7RK9

Cryo-EM Structure of Adeno-Associated Virus Serotype 1 with Engineered Peptide Domain PHP.B (AAV1-PHP.B)


Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
ASCOP2B SuperfamilyssDNA viruses8071438 3000931 SCOP2B (2022-06-29)
AB [auth BB]SCOP2B SuperfamilyssDNA viruses8071438 3000931 SCOP2B (2022-06-29)
BSCOP2B SuperfamilyssDNA viruses8071438 3000931 SCOP2B (2022-06-29)
BA [auth CA]SCOP2B SuperfamilyssDNA viruses8071438 3000931 SCOP2B (2022-06-29)
CB [auth DB]SCOP2B SuperfamilyssDNA viruses8071438 3000931 SCOP2B (2022-06-29)
DSCOP2B SuperfamilyssDNA viruses8071438 3000931 SCOP2B (2022-06-29)
DA [auth EA]SCOP2B SuperfamilyssDNA viruses8071438 3000931 SCOP2B (2022-06-29)
EB [auth FB]SCOP2B SuperfamilyssDNA viruses8071438 3000931 SCOP2B (2022-06-29)
GA [auth HA]SCOP2B SuperfamilyssDNA viruses8071438 3000931 SCOP2B (2022-06-29)
GB [auth HB]SCOP2B SuperfamilyssDNA viruses8071438 3000931 SCOP2B (2022-06-29)
IA [auth JA]SCOP2B SuperfamilyssDNA viruses8071438 3000931 SCOP2B (2022-06-29)
JSCOP2B SuperfamilyssDNA viruses8071438 3000931 SCOP2B (2022-06-29)
LSCOP2B SuperfamilyssDNA viruses8071438 3000931 SCOP2B (2022-06-29)
MSCOP2B SuperfamilyssDNA viruses8071438 3000931 SCOP2B (2022-06-29)
MA [auth NA]SCOP2B SuperfamilyssDNA viruses8071438 3000931 SCOP2B (2022-06-29)
NA [auth OA]SCOP2B SuperfamilyssDNA viruses8071438 3000931 SCOP2B (2022-06-29)
OSCOP2B SuperfamilyssDNA viruses8071438 3000931 SCOP2B (2022-06-29)
OA [auth PA]SCOP2B SuperfamilyssDNA viruses8071438 3000931 SCOP2B (2022-06-29)
QSCOP2B SuperfamilyssDNA viruses8071438 3000931 SCOP2B (2022-06-29)
RSCOP2B SuperfamilyssDNA viruses8071438 3000931 SCOP2B (2022-06-29)
SSCOP2B SuperfamilyssDNA viruses8071438 3000931 SCOP2B (2022-06-29)
TA [auth UA]SCOP2B SuperfamilyssDNA viruses8071438 3000931 SCOP2B (2022-06-29)
UA [auth VA]SCOP2B SuperfamilyssDNA viruses8071438 3000931 SCOP2B (2022-06-29)
WA [auth XA]SCOP2B SuperfamilyssDNA viruses8071438 3000931 SCOP2B (2022-06-29)
X [auth Y]SCOP2B SuperfamilyssDNA viruses8071438 3000931 SCOP2B (2022-06-29)
XA [auth YA]SCOP2B SuperfamilyssDNA viruses8071438 3000931 SCOP2B (2022-06-29)
AA [auth BA]SCOP2B SuperfamilyssDNA viruses8071438 3000931 SCOP2B (2022-06-29)
BB [auth CB]SCOP2B SuperfamilyssDNA viruses8071438 3000931 SCOP2B (2022-06-29)
CSCOP2B SuperfamilyssDNA viruses8071438 3000931 SCOP2B (2022-06-29)
CA [auth DA]SCOP2B SuperfamilyssDNA viruses8071438 3000931 SCOP2B (2022-06-29)
DB [auth EB]SCOP2B SuperfamilyssDNA viruses8071438 3000931 SCOP2B (2022-06-29)
ESCOP2B SuperfamilyssDNA viruses8071438 3000931 SCOP2B (2022-06-29)
EA [auth FA]SCOP2B SuperfamilyssDNA viruses8071438 3000931 SCOP2B (2022-06-29)
FSCOP2B SuperfamilyssDNA viruses8071438 3000931 SCOP2B (2022-06-29)
FA [auth GA]SCOP2B SuperfamilyssDNA viruses8071438 3000931 SCOP2B (2022-06-29)
FB [auth GB]SCOP2B SuperfamilyssDNA viruses8071438 3000931 SCOP2B (2022-06-29)
GSCOP2B SuperfamilyssDNA viruses8071438 3000931 SCOP2B (2022-06-29)
HSCOP2B SuperfamilyssDNA viruses8071438 3000931 SCOP2B (2022-06-29)
HA [auth IA]SCOP2B SuperfamilyssDNA viruses8071438 3000931 SCOP2B (2022-06-29)
HB [auth IB]SCOP2B SuperfamilyssDNA viruses8071438 3000931 SCOP2B (2022-06-29)
ISCOP2B SuperfamilyssDNA viruses8071438 3000931 SCOP2B (2022-06-29)
JA [auth KA]SCOP2B SuperfamilyssDNA viruses8071438 3000931 SCOP2B (2022-06-29)
