoatomic ion homeostasis intracellular chemical homeostasis monoatomic cation homeostasis intracellular monoatomic ion homeostasis cellular response to stimulus regulation of biological process inorganic ion homeostasis intracellular calcium ion homeostasis homeostatic process calcium ion homeostasis endoplasmic reticulum calcium ion homeostasis cellular homeostasis chemical homeostasis intracellular monoatomic cation homeostasis monoatomic ion homeostasis intracellular chemical homeostasis monoatomic cation homeostasis intracellular monoatomic ion homeostasis cellular response to stimulus regulation of biological process regulation of cellular process response to stimulus signaling biological regulation response to biotic stimulus cell communication cellular response to biotic stimulus ER overload response cellular response to stress response to stress ER-nucleus signaling pathway cellular process signal transduction response to endoplasmic reticulum stress protein localization membrane organization cellular localization establishment of protein localization multi-pass transmembrane protein insertion into ER membrane establishment of protein localization to membrane localization within membrane protein localization to membrane endoplasmic reticulum organization establishment of localization cellular component organization localization organelle organization protein localization to organelle cellular macromolecule localization macromolecule localization cellular component organization or biogenesis protein insertion into membrane protein insertion into ER membrane endomembrane system organization developmental process multicellular organism development multicellular organismal process anatomical structure development post-embryonic development	protein-containing complex protein folding chaperone complex intracellular protein-containing complex intracellular anatomical structure multi-pass translocon complex cytoplasm cellular anatomical entity ER membrane insertion complex cytosol membrane-bounded organelle organelle subcompartment membrane intracellular membrane-bounded organelle endomembrane system protein-containing complex protein folding chaperone complex intracellular protein-containing complex intracellular anatomical structure multi-pass translocon complex cytoplasm cellular anatomical entity ER membrane insertion complex cytosol membrane-bounded organelle organelle subcompartment membrane intracellular membrane-bounded organelle endomembrane system rough endoplasmic reticulum endoplasmic reticulum subcompartment intracellular organelle bounding membrane of organelle rough endoplasmic reticulum membrane organelle nuclear outer membrane-endoplasmic reticulum membrane network endoplasmic reticulum organelle membrane endoplasmic reticulum membrane
ZA [auth 7]	Nicalin	-	cellular response to stimulus regulation of biological process regulation of signaling regulation of cellular process response to stimulus signaling biological regulation regulation of signal transduction cell communication regulation of response to stimulus regulation of cell communication cellular process signal transduction	membrane cellular anatomical entity membrane-bounded organelle intracellular organelle intracellular anatomical structure organelle endoplasmic reticulum cytoplasm intracellular membrane-bounded organelle endomembrane system
AB [auth 6]	Transmembrane protein 147	ribonucleoprotein complex binding protein-containing complex binding binding ribosome binding	protein localization cellular localization protein localization to nucleus localization within membrane protein localization to membrane protein localization to nuclear envelope localization protein localization to organelle cellular macromolecule localization macromolecule localization cellular process protein localization to nuclear inner membrane membrane organization establishment of protein localization protein localization cellular localization protein localization to nucleus localization within membrane protein localization to membrane protein localization to nuclear envelope localization protein localization to organelle cellular macromolecule localization macromolecule localization cellular process protein localization to nuclear inner membrane membrane organization establishment of protein localization multi-pass transmembrane protein insertion into ER membrane establishment of protein localization to membrane endoplasmic reticulum organization establishment of localization cellular component organization organelle organization cellular component organization or biogenesis protein insertion into membrane protein insertion into ER membrane endomembrane system organization	protein-containing complex intracellular anatomical structure multi-pass translocon complex cytoplasm cellular anatomical entity ER membrane insertion complex cytosol membrane-bounded organelle nuclear membrane membrane nucleus intracellular membrane-bounded organelle endomembrane system intracellular organelle protein-containing complex intracellular anatomical structure multi-pass translocon complex cytoplasm cellular anatomical entity ER membrane insertion complex cytosol membrane-bounded organelle nuclear membrane membrane nucleus intracellular membrane-bounded organelle endomembrane system intracellular organelle organelle envelope organelle nuclear envelope organelle membrane organelle subcompartment endoplasmic reticulum subcompartment nuclear outer membrane-endoplasmic reticulum membrane network endoplasmic reticulum endoplasmic reticulum membrane
G [auth H]	uL6	-	-	-

