7PAA

JC polyomavirus VP1 in complex with scFv 29B1

External Resource: Annotation

Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
B [auth AAA]	SCOP2B Superfamily	Group I dsDNA viruses	8081603	3000939	SCOP2B (2022-06-29)
C [auth BBB]	SCOP2B Superfamily	Group I dsDNA viruses	8081603	3000939	SCOP2B (2022-06-29)
D [auth CCC]	SCOP2B Superfamily	Group I dsDNA viruses	8081603	3000939	SCOP2B (2022-06-29)
E [auth DDD]	SCOP2B Superfamily	Group I dsDNA viruses	8081603	3000939	SCOP2B (2022-06-29)
G [auth FFF]	SCOP2B Superfamily	Group I dsDNA viruses	8081603	3000939	SCOP2B (2022-06-29)
H [auth GGG]	SCOP2B Superfamily	Group I dsDNA viruses	8081603	3000939	SCOP2B (2022-06-29)
I [auth HHH]	SCOP2B Superfamily	Group I dsDNA viruses	8081603	3000939	SCOP2B (2022-06-29)
J [auth III]	SCOP2B Superfamily	Group I dsDNA viruses	8081603	3000939	SCOP2B (2022-06-29)
K [auth JJJ]	SCOP2B Superfamily	Group I dsDNA viruses	8081603	3000939	SCOP2B (2022-06-29)
F [auth EEE]	SCOP2B Superfamily	Group I dsDNA viruses	8081603	3000939	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
O [auth ccc]	PF07686	e7paaccc1	A: beta sandwiches	X: Immunoglobulin-like beta-sandwich	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: PF07686	ECOD (1.6)
Q [auth eee]	PF07686	e7paaeee2	A: beta sandwiches	X: Immunoglobulin-like beta-sandwich	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: PF07686	ECOD (1.6)
R [auth WWW]	PF07686	e7paaWWW1	A: beta sandwiches	X: Immunoglobulin-like beta-sandwich	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: PF07686	ECOD (1.6)
S [auth XXX]	PF07686	e7paaXXX2	A: beta sandwiches	X: Immunoglobulin-like beta-sandwich	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: PF07686	ECOD (1.6)
T [auth YYY]	PF07686	e7paaYYY2	A: beta sandwiches	X: Immunoglobulin-like beta-sandwich	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: PF07686	ECOD (1.6)
M [auth aaa]	PF07686	e7paaaaa2	A: beta sandwiches	X: Immunoglobulin-like beta-sandwich	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: PF07686	ECOD (1.6)
P [auth ddd]	PF07686	e7paaddd1	A: beta sandwiches	X: Immunoglobulin-like beta-sandwich	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: PF07686	ECOD (1.6)
B [auth AAA]	PF00718	e7paaAAA1	A: beta sandwiches	X: jelly-roll	H: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology)	T: Nucleoplasmin-like/VP (viral coat and capsid proteins)	F: PF00718	ECOD (1.6)
C [auth BBB]	PF00718	e7paaBBB1	A: beta sandwiches	X: jelly-roll	H: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology)	T: Nucleoplasmin-like/VP (viral coat and capsid proteins)	F: PF00718	ECOD (1.6)
D [auth CCC]	PF00718	e7paaCCC1	A: beta sandwiches	X: jelly-roll	H: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology)	T: Nucleoplasmin-like/VP (viral coat and capsid proteins)	F: PF00718	ECOD (1.6)
E [auth DDD]	PF00718	e7paaDDD1	A: beta sandwiches	X: jelly-roll	H: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology)	T: Nucleoplasmin-like/VP (viral coat and capsid proteins)	F: PF00718	ECOD (1.6)
G [auth FFF]	PF00718	e7paaFFF1	A: beta sandwiches	X: jelly-roll	H: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology)	T: Nucleoplasmin-like/VP (viral coat and capsid proteins)	F: PF00718	ECOD (1.6)
H [auth GGG]	PF00718	e7paaGGG1	A: beta sandwiches	X: jelly-roll	H: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology)	T: Nucleoplasmin-like/VP (viral coat and capsid proteins)	F: PF00718	ECOD (1.6)
I [auth HHH]	PF00718	e7paaHHH1	A: beta sandwiches	X: jelly-roll	H: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology)	T: Nucleoplasmin-like/VP (viral coat and capsid proteins)	F: PF00718	ECOD (1.6)
J [auth III]	PF00718	e7paaIII1	A: beta sandwiches	X: jelly-roll	H: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology)	T: Nucleoplasmin-like/VP (viral coat and capsid proteins)	F: PF00718	ECOD (1.6)
