7PZY

Structure of the vacant Candida albicans 80S ribosome


Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
M [auth r]SCOP2B SuperfamilyRibosomal protein L16p/L10e8107680 3000884 SCOP2B (2022-06-29)
N [auth s]SCOP2B SuperfamilyRL5-like8107490 3001709 SCOP2B (2022-06-29)
Q [auth v]SCOP2B SuperfamilyRibosomal proteins S24e L23 and L15e8107672 3000210 SCOP2B (2022-06-29)
U [auth z]SCOP2B SuperfamilyRibosomal protein L19 (L19e)8107494 3000890 SCOP2B (2022-06-29)
X [auth 5]SCOP2B Superfamily60S Ribosomal protein L22e8107500 3002158 SCOP2B (2022-06-29)
Y [auth 6]SCOP2B Superfamily50S Ribosomal protein L14-like8107510 3000433 SCOP2B (2022-06-29)
BA [auth 9]SCOP2B SuperfamilyTranslation proteins SH3-like KOW motif containing domain8107474 3000334 SCOP2B (2022-06-29)
DA [auth AB]SCOP2B SuperfamilyRibosomal proteins L15p and L18e8107516 3001045 SCOP2B (2022-06-29)
EA [auth AC]SCOP2B SuperfamilyRibosomal protein L29e8107484 3002157 SCOP2B (2022-06-29)
FA [auth AD]SCOP2B SuperfamilyL30e-like8107502 3001739 SCOP2B (2022-06-29)
HA [auth AF]SCOP2B SuperfamilyRibosomal protein L32e8107508 3000982 SCOP2B (2022-06-29)
IA [auth AG]SCOP2B SuperfamilyTranslational proteins8107488 3000811 SCOP2B (2022-06-29)
JA [auth AH]SCOP2B SuperfamilyRibosomal protein L34e-like8107482 3002203 SCOP2B (2022-06-29)
NA [auth AL]SCOP2B SuperfamilyRibosomal L38e protein-like8107486 3002206 SCOP2B (2022-06-29)
OA [auth AM]SCOP2B SuperfamilyRibosomal protein L39e8107480 3001756 SCOP2B (2022-06-29)
PA [auth AN]SCOP2B SuperfamilyZn-binding ribosomal proteins8107498 3001320 SCOP2B (2022-06-29)
SA [auth AQ]SCOP2B SuperfamilyZn-binding ribosomal proteins8107506 3001320 SCOP2B (2022-06-29)
VA [auth B]SCOP2 FamilyRibosomal protein S2-like8107579 4003744 SCOP2 (2022-06-29)
VA [auth B]SCOP2 SuperfamilySIS domain/Ribosomal protein S2-like8107580 3001397 SCOP2 (2022-06-29)
WA [auth C]SCOP2B SuperfamilyRibosomal S3Ae-like8107594 3002166 SCOP2B (2022-06-29)
AB [auth G]SCOP2B SuperfamilyRibosomal protein S78107676 3000799 SCOP2B (2022-06-29)
FB [auth L]SCOP2B SuperfamilyWinged helix DNA-binding domain8107492 3000034 SCOP2B (2022-06-29)
F [auth k]SCOP2B SuperfamilyTranslational proteins8107668 3000811 SCOP2B (2022-06-29)
HB [auth N]SCOP2B SuperfamilyL30e-like8107674 3001739 SCOP2B (2022-06-29)
JB [auth P]SCOP2B SuperfamilyTranslational machinery components8107478 3000571 SCOP2B (2022-06-29)
LB [auth R]SCOP2B SuperfamilyRibosomal protein S5 domain 2-like8107476 3000100 SCOP2B (2022-06-29)
NB [auth T]SCOP2B SuperfamilyS13-like H2TH domain8107514 3000053 SCOP2B (2022-06-29)
OB [auth U]SCOP2B SuperfamilyWinged helix DNA-binding domain8107496 3000034 SCOP2B (2022-06-29)
PB [auth V]SCOP2B SuperfamilyRibosomal protein S108107670 3001336 SCOP2B (2022-06-29)
QB [auth W]SCOP2B SuperfamilyGlucocorticoid receptor-like (DNA-binding domain)8107472 3000068 SCOP2B (2022-06-29)
RB [auth X]SCOP2 FamilyRibosomal protein S88107695 4002027 SCOP2 (2022-06-29)
RB [auth X]SCOP2 SuperfamilyRibosomal protein S88107696 3000709 SCOP2 (2022-06-29)
UB [auth a]SCOP2B SuperfamilyWinged helix DNA-binding domain8107504 3000034 SCOP2B (2022-06-29)
VB [auth b]SCOP2B SuperfamilyGlucocorticoid receptor-like (DNA-binding domain)8107682 3000068 SCOP2B (2022-06-29)
XB [auth d]SCOP2B SuperfamilyNucleic acid-binding proteins8107512 3000135 SCOP2B (2022-06-29)
YB [auth e]SCOP2B SuperfamilyGlucocorticoid receptor-like (DNA-binding domain)8107520 3000068 SCOP2B (2022-06-29)
ZB [auth f]SCOP2B SuperfamilyRibosomal protein S30e-like8107518 3002190 SCOP2B (2022-06-29)
H [auth m]SCOP2 FamilyRibosomal protein L5e and archael L18-like8107677 4006591 SCOP2 (2022-06-29)
H [auth m]SCOP2 SuperfamilyTranslational machinery components8107678 3000571 SCOP2 (2022-06-29)
BC [auth h]SCOP2B SuperfamilyWD40 repeat-like8107636 3001694 SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
J [auth o]PF00327,PF08079e7pzyo1 A: a+b two layersX: Ribosomal protein L30p/L7e (From Topology)H: Ribosomal protein L30p/L7e (From Topology)T: Ribosomal protein L30p/L7eF: PF00327,PF08079ECOD (1.6)
K [auth p]PF01248e7pzyp1 A: a+b three layersX: Bacillus chorismate mutase-likeH: L30e-like (From Topology)T: L30e-likeF: PF01248ECOD (1.6)
L [auth q]PF00347e7pzyq2 A: a+b two layersX: Ribosomal protein L6 (From Topology)H: Ribosomal protein L6 (From Topology)T: Ribosomal protein L6F: PF00347ECOD (1.6)
M [auth r]PF00252e7pzyr1 A: a+b complex topologyX: alpha/beta-Hammerhead/Barrel-sandwich hybridH: alpha/beta-Hammerhead/Barrel-sandwich hybridT: Ribosomal protein L10eF: PF00252ECOD (1.6)
N [auth s]PF00281,PF00673e7pzys1 A: a+b two layersX: Ribosomal protein L5 (From Topology)H: Ribosomal protein L5 (From Topology)T: Ribosomal protein L5F: PF00281,PF00673ECOD (1.6)
O [auth t]PF01294e7pzyt1 A: extended segmentsX: RPL13 (From Topology)H: RPL13 (From Topology)T: RPL13F: PF01294ECOD (1.6)
P [auth u]PF01929e7pzyu1 A: beta barrelsX: SH3H: SH3T: SH3F: PF01929ECOD (1.6)
Q [auth v]PF00827e7pzyv1 A: a+b two layersX: Alpha-beta plaitsH: Ribosomal proteins S24e, L23 and L15e (From Topology)T: Ribosomal proteins S24e, L23 and L15eF: PF00827ECOD (1.6)
R [auth w]PF00572e7pzyw1 A: a/b three-layered sandwichesX: Ribosomal protein L13/L15p/L18e/L32eH: Ribosomal protein L13 and L16-A (From Topology)T: Ribosomal protein L13 and L16-AF: PF00572ECOD (1.6)
S [auth x]PF00237e7pzyx1 A: a+b two layersX: Enolase-N/ribosomal proteinH: Ribosomal protein L22 (From Topology)T: Ribosomal protein L22F: PF00237ECOD (1.6)
T [auth y]PF17135e7pzyy1 A: a/b three-layered sandwichesX: Ribosomal protein L13/L15p/L18e/L32eH: Ribosomal proteins L15p and L18e (From Topology)T: Ribosomal proteins L15p and L18eF: PF17135ECOD (1.6)
U [auth z]PF01280e7pzyz1 A: alpha arraysX: Ribosomal protein L19 (L19e) N-terminal domain (From Topology)H: Ribosomal protein L19 (L19e) N-terminal domain (From Topology)T: Ribosomal protein L19 (L19e) N-terminal domainF: PF01280ECOD (1.6)
U [auth z]PF01280e7pzyz2 A: alpha bundlesX: Ribosomal protein L19 (L19e) C-terminal domain (From Topology)H: Ribosomal protein L19 (L19e) C-terminal domain (From Topology)T: Ribosomal protein L19 (L19e) C-terminal domainF: PF01280ECOD (1.6)
V [auth 0]F_UNCLASSIFIEDe7pzy01 A: a+b two layersX: GP2-likeH: RplX-like (From Topology)T: RplX-likeF: F_UNCLASSIFIEDECOD (1.6)