KSCOP2B SuperfamilyssDNA viruses8071438 3000931 SCOP2B (2022-06-29)
KA [auth LA]SCOP2B SuperfamilyssDNA viruses8071438 3000931 SCOP2B (2022-06-29)
LA [auth MA]SCOP2B SuperfamilyssDNA viruses8071438 3000931 SCOP2B (2022-06-29)
NSCOP2B SuperfamilyssDNA viruses8071438 3000931 SCOP2B (2022-06-29)
PSCOP2B SuperfamilyssDNA viruses8071438 3000931 SCOP2B (2022-06-29)
PA [auth QA]SCOP2B SuperfamilyssDNA viruses8071438 3000931 SCOP2B (2022-06-29)
QA [auth RA]SCOP2B SuperfamilyssDNA viruses8071438 3000931 SCOP2B (2022-06-29)
RA [auth SA]SCOP2B SuperfamilyssDNA viruses8071438 3000931 SCOP2B (2022-06-29)
SA [auth TA]SCOP2B SuperfamilyssDNA viruses8071438 3000931 SCOP2B (2022-06-29)
TSCOP2B SuperfamilyssDNA viruses8071438 3000931 SCOP2B (2022-06-29)
U [auth V]SCOP2B SuperfamilyssDNA viruses8071438 3000931 SCOP2B (2022-06-29)
V [auth W]SCOP2B SuperfamilyssDNA viruses8071438 3000931 SCOP2B (2022-06-29)
VA [auth WA]SCOP2B SuperfamilyssDNA viruses8071438 3000931 SCOP2B (2022-06-29)
W [auth X]SCOP2B SuperfamilyssDNA viruses8071438 3000931 SCOP2B (2022-06-29)
Y [auth Z]SCOP2B SuperfamilyssDNA viruses8071438 3000931 SCOP2B (2022-06-29)
YA [auth ZA]SCOP2B SuperfamilyssDNA viruses8071438 3000931 SCOP2B (2022-06-29)
Z [auth AA]SCOP2B SuperfamilyssDNA viruses8071438 3000931 SCOP2B (2022-06-29)
ZA [auth AB]SCOP2B SuperfamilyssDNA viruses8071438 3000931 SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
APF00740e7rk9A1 A: beta sandwichesX: jelly-rollH: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology)T: Nucleoplasmin-like/VP (viral coat and capsid proteins)F: PF00740ECOD (1.6)
AB [auth BB]PF00740e7rk9BB1 A: beta sandwichesX: jelly-rollH: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology)T: Nucleoplasmin-like/VP (viral coat and capsid proteins)F: PF00740ECOD (1.6)
BPF00740e7rk9B1 A: beta sandwichesX: jelly-rollH: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology)T: Nucleoplasmin-like/VP (viral coat and capsid proteins)F: PF00740ECOD (1.6)
BA [auth CA]PF00740e7rk9CA1 A: beta sandwichesX: jelly-rollH: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology)T: Nucleoplasmin-like/VP (viral coat and capsid proteins)F: PF00740ECOD (1.6)
CB [auth DB]PF00740e7rk9DB1 A: beta sandwichesX: jelly-rollH: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology)T: Nucleoplasmin-like/VP (viral coat and capsid proteins)F: PF00740ECOD (1.6)
DPF00740e7rk9D1 A: beta sandwichesX: jelly-rollH: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology)T: Nucleoplasmin-like/VP (viral coat and capsid proteins)F: PF00740ECOD (1.6)
DA [auth EA]PF00740e7rk9EA1 A: beta sandwichesX: jelly-rollH: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology)T: Nucleoplasmin-like/VP (viral coat and capsid proteins)F: PF00740ECOD (1.6)
EB [auth FB]PF00740e7rk9FB1 A: beta sandwichesX: jelly-rollH: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology)T: Nucleoplasmin-like/VP (viral coat and capsid proteins)F: PF00740ECOD (1.6)
GA [auth HA]PF00740e7rk9HA1 A: beta sandwichesX: jelly-rollH: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology)T: Nucleoplasmin-like/VP (viral coat and capsid proteins)F: PF00740ECOD (1.6)
GB [auth HB]PF00740e7rk9HB1 A: beta sandwichesX: jelly-rollH: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology)T: Nucleoplasmin-like/VP (viral coat and capsid proteins)F: PF00740ECOD (1.6)