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
E [auth F]	IPR035808	Large ribosomal subunit protein uL30, eukaryotic/archaeal	Domain
E [auth F]	IPR012988	Large ribosomal subunit protein uL30, N-terminal, eukaryotes	Domain
E [auth F]	IPR036919	Large ribosomal subunit protein uL30, ferredoxin-like fold domain superfamily	Homologous Superfamily
E [auth F]	IPR039699	Large ribosomal subunit protein uL30	Family
E [auth F]	IPR005998	Large ribosomal subunit protein uL30, eukaryotic	Family
E [auth F]	IPR016082	Large ribosomal subunit protein uL30-like, ferredoxin-like fold domain	Domain
UA [auth 1]	IPR002208	SecY/SEC61-alpha family	Family
UA [auth 1]	IPR030659	SecY conserved site	Conserved Site
UA [auth 1]	IPR023201	SecY domain superfamily	Homologous Superfamily
UA [auth 1]	IPR019561	Translocon Sec61/SecY, plug domain	Domain
VA [auth 2]	IPR016482	Protein transport protein SecG/Sec61-beta/Sbh	Family
VA [auth 2]	IPR030671	Protein transport Sec61-beta/Sbh	Family
YA [auth 5]	IPR005351	PAT complex subunit Asterix	Family
P [auth R]	IPR015972	Large ribosomal subunit protein eL19, domain 1	Homologous Superfamily
P [auth R]	IPR039547	Large ribosomal subunit protein eL19	Family
P [auth R]	IPR023638	Large ribosomal subunit protein eL19, conserved site	Conserved Site
P [auth R]	IPR035970	Large ribosomal subunit protein eL19 superfamily	Homologous Superfamily
P [auth R]	IPR000196	Large ribosomal subunit protein eL19 domain	Domain
P [auth R]	IPR033935	Large ribosomal subunit protein eL19, eukaryotic	Domain
JA [auth l]	IPR023626	Large ribosomal subunit protein eL39 domain superfamily	Homologous Superfamily
JA [auth l]	IPR000077	Large ribosomal subunit protein eL39	Family
JA [auth l]	IPR020083	Large ribosomal subunit protein eL39, conserved site	Conserved Site
KA [auth m]	IPR019956	Ubiquitin domain	Domain
KA [auth m]	IPR019954	Ubiquitin conserved site	Conserved Site
KA [auth m]	IPR001975	Large ribosomal subunit protein eL40 domain	Domain
KA [auth m]	IPR038587	Large ribosomal subunit protein eL40 superfamily	Homologous Superfamily
KA [auth m]	IPR029071	Ubiquitin-like domain superfamily	Homologous Superfamily
KA [auth m]	IPR000626	Ubiquitin-like domain	Domain
XA [auth 4]	IPR012879	PAT complex subunit CCDC47	Family
ZA [auth 7]	IPR007484	Peptidase M28	Domain
ZA [auth 7]	IPR016574	Nicalin	Family
AB [auth 6]	IPR019164	Transmembrane protein 147	Family

Membrane Protein Annotation: mpstruc mpstruc Database Homepage

Chains	Resource Link	Group	Subgroup	Protein
AB [auth 6], UA [auth 1], VA [auth 2], XA [auth 4], YA [auth 5] AB [auth 6], UA [auth 1], VA [auth 2], XA [auth 4], YA [auth 5], ZA [auth 7]	mpstruc	TRANSMEMBRANE PROTEINS: ALPHA-HELICAL	Sec, Translocase, and Insertase Proteins	80S ribosome stalled on a 2-TMD Rhodopsin intermediate in complex with the Sec61 translocon