V [auth 0]PF01775e7pzy02 A: a+b two layersX: GP2-likeH: RplX-like (From Topology)T: RplX-likeF: PF01775ECOD (1.6)
W [auth 2]PF01157e7pzy21 A: beta barrelsX: SH3H: SH3T: SH3F: PF01157ECOD (1.6)
X [auth 5]PF01776e7pzy51 A: a+b two layersX: Ribosomal protein L22e (From Topology)H: Ribosomal protein L22e (From Topology)T: Ribosomal protein L22eF: PF01776ECOD (1.6)
Y [auth 6]PF00238e7pzy61 A: beta barrelsX: Ribosomal protein L14-likeH: Ribosomal protein L14-related (From Topology)T: Ribosomal protein L14-relatedF: PF00238ECOD (1.6)
Z [auth 7]PF01246e7pzy71 A: few secondary structure elementsX: Glucocorticoid receptor-likeH: LIM domain-likeT: LIM domain-likeF: PF01246ECOD (1.6)
AA [auth 8]PF00276,PF03939e7pzy81 A: a+b two layersX: Alpha-beta plaitsH: Ribosomal proteins S24e, L23 and L15e (From Topology)T: Ribosomal proteins S24e, L23 and L15eF: PF00276,PF03939ECOD (1.6)
BA [auth 9]PF16906e7pzy91 A: beta barrelsX: SH3H: SH3T: SH3F: PF16906ECOD (1.6)
CA [auth AA]PF01777e7pzyAA1 A: beta barrelsX: SH3H: SH3T: SH3F: PF01777ECOD (1.6)
DA [auth AB]PF00828e7pzyAB1 A: a/b three-layered sandwichesX: Ribosomal protein L13/L15p/L18e/L32eH: Ribosomal proteins L15p and L18e (From Topology)T: Ribosomal proteins L15p and L18eF: PF00828ECOD (1.6)
EA [auth AC]PF01779e7pzyAC1 A: extended segmentsX: RPL29 (From Topology)H: RPL29 (From Topology)T: RPL29F: PF01779ECOD (1.6)
FA [auth AD]PF01248e7pzyAD1 A: a+b three layersX: Bacillus chorismate mutase-likeH: L30e-like (From Topology)T: L30e-likeF: PF01248ECOD (1.6)
GA [auth AE]PF01198e7pzyAE1 A: a+b two layersX: Ribosomal protein L31e-likeH: Ribosomal protein L31e/gp120 outer domain (From Topology)T: Ribosomal protein L31e/gp120 outer domainF: PF01198ECOD (1.6)
HA [auth AF]PF01655e7pzyAF1 A: a/b three-layered sandwichesX: Ribosomal protein L13/L15p/L18e/L32eH: Ribosomal protein L32e (From Topology)T: Ribosomal protein L32eF: PF01655ECOD (1.6)
IA [auth AG]PF01247e7pzyAG1 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: Alanine racemase-CF: PF01247ECOD (1.6)
JA [auth AH]PF01199e7pzyAH1 A: few secondary structure elementsX: Glucocorticoid receptor-likeH: RPL34 (From Topology)T: RPL34F: PF01199ECOD (1.6)
KA [auth AI]PF00831e7pzyAI1 A: alpha bundlesX: Long alpha-hairpinH: Ribosomal protein L29 (L29p) (From Topology)T: Ribosomal protein L29 (L29p)F: PF00831ECOD (1.6)
LA [auth AJ]PF01158e7pzyAJ1 A: alpha arraysX: 60S ribosomal protein rpL36 (L36e) (From Topology)H: 60S ribosomal protein rpL36 (L36e) (From Topology)T: 60S ribosomal protein rpL36 (L36e)F: PF01158ECOD (1.6)
MA [auth AK]PF01907e7pzyAK1 A: few secondary structure elementsX: Rubredoxin-likeH: Rubredoxin-relatedT: Rubredoxin-relatedF: PF01907ECOD (1.6)
NA [auth AL]PF01781e7pzyAL1 A: a+b two layersX: SRP9/14-likeH: Signal recognition particle alu RNA binding heterodimer SRP9/14-related (From Topology)T: Signal recognition particle alu RNA binding heterodimer SRP9/14-relatedF: PF01781ECOD (1.6)
OA [auth AM]PF00832e7pzyAM1 A: extended segmentsX: Ribosomal protein L39e (From Topology)H: Ribosomal protein L39e (From Topology)T: Ribosomal protein L39eF: PF00832ECOD (1.6)
PA [auth AN]PF01020e7pzyAN1 A: few secondary structure elementsX: Rubredoxin-likeH: Rubredoxin-relatedT: Rubredoxin-relatedF: PF01020ECOD (1.6)
QA [auth AO]PF05162e7pzyAO1 A: extended segmentsX: Ribosomal protein L41-A (From Topology)H: Ribosomal protein L41-A (From Topology)T: Ribosomal protein L41-AF: PF05162ECOD (1.6)
RA [auth AP]PF00935e7pzyAP1 A: few secondary structure elementsX: Rubredoxin-likeH: Rubredoxin-relatedT: Rubredoxin-relatedF: PF00935ECOD (1.6)
SA [auth AQ]PF01780e7pzyAQ1 A: few secondary structure elementsX: Rubredoxin-likeH: Rubredoxin-relatedT: Rubredoxin-relatedF: PF01780ECOD (1.6)
TA [auth i]F_UNCLASSIFIEDe7pzyi1 A: extended segmentsX: Suppressor protein STM1 (From Topology)H: Suppressor protein STM1 (From Topology)T: Suppressor protein STM1F: F_UNCLASSIFIEDECOD (1.6)
VA [auth B]PF00318e7pzyB1 A: a/b three-layered sandwichesX: Flavodoxin-likeH: Ribosomal protein S2/SIS domain (From Topology)T: Ribosomal protein S2/SIS domainF: PF00318ECOD (1.6)
WA [auth C]PF01015e7pzyC1 A: beta barrelsX: Ribosomal protein L25-likeH: 40S ribosomal protein S3A N-terminal domain (From Topology)T: 40S ribosomal protein S3A N-terminal domainF: PF01015ECOD (1.6)
WA [auth C]PF01015e7pzyC2 A: a+b two layersX: T-foldH: 40S ribosomal protein S3A C-terminal domain (From Topology)T: 40S ribosomal protein S3A C-terminal domainF: PF01015ECOD (1.6)
E [auth j]PF00181e7pzyj2 A: beta barrelsX: OB-foldH: Nucleic acid-binding proteins (From Topology)T: Nucleic acid-binding proteinsF: PF00181ECOD (1.6)
E [auth j]PF03947e7pzyj1 A: beta barrelsX: SH3H: SH3T: SH3F: PF03947ECOD (1.6)
XA [auth D]PF03719e7pzyD1 A: a+b two layersX: Ribosomal protein S5 domain 2-like (From Topology)H: Ribosomal protein S5 domain 2-like (From Topology)T: Ribosomal protein S5 domain 2-likeF: PF03719ECOD (1.6)
XA [auth D]PF00333e7pzyD2 A: a+b two layersX: dsRBD-likeH: dsRNA-binding domain-like (From Topology)T: dsRNA-binding domain-likeF: PF00333ECOD (1.6)
XA [auth D]PF00333e7pzyD3 A: extended segmentsX: N-terminal region in 40S ribosomal protein rpS2 (S5p) (From Topology)H: N-terminal region in 40S ribosomal protein rpS2 (S5p) (From Topology)T: N-terminal region in 40S ribosomal protein rpS2 (S5p)F: PF00333ECOD (1.6)
YA [auth E]PF00189e7pzyE2 A: a+b two layersX: T-foldH: Ribosomal protein S3-C (From Topology)T: Ribosomal protein S3-CF: PF00189ECOD (1.6)
YA [auth E]PF07650e7pzyE1 A: a+b two layersX: Alpha-lytic protease prodomain-likeH: KH-domainsT: Prokaryotic type KH domain (KH-domain type II)F: PF07650ECOD (1.6)
ZA [auth F]PF00900e7pzyF3 A: beta barrelsX: OB-foldH: Nucleic acid-binding proteins (From Topology)T: Nucleic acid-binding proteinsF: PF00900ECOD (1.6)
ZA [auth F]PF00467,PF16121e7pzyF2 A: beta barrelsX: SH3H: SH3T: SH3F: PF00467,PF16121ECOD (1.6)
ZA [auth F]PF00900,PF01479,PF08071e7pzyF1 A: a+b two layersX: beta-GraspH: Ubiquitin-relatedT: Alpha-L RNA-binding motifF: PF00900,PF01479,PF08071ECOD (1.6)
AB [auth G]PF00177e7pzyG1 A: alpha arraysX: Ribosomal protein S7 (From Topology)H: Ribosomal protein S7 (From Topology)T: Ribosomal protein S7F: PF00177ECOD (1.6)
