Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
A [auth D]SCOP2B SuperfamilyAlpha-L RNA-binding motif8083400 3001473 SCOP2B (2022-06-29)
B [auth F]SCOP2B SuperfamilyRibosomal protein S68066495 3001323 SCOP2B (2022-06-29)
C [auth H]SCOP2B SuperfamilyRibosomal protein S88079059 3000709 SCOP2B (2022-06-29)
D [auth K]SCOP2B SuperfamilyTranslational machinery components8035368 3000571 SCOP2B (2022-06-29)
E [auth L]SCOP2B SuperfamilyNucleic acid-binding proteins8106545 3000135 SCOP2B (2022-06-29)
F [auth O]SCOP2B SuperfamilyS15/NS1 RNA-binding domain8032375 3001284 SCOP2B (2022-06-29)
G [auth P]SCOP2B SuperfamilyRibosomal protein S168106547 3000680 SCOP2B (2022-06-29)
H [auth Q]SCOP2B SuperfamilyNucleic acid-binding proteins8059276 3000135 SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
A [auth D]PF00163,PF01479e7oi0D1 A: a+b two layersX: beta-GraspH: Ubiquitin-relatedT: Alpha-L RNA-binding motifF: PF00163,PF01479ECOD (1.6)
J [auth T]PF01649e7oi0T1 A: alpha bundlesX: Spectrin repeat-likeH: Ribosomal protein S20 (From Topology)T: Ribosomal protein S20F: PF01649ECOD (1.6)
B [auth F]PF01250e7oi0F1 A: a+b two layersX: Alpha-beta plaitsH: Ribosomal protein S6 (From Topology)T: Ribosomal protein S6F: PF01250ECOD (1.6)
C [auth H]PF00410e7oi0H2 A: a+b two layersX: R3H domain-likeH: Ribosomal protein S8, N-terminal domain (From Topology)T: Ribosomal protein S8, N-terminal domainF: PF00410ECOD (1.6)
C [auth H]PF00410e7oi0H1 A: a+b two layersX: Ribosomal protein S8, C-terminal domain (From Topology)H: Ribosomal protein S8, C-terminal domain (From Topology)T: Ribosomal protein S8, C-terminal domainF: PF00410ECOD (1.6)
D [auth K]PF00411e7oi0K1 A: mixed a+b and a/bX: Ribonuclease H-likeH: Ribonuclease H-like (From Topology)T: Ribonuclease H-likeF: PF00411ECOD (1.6)
E [auth L]PF00164e7oi0L1 A: beta barrelsX: OB-foldH: Nucleic acid-binding proteins (From Topology)T: Nucleic acid-binding proteinsF: PF00164ECOD (1.6)
F [auth O]PF00312e7oi0O1 A: alpha arraysX: S15/NS1 RNA-binding domain (From Topology)H: S15/NS1 RNA-binding domain (From Topology)T: S15/NS1 RNA-binding domainF: PF00312ECOD (1.6)
G [auth P]PF00886e7oi0P1 A: a+b two layersX: Ribosomal protein S16 (From Topology)H: Ribosomal protein S16 (From Topology)T: Ribosomal protein S16F: PF00886ECOD (1.6)
H [auth Q]PF00366e7oi0Q1 A: beta barrelsX: OB-foldH: Nucleic acid-binding proteins (From Topology)T: Nucleic acid-binding proteinsF: PF00366ECOD (1.6)
I [auth R]PF01084e7oi0R1 A: alpha arraysX: HTHH: HTHT: tri-helicalF: PF01084ECOD (1.6)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
A [auth D]PF00163Ribosomal protein S4/S9 N-terminal domain (Ribosomal_S4)Ribosomal protein S4/S9 N-terminal domain- Family
A [auth D]PF01479S4 domain (S4)S4 domainThe S4 domain is a small domain consisting of 60-65 amino acid residues that was detected in the bacterial ribosomal protein S4, eukaryotic ribosomal S9, two families of pseudouridine synthases, a novel family of predicted RNA methylases, a yeast pro ...The S4 domain is a small domain consisting of 60-65 amino acid residues that was detected in the bacterial ribosomal protein S4, eukaryotic ribosomal S9, two families of pseudouridine synthases, a novel family of predicted RNA methylases, a yeast protein containing a pseudouridine synthetase and a deaminase domain, bacterial tyrosyl-tRNA synthetases, and a number of uncharacterized, small proteins that may be involved in translation regulation [1]. The S4 domain probably mediates binding to RNA.
