7QIY

Specific features and methylation sites of a plant ribosome. 40S head ribosomal subunit.


Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
C [auth E]SCOP2 FamilyRibosomal protein S78107753 4001112 SCOP2 (2022-06-29)
C [auth E]SCOP2 SuperfamilyRibosomal protein S78107754 3000799 SCOP2 (2022-06-29)
D [auth F]SCOP2 FamilyeS10-like8107755 4007434 SCOP2 (2022-06-29)
D [auth F]SCOP2 SuperfamilyWinged helix DNA-binding domain8107756 3000034 SCOP2 (2022-06-29)
F [auth H]SCOP2 FamilyTranslational machinery components8107743 4000951 SCOP2 (2022-06-29)
F [auth H]SCOP2 SuperfamilyRibosomal protein S5 domain 2-like8107744 3000100 SCOP2 (2022-06-29)
H [auth J]SCOP2 FamilyRibosomal protein S138107739 4000260 SCOP2 (2022-06-29)
H [auth J]SCOP2 SuperfamilyS13-like H2TH domain8107740 3000053 SCOP2 (2022-06-29)
I [auth K]SCOP2 FamilyRps19E-like8107741 4000222 SCOP2 (2022-06-29)
I [auth K]SCOP2 SuperfamilyWinged helix DNA-binding domain8107742 3000034 SCOP2 (2022-06-29)
J [auth L]SCOP2 FamilyRibosomal protein S108107735 4001240 SCOP2 (2022-06-29)
J [auth L]SCOP2 SuperfamilyRibosomal protein S108107736 3001336 SCOP2 (2022-06-29)
K [auth M]SCOP2 FamilyCold shock DNA-binding domain-like8107783 4001909 SCOP2 (2022-06-29)
K [auth M]SCOP2 SuperfamilyNucleic acid-binding proteins8107784 3000135 SCOP2 (2022-06-29)
L [auth N]SCOP2 FamilyRibosomal protein S14p/S29e8107725 4003647 SCOP2 (2022-06-29)
L [auth N]SCOP2 SuperfamilyGlucocorticoid receptor-like (DNA-binding domain)8107726 3000068 SCOP2 (2022-06-29)
N [auth P]SCOP2 FamilyRibosomal protein S25-like8107737 4007308 SCOP2 (2022-06-29)
N [auth P]SCOP2 SuperfamilyWinged helix DNA-binding domain8107738 3000034 SCOP2 (2022-06-29)
M [auth O]SCOP2 FamilyWD40-repeat8107747 4002744 SCOP2 (2022-06-29)
M [auth O]SCOP2 SuperfamilyWD40 repeat-like8107748 3001694 SCOP2 (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
B [auth D]PF00189e7qiyD1 A: a+b two layersX: T-foldH: Ribosomal protein S3-C (From Topology)T: Ribosomal protein S3-CF: PF00189ECOD (1.6)
B [auth D]PF07650e7qiyD2 A: a+b two layersX: Alpha-lytic protease prodomain-likeH: KH-domainsT: Prokaryotic type KH domain (KH-domain type II)F: PF07650ECOD (1.6)
C [auth E]PF00177e7qiyE1 A: alpha arraysX: Ribosomal protein S7 (From Topology)H: Ribosomal protein S7 (From Topology)T: Ribosomal protein S7F: PF00177ECOD (1.6)
D [auth F]PF03501e7qiyF1 A: alpha arraysX: HTHH: HTHT: wingedF: PF03501ECOD (1.6)
E [auth G]PF00203e7qiyG1 A: a+b two layersX: Ribosomal protein S19 (From Topology)H: Ribosomal protein S19 (From Topology)T: Ribosomal protein S19F: PF00203ECOD (1.6)
F [auth H]PF00380e7qiyH1 A: a+b two layersX: Ribosomal protein S5 domain 2-like (From Topology)H: Ribosomal protein S5 domain 2-like (From Topology)T: Ribosomal protein S5 domain 2-likeF: PF00380ECOD (1.6)
G [auth I]PF00833e7qiyI1 A: alpha arraysX: HTHH: HTHT: FF domainF: PF00833ECOD (1.6)
H [auth J]PF00416e7qiyJ1 A: alpha arraysX: HhH/H2THH: H2TH (From Topology)T: H2THF: PF00416ECOD (1.6)
I [auth K]PF01090e7qiyK1 A: alpha arraysX: HTHH: HTHT: wingedF: PF01090ECOD (1.6)
J [auth L]PF00338e7qiyL1 A: a+b two layersX: Alpha-beta plaitsH: Ribosomal protein S10 (From Topology)T: Ribosomal protein S10F: PF00338ECOD (1.6)
K [auth M]PF01200e7qiyM1 A: beta barrelsX: OB-foldH: Nucleic acid-binding proteins (From Topology)T: Nucleic acid-binding proteinsF: PF01200ECOD (1.6)
L [auth N]PF00253e7qiyN1 A: few secondary structure elementsX: Glucocorticoid receptor-likeH: LIM domain-likeT: LIM domain-likeF: PF00253ECOD (1.6)