BB [auth H]PF01092e7pzyH1 A: beta barrelsX: Ribosomal protein L25-likeH: Ribosomal protein L25-like (From Topology)T: Ribosomal protein L25-likeF: PF01092ECOD (1.6)
CB [auth I]PF01251e7pzyI2 A: a+b two layersX: Alpha-lytic protease prodomain-likeH: 40S ribosomal protein S7-A (From Topology)T: 40S ribosomal protein S7-AF: PF01251ECOD (1.6)
DB [auth J]PF01201e7pzyJ1 A: beta barrelsX: Ribosomal protein L14-likeH: Ribosomal protein L14-related (From Topology)T: Ribosomal protein L14-relatedF: PF01201ECOD (1.6)
EB [auth K]PF00163,PF01479e7pzyK1 A: a+b two layersX: beta-GraspH: Ubiquitin-relatedT: Alpha-L RNA-binding motifF: PF00163,PF01479ECOD (1.6)
FB [auth L]PF03501e7pzyL1 A: alpha arraysX: HTHH: HTHT: wingedF: PF03501ECOD (1.6)
GB [auth M]PF00366,PF16205e7pzyM1 A: beta barrelsX: OB-foldH: Nucleic acid-binding proteins (From Topology)T: Nucleic acid-binding proteinsF: PF00366,PF16205ECOD (1.6)
F [auth k]PF00297e7pzyk1 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: Alanine racemase-CF: PF00297ECOD (1.6)
HB [auth N]PF01248e7pzyN1 A: a+b three layersX: Bacillus chorismate mutase-likeH: L30e-like (From Topology)T: L30e-likeF: PF01248ECOD (1.6)
IB [auth O]PF08069e7pzyO2 A: alpha arraysX: HTHH: 40S ribosomal protein S13 N-terminal domain (From Topology)T: 40S ribosomal protein S13 N-terminal domainF: PF08069ECOD (1.6)
IB [auth O]PF00312e7pzyO1 A: alpha arraysX: S15/NS1 RNA-binding domain (From Topology)H: S15/NS1 RNA-binding domain (From Topology)T: S15/NS1 RNA-binding domainF: PF00312ECOD (1.6)
JB [auth P]PF00411e7pzyP1 A: mixed a+b and a/bX: Ribonuclease H-likeH: Ribonuclease H-like (From Topology)T: Ribonuclease H-likeF: PF00411ECOD (1.6)
KB [auth Q]PF00203e7pzyQ1 A: a+b two layersX: Ribosomal protein S19 (From Topology)H: Ribosomal protein S19 (From Topology)T: Ribosomal protein S19F: PF00203ECOD (1.6)
LB [auth R]PF00380e7pzyR1 A: a+b two layersX: Ribosomal protein S5 domain 2-like (From Topology)H: Ribosomal protein S5 domain 2-like (From Topology)T: Ribosomal protein S5 domain 2-likeF: PF00380ECOD (1.6)
MB [auth S]PF00833e7pzyS1 A: alpha arraysX: HTHH: HTHT: FF domainF: PF00833ECOD (1.6)
NB [auth T]PF00416e7pzyT1 A: alpha arraysX: HhH/H2THH: H2TH (From Topology)T: H2THF: PF00416ECOD (1.6)
OB [auth U]PF01090e7pzyU1 A: alpha arraysX: HTHH: HTHT: wingedF: PF01090ECOD (1.6)
PB [auth V]PF00338e7pzyV1 A: a+b two layersX: Alpha-beta plaitsH: Ribosomal protein S10 (From Topology)T: Ribosomal protein S10F: PF00338ECOD (1.6)
QB [auth W]PF01249e7pzyW1 A: a+b two layersX: 40S ribosomal protein rpS21 (S21e) (From Topology)H: 40S ribosomal protein rpS21 (S21e) (From Topology)T: 40S ribosomal protein rpS21 (S21e)F: PF01249ECOD (1.6)
G [auth l]PF00573e7pzyl2 A: a/b three-layered sandwichesX: Ribosomal protein L4 (From Topology)H: Ribosomal protein L4 (From Topology)T: Ribosomal protein L4F: PF00573ECOD (1.6)
G [auth l]PF14374e7pzyl1 A: extended segmentsX: C-terminal helical region in 60S ribosomal protein L4 (L4p) (From Topology)H: C-terminal helical region in 60S ribosomal protein L4 (L4p) (From Topology)T: C-terminal helical region in 60S ribosomal protein L4 (L4p)F: PF14374ECOD (1.6)
RB [auth X]PF00410e7pzyX1 A: a+b two layersX: R3H domain-likeH: Ribosomal protein S8, N-terminal domain (From Topology)T: Ribosomal protein S8, N-terminal domainF: PF00410ECOD (1.6)
RB [auth X]PF00410e7pzyX2 A: a+b two layersX: Ribosomal protein S8, C-terminal domain (From Topology)H: Ribosomal protein S8, C-terminal domain (From Topology)T: Ribosomal protein S8, C-terminal domainF: PF00410ECOD (1.6)
SB [auth Y]PF00164e7pzyY1 A: beta barrelsX: OB-foldH: Nucleic acid-binding proteins (From Topology)T: Nucleic acid-binding proteinsF: PF00164ECOD (1.6)
TB [auth Z]PF01282e7pzyZ1 A: a+b two layersX: Alpha-beta plaitsH: Ribosomal proteins S24e, L23 and L15e (From Topology)T: Ribosomal proteins S24e, L23 and L15eF: PF01282ECOD (1.6)
UB [auth a]PF03297e7pzya1 A: alpha arraysX: HTHH: HTHT: wingedF: PF03297ECOD (1.6)
VB [auth b]PF01283e7pzyb1 A: few secondary structure elementsX: Glucocorticoid receptor-likeH: LIM domain-likeT: LIM domain-likeF: PF01283ECOD (1.6)
WB [auth c]PF01667e7pzyc1 A: few secondary structure elementsX: Rubredoxin-likeH: Rubredoxin-relatedT: Rubredoxin-relatedF: PF01667ECOD (1.6)
XB [auth d]PF01200e7pzyd1 A: beta barrelsX: OB-foldH: Nucleic acid-binding proteins (From Topology)T: Nucleic acid-binding proteinsF: PF01200ECOD (1.6)
YB [auth e]PF00253e7pzye1 A: few secondary structure elementsX: Glucocorticoid receptor-likeH: LIM domain-likeT: LIM domain-likeF: PF00253ECOD (1.6)
ZB [auth f]PF04758e7pzyf1 A: extended segmentsX: 40S ribosomal protein S30 (S30e) (From Topology)H: 40S ribosomal protein S30 (S30e) (From Topology)T: 40S ribosomal protein S30 (S30e)F: PF04758ECOD (1.6)
AC [auth g]PF01599e7pzyg1 A: few secondary structure elementsX: Rubredoxin-likeH: Rubredoxin-relatedT: Rubredoxin-relatedF: PF01599ECOD (1.6)
H [auth m]PF14204,PF17144e7pzym1 A: mixed a+b and a/bX: Ribonuclease H-likeH: Ribonuclease H-like (From Topology)T: Ribonuclease H-likeF: PF14204,PF17144ECOD (1.6)
BC [auth h]PF00400e7pzyh1 A: beta duplicates or obligate multimersX: beta-propeller-likeH: beta-propellerT: 7-bladedF: PF00400ECOD (1.6)
I [auth n]PF01159e7pzyn1 A: beta barrelsX: SH3H: SH3T: SH3F: PF01159ECOD (1.6)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
J [auth o]PF08079Ribosomal L30 N-terminal domain (Ribosomal_L30_N)Ribosomal L30 N-terminal domainThis presumed domain is found at the N-terminus of Ribosomal L30 proteins and has been termed RL30NT or NUC018 [1].Domain
J [auth o]PF00327Ribosomal protein L30p/L7e (Ribosomal_L30)Ribosomal protein L30p/L7eThis family includes prokaryotic L30 and eukaryotic L7.Domain
K [auth p]PF01248Ribosomal protein L7Ae/L30e/S12e/Gadd45 family (Ribosomal_L7Ae)Ribosomal protein L7Ae/L30e/S12e/Gadd45 familyThis family includes: Ribosomal L7A from metazoa, Ribosomal L8-A and L8-B from fungi, 30S ribosomal protein HS6 from archaebacteria, 40S ribosomal protein S12 from eukaryotes, Ribosomal protein L30 from eukaryotes and archaebacteria. Gadd45 and MyD11 ...This family includes: Ribosomal L7A from metazoa, Ribosomal L8-A and L8-B from fungi, 30S ribosomal protein HS6 from archaebacteria, 40S ribosomal protein S12 from eukaryotes, Ribosomal protein L30 from eukaryotes and archaebacteria. Gadd45 and MyD118 [1].