IA [auth JA]PF00740e7rk9JA1 A: beta sandwichesX: jelly-rollH: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology)T: Nucleoplasmin-like/VP (viral coat and capsid proteins)F: PF00740ECOD (1.6)
JPF00740e7rk9J1 A: beta sandwichesX: jelly-rollH: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology)T: Nucleoplasmin-like/VP (viral coat and capsid proteins)F: PF00740ECOD (1.6)
LPF00740e7rk9L1 A: beta sandwichesX: jelly-rollH: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology)T: Nucleoplasmin-like/VP (viral coat and capsid proteins)F: PF00740ECOD (1.6)
MPF00740e7rk9M1 A: beta sandwichesX: jelly-rollH: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology)T: Nucleoplasmin-like/VP (viral coat and capsid proteins)F: PF00740ECOD (1.6)
MA [auth NA]PF00740e7rk9NA1 A: beta sandwichesX: jelly-rollH: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology)T: Nucleoplasmin-like/VP (viral coat and capsid proteins)F: PF00740ECOD (1.6)
NA [auth OA]PF00740e7rk9OA1 A: beta sandwichesX: jelly-rollH: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology)T: Nucleoplasmin-like/VP (viral coat and capsid proteins)F: PF00740ECOD (1.6)
OPF00740e7rk9O1 A: beta sandwichesX: jelly-rollH: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology)T: Nucleoplasmin-like/VP (viral coat and capsid proteins)F: PF00740ECOD (1.6)
OA [auth PA]PF00740e7rk9PA1 A: beta sandwichesX: jelly-rollH: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology)T: Nucleoplasmin-like/VP (viral coat and capsid proteins)F: PF00740ECOD (1.6)
QPF00740e7rk9Q1 A: beta sandwichesX: jelly-rollH: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology)T: Nucleoplasmin-like/VP (viral coat and capsid proteins)F: PF00740ECOD (1.6)
RPF00740e7rk9R1 A: beta sandwichesX: jelly-rollH: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology)T: Nucleoplasmin-like/VP (viral coat and capsid proteins)F: PF00740ECOD (1.6)
SPF00740e7rk9S1 A: beta sandwichesX: jelly-rollH: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology)T: Nucleoplasmin-like/VP (viral coat and capsid proteins)F: PF00740ECOD (1.6)
TA [auth UA]PF00740e7rk9UA1 A: beta sandwichesX: jelly-rollH: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology)T: Nucleoplasmin-like/VP (viral coat and capsid proteins)F: PF00740ECOD (1.6)
UA [auth VA]PF00740e7rk9VA1 A: beta sandwichesX: jelly-rollH: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology)T: Nucleoplasmin-like/VP (viral coat and capsid proteins)F: PF00740ECOD (1.6)
WA [auth XA]PF00740e7rk9XA1 A: beta sandwichesX: jelly-rollH: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology)T: Nucleoplasmin-like/VP (viral coat and capsid proteins)F: PF00740ECOD (1.6)
X [auth Y]PF00740e7rk9Y1 A: beta sandwichesX: jelly-rollH: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology)T: Nucleoplasmin-like/VP (viral coat and capsid proteins)F: PF00740ECOD (1.6)
XA [auth YA]PF00740e7rk9YA1 A: beta sandwichesX: jelly-rollH: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology)T: Nucleoplasmin-like/VP (viral coat and capsid proteins)F: PF00740ECOD (1.6)
AA [auth BA]PF00740e7rk9BA1 A: beta sandwichesX: jelly-rollH: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology)T: Nucleoplasmin-like/VP (viral coat and capsid proteins)F: PF00740ECOD (1.6)