N [auth P]PF03297e7qiyP1 A: alpha arraysX: HTHH: HTHT: wingedF: PF03297ECOD (1.6)
M [auth O]PF00400e7qiyO1 A: beta duplicates or obligate multimersX: beta-propeller-likeH: beta-propellerT: 7-bladedF: PF00400ECOD (1.6)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
B [auth D]PF07650KH domain (KH_2)KH domain- Domain
B [auth D]PF00189Ribosomal protein S3, C-terminal domain (Ribosomal_S3_C)Ribosomal protein S3, C-terminal domainThis family contains a central domain Pfam:PF00013, hence the amino and carboxyl terminal domains are stored separately. This is a minimal carboxyl-terminal domain. Some are much longer.Domain
C [auth E]PF00177Ribosomal protein S7p/S5e (Ribosomal_S7)Ribosomal protein S7p/S5eThis family contains ribosomal protein S7 from prokaryotes and S5 from eukaryotes.Domain
D [auth F]PF03501Plectin/S10 domain (S10_plectin)Plectin/S10 domainThis presumed domain is found at the N-terminus of some isoforms of the cytoskeletal muscle protein plectin as well as the ribosomal S10 protein. This domain may be involved in RNA binding.Domain
E [auth G]PF00203Ribosomal protein S19 (Ribosomal_S19)Ribosomal protein S19- Domain
F [auth H]PF00380Ribosomal protein S9/S16 (Ribosomal_S9)Ribosomal protein S9/S16- Family
G [auth I]PF00833Ribosomal S17 (Ribosomal_S17e)Ribosomal S17- Family
H [auth J]PF00416Ribosomal protein S13/S18 (Ribosomal_S13)Ribosomal protein S13/S18- Family
I [auth K]PF01090Ribosomal protein S19e (Ribosomal_S19e)Ribosomal protein S19e- Family
J [auth L]PF00338Ribosomal protein S10p/S20e (Ribosomal_S10)Ribosomal protein S10p/S20eThis family includes small ribosomal subunit S10 from prokaryotes and S20 from eukaryotes.Domain
K [auth M]PF01200Ribosomal protein S28e (Ribosomal_S28e)Ribosomal protein S28e- Family
L [auth N]PF00253Ribosomal protein S14p/S29e (Ribosomal_S14)Ribosomal protein S14p/S29e- Family
N [auth P]PF03297S25 ribosomal protein (Ribosomal_S25)S25 ribosomal protein- Family
M [auth O]PF00400WD domain, G-beta repeat (WD40)WD domain, G-beta repeat- Repeat

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
A [auth 2]18S rRNA head---
B [auth D]KH type-2 domain-containing protein
C [auth E]Ribosomal_S7 domain-containing protein
D [auth F]S10_plectin domain-containing protein -
E [auth G]40S head ribosomal protein uS19
F [auth H]40S head ribosomal protein uS9
G [auth I]40S ribosomal protein S17
H [auth J]40S head ribosomal protein uS13
I [auth K]40S head ribosomal protein eS19
J [auth L]Ribosomal_S10 domain-containing protein
K [auth M]40S head ribosomal protein eS28
L [auth N]40S ribosomal protein S29
N [auth P]40S ribosomal protein S25 -
O [auth Q]tRNA---
P [auth R]mRNA---
M [auth O]Mitogen-activated protein kinase

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
B [auth D]IPR004044K Homology domain, type 2Domain
B [auth D]IPR015946K homology domain-like, alpha/betaHomologous Superfamily
B [auth D]IPR036419Ribosomal protein S3, C-terminal domain superfamilyHomologous Superfamily
B [auth D]IPR001351Small ribosomal subunit protein uS3, C-terminalDomain
B [auth D]IPR005703Small ribosomal subunit protein uS3, eukaryotic/archaealFamily
B [auth D]IPR009019K homology domain superfamily, prokaryotic typeHomologous Superfamily
B [auth D]IPR018280Small ribosomal subunit protein uS3, conserved siteConserved Site
C [auth E]IPR020606Small ribosomal subunit protein uS7, conserved siteConserved Site
C [auth E]IPR000235Small ribosomal subunit protein uS7Family
C [auth E]IPR036823Small ribosomal subunit protein uS7 domain superfamilyHomologous Superfamily