Domain
L [auth q]PF00347Ribosomal protein L6 (Ribosomal_L6)Ribosomal protein L6- Domain
M [auth r]PF00252Ribosomal protein L16p/L10e (Ribosomal_L16)Ribosomal protein L16p/L10e- Domain
N [auth s]PF00281Ribosomal protein L5 (Ribosomal_L5)Ribosomal protein L5- Domain
N [auth s]PF00673ribosomal L5P family C-terminus (Ribosomal_L5_C)ribosomal L5P family C-terminusThis region is found associated with Pfam:PF00281.Domain
O [auth t]PF01294Ribosomal protein L13e (Ribosomal_L13e)Ribosomal protein L13e- Family
P [auth u]PF01929Ribosomal protein L14 (Ribosomal_L14e)Ribosomal protein L14- Family
Q [auth v]PF00827Ribosomal L15 (Ribosomal_L15e)Ribosomal L15- Family
R [auth w]PF00572Ribosomal protein L13 (Ribosomal_L13)Ribosomal protein L13- Family
S [auth x]PF00237Ribosomal protein L22p/L17e (Ribosomal_L22)Ribosomal protein L22p/L17eThis family includes L22 from prokaryotes and chloroplasts and L17 from eukaryotes.Domain
T [auth y]PF17135Ribosomal protein 60S L18 and 50S L18e (Ribosomal_L18)Ribosomal protein 60S L18 and 50S L18e- Family
U [auth z]PF01280Ribosomal protein L19e (Ribosomal_L19e)Ribosomal protein L19e- Family
V [auth 0]PF01775Ribosomal proteins 50S-L18Ae/60S-L20/60S-L18A (Ribosomal_L18A)Ribosomal proteins 50S-L18Ae/60S-L20/60S-L18AThis family includes: archaeal 50S ribosomal protein L18Ae, often referred to as L20e or LX; fungal 60S ribosomal protein L20; and higher eukaryote 60S ribosomal protein L18A.Domain
W [auth 2]PF01157Ribosomal protein L21e (Ribosomal_L21e)Ribosomal protein L21e- Family
X [auth 5]PF01776Ribosomal L22e protein family (Ribosomal_L22e)Ribosomal L22e protein family- Family
Y [auth 6]PF00238Ribosomal protein L14p/L23e (Ribosomal_L14)Ribosomal protein L14p/L23e- Domain
Z [auth 7]PF01246Ribosomal protein L24e (Ribosomal_L24e)Ribosomal protein L24e- Domain
AA [auth 8]PF03939Ribosomal protein L23, N-terminal domain (Ribosomal_L23eN)Ribosomal protein L23, N-terminal domain- Family
AA [auth 8]PF00276Ribosomal protein L23 (Ribosomal_L23)Ribosomal protein L23- Family
BA [auth 9]PF16906Ribosomal proteins L26 eukaryotic, L24P archaeal (Ribosomal_L26)Ribosomal proteins L26 eukaryotic, L24P archaeal- Family
CA [auth AA]PF01777Ribosomal L27e protein family (Ribosomal_L27e)Ribosomal L27e protein family- Family
DA [auth AB]PF00828Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A (Ribosomal_L27A)Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A- Family
EA [auth AC]PF01779Ribosomal L29e protein family (Ribosomal_L29e)Ribosomal L29e protein family- Family
FA [auth AD]PF01248Ribosomal protein L7Ae/L30e/S12e/Gadd45 family (Ribosomal_L7Ae)Ribosomal protein L7Ae/L30e/S12e/Gadd45 familyThis family includes: Ribosomal L7A from metazoa, Ribosomal L8-A and L8-B from fungi, 30S ribosomal protein HS6 from archaebacteria, 40S ribosomal protein S12 from eukaryotes, Ribosomal protein L30 from eukaryotes and archaebacteria. Gadd45 and MyD11 ...This family includes: Ribosomal L7A from metazoa, Ribosomal L8-A and L8-B from fungi, 30S ribosomal protein HS6 from archaebacteria, 40S ribosomal protein S12 from eukaryotes, Ribosomal protein L30 from eukaryotes and archaebacteria. Gadd45 and MyD118 [1].
Domain
GA [auth AE]PF01198Ribosomal protein L31e (Ribosomal_L31e)Ribosomal protein L31e- Family
HA [auth AF]PF01655Ribosomal protein L32 (Ribosomal_L32e)Ribosomal protein L32- Family
IA [auth AG]PF01247Ribosomal protein L35Ae (Ribosomal_L35Ae)Ribosomal protein L35Ae- Domain
JA [auth AH]PF01199Ribosomal protein L34e (Ribosomal_L34e)Ribosomal protein L34e- Family
KA [auth AI]PF00831Ribosomal L29 protein (Ribosomal_L29)Ribosomal L29 protein- Family
LA [auth AJ]PF01158Ribosomal protein L36e (Ribosomal_L36e)Ribosomal protein L36e- Family
MA [auth AK]PF01907Ribosomal protein L37e (Ribosomal_L37e)Ribosomal protein L37e- Family
NA [auth AL]PF01781Ribosomal L38e protein family (Ribosomal_L38e)Ribosomal L38e protein family- Family
OA [auth AM]PF00832Ribosomal L39 protein (Ribosomal_L39)Ribosomal L39 protein- Family
PA [auth AN]PF01020Ribosomal L40e family (Ribosomal_L40e)Ribosomal L40e family- Family
QA [auth AO]PF05162Ribosomal protein L41 (Ribosomal_L41)Ribosomal protein L41- Family
RA [auth AP]PF00935Ribosomal protein L44 (Ribosomal_L44)Ribosomal protein L44- Family
SA [auth AQ]PF01780Ribosomal L37ae protein family (Ribosomal_L37ae)Ribosomal L37ae protein family- Family
TA [auth i]PF09598Stm1 (Stm1_N)Stm1- Family
VA [auth B]PF00318Ribosomal protein S2 (Ribosomal_S2)Ribosomal protein S2- Family
WA [auth C]PF01015Ribosomal S3Ae family (Ribosomal_S3Ae)Ribosomal S3Ae family- Family
E [auth j]PF03947Ribosomal Proteins L2, C-terminal domain (Ribosomal_L2_C)Ribosomal Proteins L2, C-terminal domain- Domain
E [auth j]PF00181Ribosomal Proteins L2, RNA binding domain (Ribosomal_L2)Ribosomal Proteins L2, RNA binding domain- Domain
XA [auth D]PF03719Ribosomal protein S5, C-terminal domain (Ribosomal_S5_C)Ribosomal protein S5, C-terminal domain- Domain
XA [auth D]PF00333Ribosomal protein S5, N-terminal domain (Ribosomal_S5)Ribosomal protein S5, N-terminal domain- Domain
YA [auth E]PF07650KH domain (KH_2)KH domain- Domain
YA [auth E]PF00189Ribosomal protein S3, C-terminal domain (Ribosomal_S3_C)Ribosomal protein S3, C-terminal domainThis family contains a central domain Pfam:PF00013, hence the amino and carboxyl terminal domains are stored separately. This is a minimal carboxyl-terminal domain. Some are much longer.Domain
ZA [auth F]PF00900Ribosomal family S4e (Ribosomal_S4e)Ribosomal family S4e- Family
ZA [auth F]PF1612140S ribosomal protein S4 C-terminus (40S_S4_C)40S ribosomal protein S4 C-terminus- Family
ZA [auth F]PF08071RS4NT (NUC023) domain (RS4NT)RS4NT (NUC023) domainThis is the N-terminal domain of Ribosomal S4 / S4e proteins. This domain is associated with S4 and KOW domains [1].Domain
ZA [auth F]PF01479S4 domain (S4)S4 domainThe S4 domain is a small domain consisting of 60-65 amino acid residues that was detected in the bacterial ribosomal protein S4, eukaryotic ribosomal S9, two families of pseudouridine synthases, a novel family of predicted RNA methylases, a yeast pro ...The S4 domain is a small domain consisting of 60-65 amino acid residues that was detected in the bacterial ribosomal protein S4, eukaryotic ribosomal S9, two families of pseudouridine synthases, a novel family of predicted RNA methylases, a yeast protein containing a pseudouridine synthetase and a deaminase domain, bacterial tyrosyl-tRNA synthetases, and a number of uncharacterized, small proteins that may be involved in translation regulation [1]. The S4 domain probably mediates binding to RNA.
Domain
ZA [auth F]PF00467KOW motif (KOW)KOW motif- Family
AB [auth G]PF00177Ribosomal protein S7p/S5e (Ribosomal_S7)Ribosomal protein S7p/S5eThis family contains ribosomal protein S7 from prokaryotes and S5 from eukaryotes.Domain
BB [auth H]PF01092Ribosomal protein S6e (Ribosomal_S6e)Ribosomal protein S6e- Family
CB [auth I]PF01251Ribosomal protein S7e (Ribosomal_S7e)Ribosomal protein S7e- Family
DB [auth J]PF01201Ribosomal protein S8e (Ribosomal_S8e)Ribosomal protein S8e- Family
EB [auth K]PF00163Ribosomal protein S4/S9 N-terminal domain (Ribosomal_S4)Ribosomal protein S4/S9 N-terminal domain- Family
EB [auth K]PF01479S4 domain (S4)S4 domainThe S4 domain is a small domain consisting of 60-65 amino acid residues that was detected in the bacterial ribosomal protein S4, eukaryotic ribosomal S9, two families of pseudouridine synthases, a novel family of predicted RNA methylases, a yeast pro ...The S4 domain is a small domain consisting of 60-65 amino acid residues that was detected in the bacterial ribosomal protein S4, eukaryotic ribosomal S9, two families of pseudouridine synthases, a novel family of predicted RNA methylases, a yeast protein containing a pseudouridine synthetase and a deaminase domain, bacterial tyrosyl-tRNA synthetases, and a number of uncharacterized, small proteins that may be involved in translation regulation [1]. The S4 domain probably mediates binding to RNA.
Domain
FB [auth L]PF03501Plectin/S10 domain (S10_plectin)Plectin/S10 domainThis presumed domain is found at the N-terminus of some isoforms of the cytoskeletal muscle protein plectin as well as the ribosomal S10 protein. This domain may be involved in RNA binding.Domain
GB [auth M]PF00366Ribosomal protein S17 (Ribosomal_S17)Ribosomal protein S17- Domain
GB [auth M]PF16205Ribosomal_S17 N-terminal (Ribosomal_S17_N)Ribosomal_S17 N-terminal- Family
F [auth k]PF00297Ribosomal protein L3 (Ribosomal_L3)Ribosomal protein L3- Family
HB [auth N]PF01248Ribosomal protein L7Ae/L30e/S12e/Gadd45 family (Ribosomal_L7Ae)Ribosomal protein L7Ae/L30e/S12e/Gadd45 familyThis family includes: Ribosomal L7A from metazoa, Ribosomal L8-A and L8-B from fungi, 30S ribosomal protein HS6 from archaebacteria, 40S ribosomal protein S12 from eukaryotes, Ribosomal protein L30 from eukaryotes and archaebacteria. Gadd45 and MyD11 ...This family includes: Ribosomal L7A from metazoa, Ribosomal L8-A and L8-B from fungi, 30S ribosomal protein HS6 from archaebacteria, 40S ribosomal protein S12 from eukaryotes, Ribosomal protein L30 from eukaryotes and archaebacteria. Gadd45 and MyD118 [1].