K [auth JJJ]	PF00718	e7paaJJJ1	A: beta sandwiches	X: jelly-roll	H: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology)	T: Nucleoplasmin-like/VP (viral coat and capsid proteins)	F: PF00718	ECOD (1.6)
F [auth EEE]	PF00718	e7paaEEE1	A: beta sandwiches	X: jelly-roll	H: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology)	T: Nucleoplasmin-like/VP (viral coat and capsid proteins)	F: PF00718	ECOD (1.6)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
B [auth AAA], C [auth BBB], D [auth CCC], E [auth DDD], F [auth EEE], B [auth AAA], C [auth BBB], D [auth CCC], E [auth DDD], F [auth EEE], G [auth FFF], H [auth GGG], I [auth HHH], J [auth III], K [auth JJJ]	PF00718	Polyomavirus coat protein (Polyoma_coat)	Polyomavirus coat protein	-	Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A [auth ZZZ], L [auth KKK], M [auth aaa], N [auth bbb], O [auth ccc], A [auth ZZZ], L [auth KKK], M [auth aaa], N [auth bbb], O [auth ccc], P [auth ddd], Q [auth eee], R [auth WWW], S [auth XXX], T [auth YYY]	scFv 29B1	-	-	-
B [auth AAA], C [auth BBB], D [auth CCC], E [auth DDD], F [auth EEE], B [auth AAA], C [auth BBB], D [auth CCC], E [auth DDD], F [auth EEE], G [auth FFF], H [auth GGG], I [auth HHH], J [auth III], K [auth JJJ]	Major capsid protein VP1	structural molecule activity	import into cell receptor-mediated endocytosis of virus by host cell biological process involved in interspecies interaction between organisms transport viral life cycle establishment of localization vesicle-mediated transport biological process involved in interaction with host biological process involved in symbiotic interaction localization symbiont entry into host cell clathrin-dependent endocytosis viral process symbiont entry into host import into cell receptor-mediated endocytosis of virus by host cell biological process involved in interspecies interaction between organisms transport viral life cycle establishment of localization vesicle-mediated transport biological process involved in interaction with host biological process involved in symbiotic interaction localization symbiont entry into host cell clathrin-dependent endocytosis viral process symbiont entry into host cellular process clathrin-dependent endocytosis of virus by host cell receptor-mediated endocytosis endocytosis endocytosis involved in viral entry into host cell transport of virus virion attachment to host cell adhesion of symbiont to host cell adhesion of symbiont to host	viral capsid icosahedral viral capsid T=7 icosahedral viral capsid virion component host intracellular membrane-bounded organelle host cellular component host intracellular part host cell part host intracellular region cellular anatomical entity host cell nucleus host intracellular organelle

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
B [auth AAA], C [auth BBB], D [auth CCC], E [auth DDD], F [auth EEE], B [auth AAA], C [auth BBB], D [auth CCC], E [auth DDD], F [auth EEE], G [auth FFF], H [auth GGG], I [auth HHH], J [auth III], K [auth JJJ]	IPR011222	Double-stranded DNA virus, group I, capsid	Homologous Superfamily
B [auth AAA], C [auth BBB], D [auth CCC], E [auth DDD], F [auth EEE], B [auth AAA], C [auth BBB], D [auth CCC], E [auth DDD], F [auth EEE], G [auth FFF], H [auth GGG], I [auth HHH], J [auth III], K [auth JJJ]	IPR000662	Capsid protein VP1,Polyomavirus	Family
B [auth AAA], C [auth BBB], D [auth CCC], E [auth DDD], F [auth EEE], B [auth AAA], C [auth BBB], D [auth CCC], E [auth DDD], F [auth EEE], G [auth FFF], H [auth GGG], I [auth HHH], J [auth III], K [auth JJJ]	IPR036931	Polyomavirus capsid protein VP1 superfamily	Homologous Superfamily

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM133198.