BB [auth CB]PF00740e7rk9CB1 A: beta sandwichesX: jelly-rollH: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology)T: Nucleoplasmin-like/VP (viral coat and capsid proteins)F: PF00740ECOD (1.6)
CPF00740e7rk9C1 A: beta sandwichesX: jelly-rollH: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology)T: Nucleoplasmin-like/VP (viral coat and capsid proteins)F: PF00740ECOD (1.6)
CA [auth DA]PF00740e7rk9DA1 A: beta sandwichesX: jelly-rollH: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology)T: Nucleoplasmin-like/VP (viral coat and capsid proteins)F: PF00740ECOD (1.6)
DB [auth EB]PF00740e7rk9EB1 A: beta sandwichesX: jelly-rollH: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology)T: Nucleoplasmin-like/VP (viral coat and capsid proteins)F: PF00740ECOD (1.6)
EPF00740e7rk9E1 A: beta sandwichesX: jelly-rollH: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology)T: Nucleoplasmin-like/VP (viral coat and capsid proteins)F: PF00740ECOD (1.6)
EA [auth FA]PF00740e7rk9FA1 A: beta sandwichesX: jelly-rollH: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology)T: Nucleoplasmin-like/VP (viral coat and capsid proteins)F: PF00740ECOD (1.6)
FPF00740e7rk9F1 A: beta sandwichesX: jelly-rollH: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology)T: Nucleoplasmin-like/VP (viral coat and capsid proteins)F: PF00740ECOD (1.6)
FA [auth GA]PF00740e7rk9GA1 A: beta sandwichesX: jelly-rollH: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology)T: Nucleoplasmin-like/VP (viral coat and capsid proteins)F: PF00740ECOD (1.6)
FB [auth GB]PF00740e7rk9GB1 A: beta sandwichesX: jelly-rollH: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology)T: Nucleoplasmin-like/VP (viral coat and capsid proteins)F: PF00740ECOD (1.6)
GPF00740e7rk9G1 A: beta sandwichesX: jelly-rollH: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology)T: Nucleoplasmin-like/VP (viral coat and capsid proteins)F: PF00740ECOD (1.6)
HPF00740e7rk9H1 A: beta sandwichesX: jelly-rollH: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology)T: Nucleoplasmin-like/VP (viral coat and capsid proteins)F: PF00740ECOD (1.6)
HA [auth IA]PF00740e7rk9IA1 A: beta sandwichesX: jelly-rollH: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology)T: Nucleoplasmin-like/VP (viral coat and capsid proteins)F: PF00740ECOD (1.6)
HB [auth IB]PF00740e7rk9IB1 A: beta sandwichesX: jelly-rollH: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology)T: Nucleoplasmin-like/VP (viral coat and capsid proteins)F: PF00740ECOD (1.6)
IPF00740e7rk9I1 A: beta sandwichesX: jelly-rollH: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology)T: Nucleoplasmin-like/VP (viral coat and capsid proteins)F: PF00740ECOD (1.6)
JA [auth KA]PF00740e7rk9KA1 A: beta sandwichesX: jelly-rollH: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology)T: Nucleoplasmin-like/VP (viral coat and capsid proteins)F: PF00740ECOD (1.6)
KPF00740e7rk9K1 A: beta sandwichesX: jelly-rollH: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology)T: Nucleoplasmin-like/VP (viral coat and capsid proteins)F: PF00740ECOD (1.6)
KA [auth LA]PF00740e7rk9LA1 A: beta sandwichesX: jelly-rollH: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology)T: Nucleoplasmin-like/VP (viral coat and capsid proteins)F: PF00740ECOD (1.6)