Domain
IB [auth O]PF08069Ribosomal S13/S15 N-terminal domain (Ribosomal_S13_N)Ribosomal S13/S15 N-terminal domainThis domain is found at the N-terminus of ribosomal S13 and S15 proteins. This domain is also identified as NUC021 [1].Domain
IB [auth O]PF00312Ribosomal protein S15 (Ribosomal_S15)Ribosomal protein S15- Domain
JB [auth P]PF00411Ribosomal protein S11 (Ribosomal_S11)Ribosomal protein S11- Family
KB [auth Q]PF00203Ribosomal protein S19 (Ribosomal_S19)Ribosomal protein S19- Domain
LB [auth R]PF00380Ribosomal protein S9/S16 (Ribosomal_S9)Ribosomal protein S9/S16- Family
MB [auth S]PF00833Ribosomal S17 (Ribosomal_S17e)Ribosomal S17- Family
NB [auth T]PF00416Ribosomal protein S13/S18 (Ribosomal_S13)Ribosomal protein S13/S18- Family
OB [auth U]PF01090Ribosomal protein S19e (Ribosomal_S19e)Ribosomal protein S19e- Family
PB [auth V]PF00338Ribosomal protein S10p/S20e (Ribosomal_S10)Ribosomal protein S10p/S20eThis family includes small ribosomal subunit S10 from prokaryotes and S20 from eukaryotes.Domain
QB [auth W]PF01249Ribosomal protein S21e (Ribosomal_S21e)Ribosomal protein S21e- Family
G [auth l]PF1437460S ribosomal protein L4 C-terminal domain (Ribos_L4_asso_C)60S ribosomal protein L4 C-terminal domainThis family is found at the very C-terminal of 60 ribosomal L4 proteins.Domain
G [auth l]PF00573Ribosomal protein L4/L1 family (Ribosomal_L4)Ribosomal protein L4/L1 family- Family
RB [auth X]PF00410Ribosomal protein S8 (Ribosomal_S8)Ribosomal protein S8- Domain
SB [auth Y]PF00164Ribosomal protein S12/S23 (Ribosom_S12_S23)Ribosomal protein S12/S23- Family
TB [auth Z]PF01282Ribosomal protein S24e (Ribosomal_S24e)Ribosomal protein S24e- Family
UB [auth a]PF03297S25 ribosomal protein (Ribosomal_S25)S25 ribosomal protein- Family
VB [auth b]PF01283Ribosomal protein S26e (Ribosomal_S26e)Ribosomal protein S26e- Family
WB [auth c]PF01667Ribosomal protein S27 (Ribosomal_S27e)Ribosomal protein S27- Family
XB [auth d]PF01200Ribosomal protein S28e (Ribosomal_S28e)Ribosomal protein S28e- Family
YB [auth e]PF00253Ribosomal protein S14p/S29e (Ribosomal_S14)Ribosomal protein S14p/S29e- Family
ZB [auth f]PF04758Ribosomal protein S30 (Ribosomal_S30)Ribosomal protein S30- Family
AC [auth g]PF01599Ribosomal protein S27a (Ribosomal_S27)Ribosomal protein S27aThis family of ribosomal proteins consists mainly of the 40S ribosomal protein S27a which is synthesised as a C-terminal extension of ubiquitin (CEP). The S27a domain compromises the C-terminal half of the protein. The synthesis of ribosomal proteins ...This family of ribosomal proteins consists mainly of the 40S ribosomal protein S27a which is synthesised as a C-terminal extension of ubiquitin (CEP). The S27a domain compromises the C-terminal half of the protein. The synthesis of ribosomal proteins as extensions of ubiquitin promotes their incorporation into nascent ribosomes by a transient metabolic stabilisation and is required for efficient ribosome biogenesis [3]. The ribosomal extension protein S27a contains a basic region that is proposed to form a zinc finger; its fusion gene is proposed as a mechanism to maintain a fixed ratio between ubiquitin necessary for degrading proteins and ribosomes a source of proteins [2].
Domain
H [auth m]PF17144Ribosomal large subunit proteins 60S L5, and 50S L18 (Ribosomal_L5e)Ribosomal large subunit proteins 60S L5, and 50S L18- Family
H [auth m]PF14204Ribosomal L18 C-terminal region (Ribosomal_L18_c)Ribosomal L18 C-terminal regionThis domain is the C-terminal end of ribosomal L18/L5 proteins.Domain
BC [auth h]PF00400WD domain, G-beta repeat (WD40)WD domain, G-beta repeat- Repeat
I [auth n]PF01159Ribosomal protein L6e (Ribosomal_L6e)Ribosomal protein L6e- Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
A [auth 1]25S ribosomal RNA---
J [auth o]Ribosomal 60S subunit protein L7A
K [auth p]60S ribosomal protein L8
L [auth q]Ribosomal 60S subunit protein L9B
M [auth r]Ribosomal 60S subunit protein L10
N [auth s]Ribosomal 60S subunit protein L11B
O [auth t]60S ribosomal protein L13
P [auth u]Ribosomal 60S subunit protein L14B
Q [auth v]Ribosomal protein L15
R [auth w]Ribosomal 60S subunit protein L16A
S [auth x]Ribosomal 60S subunit protein L17B
B [auth 3]5S ribosomal RNA---
T [auth y]Ribosomal 60S subunit protein L18A
U [auth z]Ribosomal protein L19
V [auth 0]60S ribosomal protein L20
W [auth 2]Ribosomal 60S subunit protein L21A
X [auth 5]Ribosomal 60S subunit protein L22B
Y [auth 6]Ribosomal 60S subunit protein L23B
Z [auth 7]Ribosomal 60S subunit protein L24A
AA [auth 8]Ribosomal 60S subunit protein L25
BA [auth 9]Ribosomal 60S subunit protein L26B
CA [auth AA]60S ribosomal protein L27
C [auth 4]5.8S ribosomal RNA---
DA [auth AB]Ribosomal 60S subunit protein L28
EA [auth AC]60S ribosomal protein L29
FA [auth AD]Ribosomal 60S subunit protein L30
GA [auth AE]Ribosomal 60S subunit protein L31B
HA [auth AF]Ribosomal 60S subunit protein L32
IA [auth AG]Ribosomal 60S subunit protein L33A
JA [auth AH]Ribosomal 60S subunit protein L34B
KA [auth AI]Ribosomal 60S subunit protein L35A
LA [auth AJ]60S ribosomal protein L36
MA [auth AK]Ribosomal protein L37
D [auth 10]Mixture of endogenous E-tRNAs---
NA [auth AL]Ribosomal 60S subunit protein L38
OA [auth AM]60S ribosomal protein L39
PA [auth AN]Rpl40bp
QA [auth AO]60S ribosomal protein L41
RA [auth AP]Ribosomal 60S subunit protein L42A
SA [auth AQ]Ribosomal 60S subunit protein L43A
TA [auth i]HABP4_PAI-RBP1 domain-containing protein
UA [auth A]18S ribosomal RNA---
VA [auth B]40S ribosomal protein S0
WA [auth C]40S ribosomal protein S1
E [auth j]Ribosomal 60S subunit protein L2A
XA [auth D]Ribosomal 40S subunit protein S2
YA [auth E]Ribosomal 40S subunit protein S3
ZA [auth F]40S ribosomal protein S4
AB [auth G]Ribosomal 40S subunit protein S5
BB [auth H]40S ribosomal protein S6
CB [auth I]40S ribosomal protein S7
DB [auth J]40S ribosomal protein S8
EB [auth K]Ribosomal 40S subunit protein S9B
FB [auth L]Ribosomal 40S subunit protein S10A -
GB [auth M]Ribosomal 40S subunit protein S11A
F [auth k]60S ribosomal protein L3
HB [auth N]40S ribosomal protein S12
IB [auth O]Ribosomal 40S subunit protein S13
JB [auth P]Ribosomal 40S subunit protein S14B
KB [auth Q]Ribosomal 40S subunit protein S15
LB [auth R]Ribosomal 40S subunit protein S16A
MB [auth S]Ribosomal 40S subunit protein S17B
NB [auth T]Ribosomal 40S subunit protein S18B
OB [auth U]Ribosomal 40S subunit protein S19A
PB [auth V]Ribosomal 40S subunit protein S20
QB [auth W]40S ribosomal protein S21
G [auth l]Ribosomal 60S subunit protein L4B
RB [auth X]40S ribosomal protein S22-A
SB [auth Y]Ribosomal 40S subunit protein S23B
TB [auth Z]40S ribosomal protein S24
UB [auth a]40S ribosomal protein S25 -
VB [auth b]40S ribosomal protein S26
WB [auth c]40S ribosomal protein S27
XB [auth d]Ribosomal 40S subunit protein S28B
YB [auth e]Ribosomal 40S subunit protein S29A
ZB [auth f]40S ribosomal protein S30
AC [auth g]Ubiquitin-ribosomal 40S subunit protein S31 fusion protein
H [auth m]Ribosomal 60S subunit protein L5
BC [auth h]Guanine nucleotide-binding protein subunit beta-like protein
I [auth n]60S ribosomal protein L6

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
J [auth o]IPR035808Large ribosomal subunit protein uL30, eukaryotic/archaealDomain
J [auth o]IPR012988Large ribosomal subunit protein uL30, N-terminal, eukaryotesDomain
J [auth o]IPR036919Large ribosomal subunit protein uL30, ferredoxin-like fold domain superfamilyHomologous Superfamily
J [auth o]IPR039699Large ribosomal subunit protein uL30Family
J [auth o]IPR005998Large ribosomal subunit protein uL30, eukaryoticFamily