C [auth E]IPR023798Small ribosomal subunit protein uS7 domainDomain
C [auth E]IPR005716Ribosomal protein uS7, eukaryotic/archaealFamily
D [auth F]IPR037447Small ribosomal subunit protein eS10Family
D [auth F]IPR036388Winged helix-like DNA-binding domain superfamilyHomologous Superfamily
D [auth F]IPR005326Plectin/eS10, N-terminalDomain
E [auth G]IPR002222Small ribosomal subunit protein uS19Family
E [auth G]IPR023575Small ribosomal subunit protein uS19, superfamilyHomologous Superfamily
E [auth G]IPR020934Small ribosomal subunit protein uS19, conserved siteConserved Site
E [auth G]IPR005713Small ribosomal subunit protein uS19, eukaryotic/archaealFamily
F [auth H]IPR020574Small ribosomal subunit protein uS9, conserved siteConserved Site
F [auth H]IPR020568Ribosomal protein uS5 domain 2-type superfamilyHomologous Superfamily
F [auth H]IPR000754Small ribosomal subunit protein uS9Family
F [auth H]IPR014721Small ribosomal subunit protein uS5 domain 2-type fold, subgroupHomologous Superfamily
G [auth I]IPR036401Small ribosomal subunit protein eS17 superfamilyHomologous Superfamily
G [auth I]IPR001210Small ribosomal subunit protein eS17Family
G [auth I]IPR018273Small ribosomal subunit protein eS17, conserved siteConserved Site
H [auth J]IPR027437Small ribosomal subunit protein uS13, C-terminalHomologous Superfamily
H [auth J]IPR001892Small ribosomal subunit protein uS13Family
H [auth J]IPR018269Small ribosomal subunit protein uS13, conserved siteConserved Site
H [auth J]IPR010979Small ribosomal subunit protein uS13-like, H2THHomologous Superfamily
I [auth K]IPR001266Small ribosomal subunit protein eS19Family
I [auth K]IPR036388Winged helix-like DNA-binding domain superfamilyHomologous Superfamily
I [auth K]IPR018277Small ribosomal subunit protein eS19, conserved siteConserved Site
I [auth K]IPR036390Winged helix DNA-binding domain superfamilyHomologous Superfamily
J [auth L]IPR001848Small ribosomal subunit protein uS10Family
J [auth L]IPR027486Small ribosomal subunit protein uS10 domainDomain
J [auth L]IPR036838Small ribosomal subunit protein uS10 domain superfamilyHomologous Superfamily
J [auth L]IPR005729Small ribosomal subunit protein uS10, eukaryotic/archaealFamily
J [auth L]IPR018268Small ribosomal subunit protein uS10, conserved siteConserved Site
K [auth M]IPR028626Ribosomal protein eS28 conserved siteConserved Site
K [auth M]IPR012340Nucleic acid-binding, OB-foldHomologous Superfamily
K [auth M]IPR000289Small ribosomal subunit protein eS28Family
L [auth N]IPR001209Small ribosomal subunit protein uS14Family
L [auth N]IPR039744Small ribosomal subunit protein uS14, eukaryotes/archaeaFamily
L [auth N]IPR043140Small ribosomal subunit protein uS14 superfamilyHomologous Superfamily
N [auth P]IPR004977Small ribosomal subunit protein eS25Family
M [auth O]IPR003527Mitogen-activated protein (MAP) kinase, conserved siteConserved Site
M [auth O]IPR017441Protein kinase, ATP binding siteBinding Site
M [auth O]IPR019775WD40 repeat, conserved siteConserved Site
M [auth O]IPR036322WD40-repeat-containing domain superfamilyHomologous Superfamily
M [auth O]IPR043891SPARK domainDomain
M [auth O]IPR011009Protein kinase-like domain superfamilyHomologous Superfamily
M [auth O]IPR045223Small ribosomal subunit protein RACK1-likeFamily
M [auth O]IPR001680WD40 repeatRepeat
M [auth O]IPR000719Protein kinase domainDomain
M [auth O]IPR020472G-protein beta WD-40 repeatRepeat
M [auth O]IPR015943WD40/YVTN repeat-like-containing domain superfamilyHomologous Superfamily