LA [auth MA]PF00740e7rk9MA1 A: beta sandwichesX: jelly-rollH: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology)T: Nucleoplasmin-like/VP (viral coat and capsid proteins)F: PF00740ECOD (1.6)
NPF00740e7rk9N1 A: beta sandwichesX: jelly-rollH: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology)T: Nucleoplasmin-like/VP (viral coat and capsid proteins)F: PF00740ECOD (1.6)
PPF00740e7rk9P1 A: beta sandwichesX: jelly-rollH: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology)T: Nucleoplasmin-like/VP (viral coat and capsid proteins)F: PF00740ECOD (1.6)
PA [auth QA]PF00740e7rk9QA1 A: beta sandwichesX: jelly-rollH: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology)T: Nucleoplasmin-like/VP (viral coat and capsid proteins)F: PF00740ECOD (1.6)
QA [auth RA]PF00740e7rk9RA1 A: beta sandwichesX: jelly-rollH: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology)T: Nucleoplasmin-like/VP (viral coat and capsid proteins)F: PF00740ECOD (1.6)
RA [auth SA]PF00740e7rk9SA1 A: beta sandwichesX: jelly-rollH: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology)T: Nucleoplasmin-like/VP (viral coat and capsid proteins)F: PF00740ECOD (1.6)
SA [auth TA]PF00740e7rk9TA1 A: beta sandwichesX: jelly-rollH: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology)T: Nucleoplasmin-like/VP (viral coat and capsid proteins)F: PF00740ECOD (1.6)
TPF00740e7rk9T1 A: beta sandwichesX: jelly-rollH: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology)T: Nucleoplasmin-like/VP (viral coat and capsid proteins)F: PF00740ECOD (1.6)
U [auth V]PF00740e7rk9V1 A: beta sandwichesX: jelly-rollH: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology)T: Nucleoplasmin-like/VP (viral coat and capsid proteins)F: PF00740ECOD (1.6)
V [auth W]PF00740e7rk9W1 A: beta sandwichesX: jelly-rollH: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology)T: Nucleoplasmin-like/VP (viral coat and capsid proteins)F: PF00740ECOD (1.6)
VA [auth WA]PF00740e7rk9WA1 A: beta sandwichesX: jelly-rollH: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology)T: Nucleoplasmin-like/VP (viral coat and capsid proteins)F: PF00740ECOD (1.6)
W [auth X]PF00740e7rk9X1 A: beta sandwichesX: jelly-rollH: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology)T: Nucleoplasmin-like/VP (viral coat and capsid proteins)F: PF00740ECOD (1.6)
Y [auth Z]PF00740e7rk9Z1 A: beta sandwichesX: jelly-rollH: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology)T: Nucleoplasmin-like/VP (viral coat and capsid proteins)F: PF00740ECOD (1.6)
YA [auth ZA]PF00740e7rk9ZA1 A: beta sandwichesX: jelly-rollH: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology)T: Nucleoplasmin-like/VP (viral coat and capsid proteins)F: PF00740ECOD (1.6)
Z [auth AA]PF00740e7rk9AA1 A: beta sandwichesX: jelly-rollH: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology)T: Nucleoplasmin-like/VP (viral coat and capsid proteins)F: PF00740ECOD (1.6)
ZA [auth AB]PF00740e7rk9AB1 A: beta sandwichesX: jelly-rollH: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology)T: Nucleoplasmin-like/VP (viral coat and capsid proteins)F: PF00740ECOD (1.6)

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
IPR013607Phospholipase A2-like domainDomain
IPR016184Capsid/spike protein, ssDNA virusHomologous Superfamily
IPR036952Parvovirus coat protein VP1/VP2Homologous Superfamily
IPR001403Parvovirus coat protein VP2Domain