J [auth o]IPR016082Large ribosomal subunit protein uL30-like, ferredoxin-like fold domainDomain
K [auth p]IPR001921Large ribosomal subunit protein eL8Family
K [auth p]IPR004038Ribosomal protein eL8/eL30/eS12/Gadd45Domain
K [auth p]IPR004037Large ribosomal subunit protein eL8-like, conserved siteConserved Site
K [auth p]IPR029064Ribosomal protein eL30-like superfamilyHomologous Superfamily
K [auth p]IPR018492Ribosomal protein eL8/Nhp2 familyFamily
L [auth q]IPR020040Large ribosomal subunit protein uL6, alpha-beta domainDomain
L [auth q]IPR002359Large ribosomal subunit protein uL6, conserved site-2Conserved Site
L [auth q]IPR036789Large ribosomal subunit protein uL6-like, alpha-beta domain superfamilyHomologous Superfamily
L [auth q]IPR000702Large ribosomal subunit protein uL6-likeFamily
M [auth r]IPR036920Large ribosomal subunit protein uL16 superfamilyHomologous Superfamily
M [auth r]IPR001197Large ribosomal subunit protein uL16, eukaryotes/archaeaFamily
M [auth r]IPR016180Large ribosomal subunit protein uL16 domainDomain
M [auth r]IPR047873Large ribosomal subunit protein uL16Family
M [auth r]IPR018255Large ribosomal subunit protein uL16, conserved site, eukaryotes/archaeaConserved Site
N [auth s]IPR020929Large ribosomal subunit protein uL5, conserved siteConserved Site
N [auth s]IPR022803Large ribosomal subunit protein uL5 domain superfamilyHomologous Superfamily
N [auth s]IPR031309Large ribosomal subunit protein uL5, C-terminalDomain
N [auth s]IPR031310Large ribosomal subunit protein uL5, N-terminalDomain
N [auth s]IPR002132Large ribosomal subunit protein uL5Family
O [auth t]IPR001380Large ribosomal subunit protein eL13Family
O [auth t]IPR018256Large ribosomal subunit protein eL13, conserved siteConserved Site
P [auth u]IPR039660Large ribosomal subunit protein eL14Family
P [auth u]IPR041985Large ribosomal subunit protein eL14, KOW motifDomain
P [auth u]IPR014722Large ribosomal subunit protein uL2, domain 2Homologous Superfamily
P [auth u]IPR002784Large ribosomal subunit protein eL14 domainDomain
P [auth u]IPR008991Translation protein SH3-like domain superfamilyHomologous Superfamily
Q [auth v]IPR012678Ribosomal protein uL23/eL15/eS24 core domain superfamilyHomologous Superfamily
Q [auth v]IPR020925Large ribosomal subunit protein eL15, conserved siteConserved Site
Q [auth v]IPR024794Large ribosomal subunit protein eL15 core domain superfamilyHomologous Superfamily
Q [auth v]IPR000439Large ribosomal subunit protein eL15Family
R [auth w]IPR005755Large ribosomal subunit protein uL13, eukaryotic/archaealFamily
R [auth w]IPR023563Large ribosomal subunit protein uL13, conserved siteConserved Site
R [auth w]IPR005822Large ribosomal subunit protein uL13Family
R [auth w]IPR036899Large ribosomal subunit protein uL13 superfamilyHomologous Superfamily
S [auth x]IPR018260Large ribosomal subunit protein uL22, conserved siteConserved Site
S [auth x]IPR036394Ribosomal protein uL22 superfamilyHomologous Superfamily
S [auth x]IPR001063Large ribosomal subunit protein uL22Family
S [auth x]IPR005721Large ribosomal subunit protein uL22, eukaryotic/archaealFamily
T [auth y]IPR021131Large ribosomal subunit protein uL15/eL18Domain
T [auth y]IPR021132Large ribosomal subunit protein eL18, conserved siteConserved Site
T [auth y]IPR000039Large ribosomal subunit protein eL18Family
T [auth y]IPR036227Large ribosomal subunit protein uL15/eL18 superfamilyHomologous Superfamily
U [auth z]IPR015972Large ribosomal subunit protein eL19, domain 1Homologous Superfamily
U [auth z]IPR039547Large ribosomal subunit protein eL19Family
U [auth z]IPR023638Large ribosomal subunit protein eL19, conserved siteConserved Site
U [auth z]IPR035970Large ribosomal subunit protein eL19 superfamilyHomologous Superfamily
U [auth z]IPR000196Large ribosomal subunit protein eL19 domainDomain
U [auth z]IPR033935Large ribosomal subunit protein eL19, eukaryoticDomain
V [auth 0]IPR028877Large ribosomal subunit protein eL20Family
V [auth 0]IPR023573Large ribosomal subunit protein eL20 domainDomain
V [auth 0]IPR021138Large ribosomal subunit protein eL20, eukaryotesFamily
W [auth 2]IPR018259Large ribosomal subunit protein eL21, conserved siteConserved Site
W [auth 2]IPR036948Large ribosomal subunit protein eL21 superfamilyHomologous Superfamily
W [auth 2]IPR001147Large ribosomal subunit protein eL21Family
W [auth 2]IPR008991Translation protein SH3-like domain superfamilyHomologous Superfamily
X [auth 5]IPR002671Large ribosomal subunit protein eL22Family
X [auth 5]IPR038526Large ribosomal subunit protein eL22 superfamilyHomologous Superfamily
Y [auth 6]IPR036853Large ribosomal subunit protein uL14 superfamilyHomologous Superfamily
Y [auth 6]IPR000218Large ribosomal subunit protein uL14Family
Y [auth 6]IPR019972Large ribosomal subunit protein uL14, conserved siteConserved Site
Z [auth 7]IPR000988Large ribosomal subunit protein eL24-relatedFamily
Z [auth 7]IPR023442Large ribosomal subunit protein eL24, conserved siteConserved Site
Z [auth 7]IPR038630Ribosomal protein L24e/L24 superfamilyHomologous Superfamily
AA [auth 8]IPR012678Ribosomal protein uL23/eL15/eS24 core domain superfamilyHomologous Superfamily
AA [auth 8]IPR012677Nucleotide-binding alpha-beta plait domain superfamilyHomologous Superfamily
AA [auth 8]IPR005633Large ribosomal subunit protein uL23, N-terminalDomain
AA [auth 8]IPR001014Large ribosomal subunit protein uL23, conserved siteConserved Site
AA [auth 8]IPR013025Large ribosomal subunit protein uL23-likeFamily
BA [auth 9]IPR041988Large ribosomal subunit protein uL24, KOW domainDomain
BA [auth 9]IPR014722Large ribosomal subunit protein uL2, domain 2Homologous Superfamily
BA [auth 9]IPR008991Translation protein SH3-like domain superfamilyHomologous Superfamily
BA [auth 9]IPR005756Large ribosomal subunit protein uL24, eukaryotic/archaealFamily
BA [auth 9]IPR005825Large ribosomal subunit protein uL24, conserved siteConserved Site
CA [auth AA]IPR018262Large ribosomal subunit protein eL27, conserved siteConserved Site
CA [auth AA]IPR038655Large ribosomal subunit protein eL27 superfamilyHomologous Superfamily
CA [auth AA]IPR008991Translation protein SH3-like domain superfamilyHomologous Superfamily
CA [auth AA]IPR001141Large ribosomal subunit protein eL27Family
CA [auth AA]IPR041991Large ribosomal subunit protein eL27, KOW domainDomain
DA [auth AB]IPR021131Large ribosomal subunit protein uL15/eL18Domain
DA [auth AB]IPR030878Large ribosomal subunit protein uL15Family
DA [auth AB]IPR001196Large ribosomal subunit protein uL15, conserved siteConserved Site
DA [auth AB]IPR036227Large ribosomal subunit protein uL15/eL18 superfamilyHomologous Superfamily
EA [auth AC]IPR002673Large ribosomal subunit protein eL29Family
FA [auth AD]IPR022991Large ribosomal subunit protein eL30, conserved siteConserved Site
FA [auth AD]IPR004038Ribosomal protein eL8/eL30/eS12/Gadd45Domain
FA [auth AD]IPR039109Large ribosomal subunit protein eL30-likeFamily
FA [auth AD]IPR029064Ribosomal protein eL30-like superfamilyHomologous Superfamily
GA [auth AE]IPR020052Large ribosomal subunit protein eL31, conserved siteConserved Site
GA [auth AE]IPR023621Large ribosomal subunit protein eL31 domain superfamilyHomologous Superfamily
GA [auth AE]IPR000054Large ribosomal subunit protein eL31Family
HA [auth AF]IPR036351Large ribosomal subunit protein eL32 superfamilyHomologous Superfamily
HA [auth AF]IPR001515Large ribosomal subunit protein eL32Family
HA [auth AF]IPR018263Large ribosomal subunit protein eL32, conserved siteConserved Site
IA [auth AG]IPR038661Large ribosomal subunit protein eL33 superfamilyHomologous Superfamily
IA [auth AG]IPR009000Translation protein, beta-barrel domain superfamilyHomologous Superfamily
IA [auth AG]IPR001780Large ribosomal subunit protein eL33Family
IA [auth AG]IPR018266Large ribosomal subunit protein eL33, conserved siteConserved Site
JA [auth AH]IPR008195Large ribosomal subunit protein eL34Family
JA [auth AH]IPR018065Large ribosomal subunit protein eL34, conserved siteConserved Site
KA [auth AI]IPR045059Large ribosomal subunit protein uL29, eukaryotesFamily
KA [auth AI]IPR001854Large ribosomal subunit protein uL29Family
KA [auth AI]IPR036049Large ribosomal subunit protein uL29 superfamilyHomologous Superfamily
LA [auth AJ]IPR000509Large ribosomal subunit protein eL36Family
LA [auth AJ]IPR038097Large ribosomal subunit protein eL36 domain superfamilyHomologous Superfamily
MA [auth AK]IPR001569Large ribosomal subunit protein eL37Family
MA [auth AK]IPR018267Large ribosomal subunit protein eL37, conserved siteConserved Site
MA [auth AK]IPR011332Zinc-binding ribosomal proteinHomologous Superfamily
MA [auth AK]IPR011331Large ribosomal subunit protein eL37/eL43Homologous Superfamily
NA [auth AL]IPR002675Large ribosomal subunit protein eL38Family
NA [auth AL]IPR038464Large ribosomal subunit protein eL38 superfamilyHomologous Superfamily
OA [auth AM]IPR023626Large ribosomal subunit protein eL39 domain superfamilyHomologous Superfamily
OA [auth AM]IPR000077Large ribosomal subunit protein eL39Family
OA [auth AM]IPR020083Large ribosomal subunit protein eL39, conserved siteConserved Site
PA [auth AN]IPR001975Large ribosomal subunit protein eL40 domainDomain
PA [auth AN]IPR038587Large ribosomal subunit protein eL40 superfamilyHomologous Superfamily
PA [auth AN]IPR011332Zinc-binding ribosomal proteinHomologous Superfamily
QA [auth AO]IPR007836Large ribosomal subunit protein eS32Family
RA [auth AP]IPR011332Zinc-binding ribosomal proteinHomologous Superfamily
RA [auth AP]IPR000552Large ribosomal subunit protein eL42Family
SA [auth AQ]IPR002674Large ribosomal subunit protein eL43Family
SA [auth AQ]IPR011332Zinc-binding ribosomal proteinHomologous Superfamily
SA [auth AQ]IPR011331Large ribosomal subunit protein eL37/eL43Homologous Superfamily
TA [auth i]IPR019084STM1-like, N-terminalDomain
TA [auth i]IPR039764RNA binding protein HABP4/SERBP1-likeFamily
TA [auth i]IPR006861Hyaluronan/mRNA-binding proteinDomain
VA [auth B]IPR005707Small ribosomal subunit protein uS2, eukaryotic/archaealFamily
VA [auth B]IPR023591Small ribosomal subunit protein uS2, flavodoxin-like domain superfamilyHomologous Superfamily
VA [auth B]IPR018130Small ribosomal subunit protein uS2, conserved siteConserved Site
VA [auth B]IPR001865Small ribosomal subunit protein uS2Family
VA [auth B]IPR027498Small ribosomal subunit protein uS2, eukaryoticFamily
WA [auth C]IPR001593Small ribosomal subunit protein eS1Family
WA [auth C]IPR018281Small ribosomal subunit protein eS1, conserved siteConserved Site
WA [auth C]IPR027500Small ribosomal subunit protein eS1, eukaryotesFamily
E [auth j]IPR022671Large ribosomal subunit protein uL2, conserved siteConserved Site
E [auth j]IPR022669Large ribosomal subunit protein uL2, C-terminalDomain
E [auth j]IPR012340Nucleic acid-binding, OB-foldHomologous Superfamily
E [auth j]IPR014722Large ribosomal subunit protein uL2, domain 2Homologous Superfamily
E [auth j]IPR022666Large ribosomal subunit protein uL2, RNA-binding domainDomain
E [auth j]IPR008991Translation protein SH3-like domain superfamilyHomologous Superfamily
E [auth j]IPR014726Large ribosomal subunit protein uL2, domain 3Homologous Superfamily
E [auth j]IPR002171Large ribosomal subunit protein uL2Family
XA [auth D]IPR000851Small ribosomal subunit protein uS5Family
XA [auth D]IPR005711Small ribosomal subunit protein uS5, eukaryotic/archaealFamily
XA [auth D]IPR005324Small ribosomal subunit protein uS5, C-terminalDomain
XA [auth D]IPR013810Small ribosomal subunit protein uS5, N-terminalDomain
XA [auth D]IPR020568Ribosomal protein uS5 domain 2-type superfamilyHomologous Superfamily
XA [auth D]IPR018192Small ribosomal subunit protein uS5, N-terminal, conserved siteConserved Site
XA [auth D]IPR014721Small ribosomal subunit protein uS5 domain 2-type fold, subgroupHomologous Superfamily
YA [auth E]IPR001351Small ribosomal subunit protein uS3, C-terminalDomain
YA [auth E]IPR009019K homology domain superfamily, prokaryotic typeHomologous Superfamily
YA [auth E]IPR004044K Homology domain, type 2Domain
YA [auth E]IPR015946K homology domain-like, alpha/betaHomologous Superfamily
YA [auth E]IPR036419Ribosomal protein S3, C-terminal domain superfamilyHomologous Superfamily
YA [auth E]IPR005703Small ribosomal subunit protein uS3, eukaryotic/archaealFamily
ZA [auth F]IPR018199Small ribosomal subunit protein eS4, N-terminal, conserved siteConserved Site
ZA [auth F]IPR013843Small ribosomal subunit protein eS4, N-terminalDomain
ZA [auth F]IPR032277Small ribosomal subunit protein eS4, C-terminal domainDomain
ZA [auth F]IPR002942RNA-binding S4 domainDomain
ZA [auth F]IPR013845Small ribosomal subunit protein eS4, central regionDomain
ZA [auth F]IPR000876Small ribosomal subunit protein eS4Family
ZA [auth F]IPR014722Large ribosomal subunit protein uL2, domain 2Homologous Superfamily
ZA [auth F]IPR038237Small ribosomal subunit protein eS4, central domain superfamilyHomologous Superfamily
ZA [auth F]IPR041982Small ribosomal subunit protein eS4, KOW domainDomain
ZA [auth F]IPR036986RNA-binding S4 domain superfamilyHomologous Superfamily
ZA [auth F]IPR005824KOWDomain
AB [auth G]IPR020606Small ribosomal subunit protein uS7, conserved siteConserved Site
AB [auth G]IPR036823Small ribosomal subunit protein uS7 domain superfamilyHomologous Superfamily
AB [auth G]IPR000235Small ribosomal subunit protein uS7Family
AB [auth G]IPR023798Small ribosomal subunit protein uS7 domainDomain
AB [auth G]IPR005716Ribosomal protein uS7, eukaryotic/archaealFamily
BB [auth H]IPR014401Small ribosomal subunit protein eS6-likeFamily
BB [auth H]IPR001377Small ribosomal subunit protein eS6Family
BB [auth H]IPR018282Small ribosomal subunit protein eS6, conserved siteConserved Site
CB [auth I]IPR000554Small ribosomal subunit protein eS7Family
CB [auth I]IPR047861Small ribosomal subunit protein eS7, conserved siteConserved Site
DB [auth J]IPR001047Small ribosomal subunit protein eS8Family
DB [auth J]IPR042563Small ribosomal subunit protein eS8 subdomain, eukaryotesHomologous Superfamily
DB [auth J]IPR022309Ribosomal protein eS8/ribosomal biogenesis NSA2Family
DB [auth J]IPR018283Small ribosomal subunit protein eS8, conserved siteConserved Site
EB [auth K]IPR018079Small ribosomal subunit protein uS4, conserved siteConserved Site
EB [auth K]IPR002942RNA-binding S4 domainDomain
EB [auth K]IPR001912Small ribosomal subunit protein uS4, N-terminalDomain
EB [auth K]IPR005710Small ribosomal subunit protein uS4, eukaryotic/archaealFamily
EB [auth K]IPR036986RNA-binding S4 domain superfamilyHomologous Superfamily
EB [auth K]IPR022801Small ribosomal subunit protein uS4Family
FB [auth L]IPR037447Small ribosomal subunit protein eS10Family
FB [auth L]IPR036388Winged helix-like DNA-binding domain superfamilyHomologous Superfamily
FB [auth L]IPR005326Plectin/eS10, N-terminalDomain
GB [auth M]IPR019979Small ribosomal subunit protein uS17, conserved siteConserved Site
GB [auth M]IPR012340Nucleic acid-binding, OB-foldHomologous Superfamily
GB [auth M]IPR000266Small ribosomal subunit protein uS17Family
GB [auth M]IPR032440Small ribosomal subunit protein uS17, N-terminalDomain
GB [auth M]IPR028333Small ribosomal subunit protein uS17, archaeal/eukaryoticFamily
F [auth k]IPR019926Large ribosomal subunit protein uL3, conserved siteConserved Site
F [auth k]IPR045077Large ribosomal subunit protein uL3, archaeal/eukaryotic-typeFamily
F [auth k]IPR044892Ribosomal protein L3, domain 3, archaeal-type superfamilyHomologous Superfamily
F [auth k]IPR000597Large ribosomal subunit protein uL3Family
F [auth k]IPR009000Translation protein, beta-barrel domain superfamilyHomologous Superfamily
HB [auth N]IPR000530Small ribosomal subunit protein eS12Family
HB [auth N]IPR004038Ribosomal protein eL8/eL30/eS12/Gadd45Domain
HB [auth N]IPR029064Ribosomal protein eL30-like superfamilyHomologous Superfamily
HB [auth N]IPR047860Small ribosomal subunit protein eS12, conserved siteConserved Site
IB [auth O]IPR012606Small ribosomal subunit protein uS15, N-terminalDomain
IB [auth O]IPR009068uS15/NS1, RNA-binding domain superfamilyHomologous Superfamily
IB [auth O]IPR023029Small ribosomal subunit protein uS15, archaea/eukaryotesFamily
IB [auth O]IPR000589Small ribosomal subunit protein uS15Family
JB [auth P]IPR001971Small ribosomal subunit protein uS11Family
JB [auth P]IPR036967Small ribosomal subunit protein uS11 superfamilyHomologous Superfamily
JB [auth P]IPR018102Small ribosomal subunit protein uS11, conserved siteConserved Site
KB [auth Q]IPR002222Small ribosomal subunit protein uS19Family
KB [auth Q]IPR023575Small ribosomal subunit protein uS19, superfamilyHomologous Superfamily
KB [auth Q]IPR020934Small ribosomal subunit protein uS19, conserved siteConserved Site
KB [auth Q]IPR005713Small ribosomal subunit protein uS19, eukaryotic/archaealFamily
LB [auth R]IPR020574Small ribosomal subunit protein uS9, conserved siteConserved Site
LB [auth R]IPR020568Ribosomal protein uS5 domain 2-type superfamilyHomologous Superfamily
LB [auth R]IPR000754Small ribosomal subunit protein uS9Family
LB [auth R]IPR014721Small ribosomal subunit protein uS5 domain 2-type fold, subgroupHomologous Superfamily
MB [auth S]IPR036401Small ribosomal subunit protein eS17 superfamilyHomologous Superfamily
MB [auth S]IPR001210Small ribosomal subunit protein eS17Family
MB [auth S]IPR018273Small ribosomal subunit protein eS17, conserved siteConserved Site
NB [auth T]IPR027437Small ribosomal subunit protein uS13, C-terminalHomologous Superfamily
NB [auth T]IPR001892Small ribosomal subunit protein uS13Family
NB [auth T]IPR018269Small ribosomal subunit protein uS13, conserved siteConserved Site
NB [auth T]IPR010979Small ribosomal subunit protein uS13-like, H2THHomologous Superfamily
OB [auth U]IPR001266Small ribosomal subunit protein eS19Family
OB [auth U]IPR036388Winged helix-like DNA-binding domain superfamilyHomologous Superfamily
OB [auth U]IPR036390Winged helix DNA-binding domain superfamilyHomologous Superfamily
PB [auth V]IPR001848Small ribosomal subunit protein uS10Family
PB [auth V]IPR027486Small ribosomal subunit protein uS10 domainDomain
PB [auth V]IPR036838Small ribosomal subunit protein uS10 domain superfamilyHomologous Superfamily
PB [auth V]IPR005729Small ribosomal subunit protein uS10, eukaryotic/archaealFamily
PB [auth V]IPR018268Small ribosomal subunit protein uS10, conserved siteConserved Site
QB [auth W]IPR038579Small ribosomal subunit protein eS21 superfamilyHomologous Superfamily
QB [auth W]IPR018279Small ribosomal subunit protein eS21, conserved siteConserved Site
QB [auth W]IPR001931Small ribosomal subunit protein eS21Family
G [auth l]IPR025755Large ribosomal subunit protein uL4, C-terminal domainDomain
G [auth l]IPR002136Large ribosomal subunit protein uL4Family
G [auth l]IPR013000Large ribosomal subunit protein uL4, eukaryotic/archaeal, conserved siteConserved Site
G [auth l]IPR045240Large ribosomal subunit protein uL4, eukaryotic and archaeal typeFamily
G [auth l]IPR023574Large ribosomal subunit protein uL4 domain superfamilyHomologous Superfamily
RB [auth X]IPR000630Small ribosomal subunit protein uS8Family
RB [auth X]IPR047863Small ribosomal subunit protein uS8, conserved siteConserved Site
RB [auth X]IPR035987Small ribosomal subunit protein uS8 superfamilyHomologous Superfamily
SB [auth Y]IPR006032Small ribosomal subunit protein uS12Family
SB [auth Y]IPR012340Nucleic acid-binding, OB-foldHomologous Superfamily
SB [auth Y]IPR005680Small ribosomal subunit protein uS12, eukaryotic/archaealFamily
TB [auth Z]IPR001976Small ribosomal subunit protein eS24Family
TB [auth Z]IPR012678Ribosomal protein uL23/eL15/eS24 core domain superfamilyHomologous Superfamily
TB [auth Z]IPR018098Small ribosomal subunit protein eS24 conserved siteConserved Site
UB [auth a]IPR004977Small ribosomal subunit protein eS25Family
UB [auth a]IPR036390Winged helix DNA-binding domain superfamilyHomologous Superfamily
VB [auth b]IPR038551Ribosomal protein eS26 superfamilyHomologous Superfamily
VB [auth b]IPR000892Small ribosomal subunit protein eS26Family
VB [auth b]IPR047864Ribosomal protein eS26, conserved siteConserved Site
WB [auth c]IPR023407Small ribosomal subunit protein eS27, zinc-binding domain superfamilyHomologous Superfamily
WB [auth c]IPR000592Small ribosomal subunit protein eS27Family
WB [auth c]IPR011332Zinc-binding ribosomal proteinHomologous Superfamily
XB [auth d]IPR028626Ribosomal protein eS28 conserved siteConserved Site
XB [auth d]IPR012340Nucleic acid-binding, OB-foldHomologous Superfamily
XB [auth d]IPR000289Small ribosomal subunit protein eS28Family
YB [auth e]IPR001209Small ribosomal subunit protein uS14Family
YB [auth e]IPR018271Small ribosomal subunit protein uS14, conserved siteConserved Site
YB [auth e]IPR039744Small ribosomal subunit protein uS14, eukaryotes/archaeaFamily
YB [auth e]IPR043140Small ribosomal subunit protein uS14 superfamilyHomologous Superfamily
ZB [auth f]IPR006846Small ribosomal subunit protein eS30Family
AC [auth g]IPR019954Ubiquitin conserved siteConserved Site
AC [auth g]IPR000626Ubiquitin-like domainDomain
AC [auth g]IPR038582Small ribosomal subunit protein eS31 eukaryotic-type superfamilyHomologous Superfamily
AC [auth g]IPR002906Small ribosomal subunit protein eS31Domain
AC [auth g]IPR019956Ubiquitin domainDomain
AC [auth g]IPR029071Ubiquitin-like domain superfamilyHomologous Superfamily
AC [auth g]IPR011332Zinc-binding ribosomal proteinHomologous Superfamily
H [auth m]IPR005485Large ribosomal subunit protein uL18 eukaryotic/archaealFamily
H [auth m]IPR025607Large ribosomal subunit protein uL18, C-terminal, eukaryotesDomain
BC [auth h]IPR019775WD40 repeat, conserved siteConserved Site
BC [auth h]IPR015943WD40/YVTN repeat-like-containing domain superfamilyHomologous Superfamily
BC [auth h]IPR036322WD40-repeat-containing domain superfamilyHomologous Superfamily
BC [auth h]IPR045223Small ribosomal subunit protein RACK1-likeFamily
BC [auth h]IPR001680WD40 repeatRepeat
BC [auth h]IPR020472G-protein beta WD-40 repeatRepeat
I [auth n]IPR049633Large ribosomal subunit protein eL6, conserved siteConserved Site
I [auth n]IPR014722Large ribosomal subunit protein uL2, domain 2Homologous Superfamily
I [auth n]IPR041997Large ribosomal subunit protein eL6, KOW domainDomain
I [auth n]IPR008991Translation protein SH3-like domain superfamilyHomologous Superfamily
I [auth n]IPR000915Large ribosomal subunit protein eL6Family

Protein Modification Annotation

Modified Residue(s)
ChainResidue(s)Description
A [auth 1]OMC Parent Component: C

A [auth 1]OMG Parent Component: G

Y [auth 6]MLZ Parent Component: LYS

RESIDAA0076

PSI-MOD :  N6-methyl-L-lysine MOD:00085
RA [auth AP]MLZ Parent Component: LYS

RESIDAA0076 , AA0076

PSI-MOD :  N6-methyl-L-lysine MOD:00085 , N6-methyl-L-lysine MOD:00085
JB [auth P]IAS RESIDAA0076 , AA0076