Domain
J [auth T]PF01649Ribosomal protein S20 (Ribosomal_S20p)Ribosomal protein S20- Family
B [auth F]PF01250Ribosomal protein S6 (Ribosomal_S6)Ribosomal protein S6- Domain
C [auth H]PF00410Ribosomal protein S8 (Ribosomal_S8)Ribosomal protein S8- Domain
D [auth K]PF00411Ribosomal protein S11 (Ribosomal_S11)Ribosomal protein S11- Family
E [auth L]PF00164Ribosomal protein S12/S23 (Ribosom_S12_S23)Ribosomal protein S12/S23- Family
F [auth O]PF00312Ribosomal protein S15 (Ribosomal_S15)Ribosomal protein S15- Domain
G [auth P]PF00886Ribosomal protein S16 (Ribosomal_S16)Ribosomal protein S16- Family
H [auth Q]PF00366Ribosomal protein S17 (Ribosomal_S17)Ribosomal protein S17- Domain
I [auth R]PF01084Ribosomal protein S18 (Ribosomal_S18)Ribosomal protein S18- Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
A [auth D]30S ribosomal protein S4
J [auth T]30S ribosomal protein S20
K [auth A]16S rRNA---
B [auth F]30S ribosomal protein S6, fully modified isoform
C [auth H]30S ribosomal protein S8
D [auth K]30S ribosomal protein S11
E [auth L]30S ribosomal protein S12
F [auth O]30S ribosomal protein S15
G [auth P]30S ribosomal protein S16
H [auth Q]30S ribosomal protein S17
I [auth R]30S ribosomal protein S18

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
A [auth D]IPR002942RNA-binding S4 domainDomain
A [auth D]IPR005709Small ribosomal subunit protein uS4, bacterial-typeFamily
A [auth D]IPR022801Small ribosomal subunit protein uS4Family
A [auth D]IPR018079Small ribosomal subunit protein uS4, conserved siteConserved Site
A [auth D]IPR001912Small ribosomal subunit protein uS4, N-terminalDomain
A [auth D]IPR036986RNA-binding S4 domain superfamilyHomologous Superfamily
J [auth T]IPR036510Small ribosomal subunit protein bS20 superfamilyHomologous Superfamily
J [auth T]IPR002583Small ribosomal subunit protein bS20Family
B [auth F]IPR020815Small ribosomal subunit protein bS6, conserved siteConserved Site
B [auth F]IPR000529Small ribosomal subunit protein bS6Family
B [auth F]IPR020814Small ribosomal subunit protein bS6, plastid/chloroplastFamily
B [auth F]IPR035980Small ribosomal subunit protein bS6 superfamilyHomologous Superfamily
B [auth F]IPR014717Translation elongation factor EF1B/small ribosomal subunit protein bS6Homologous Superfamily
C [auth H]IPR000630Small ribosomal subunit protein uS8Family
C [auth H]IPR047863Small ribosomal subunit protein uS8, conserved siteConserved Site
C [auth H]IPR035987Small ribosomal subunit protein uS8 superfamilyHomologous Superfamily
D [auth K]IPR001971Small ribosomal subunit protein uS11Family
D [auth K]IPR019981Small ribosomal subunit protein uS11, bacterial-typeFamily
D [auth K]IPR036967Small ribosomal subunit protein uS11 superfamilyHomologous Superfamily
D [auth K]IPR018102Small ribosomal subunit protein uS11, conserved siteConserved Site
E [auth L]IPR005679Ribosomal protein uS12, bacterial-typeFamily
E [auth L]IPR006032Small ribosomal subunit protein uS12Family
E [auth L]IPR012340Nucleic acid-binding, OB-foldHomologous Superfamily
F [auth O]IPR009068uS15/NS1, RNA-binding domain superfamilyHomologous Superfamily
F [auth O]IPR000589Small ribosomal subunit protein uS15Family
F [auth O]IPR005290Small ribosomal subunit protein uS15, bacterial-typeFamily
G [auth P]IPR023803Small ribosomal subunit protein bS16 domain superfamilyHomologous Superfamily
G [auth P]IPR000307Small ribosomal subunit protein bS16Family
G [auth P]IPR020592Small ribosomal subunit protein bS16, conserved siteConserved Site
H [auth Q]IPR019979Small ribosomal subunit protein uS17, conserved siteConserved Site
H [auth Q]IPR019984Small ribosomal subunit protein uS17, bacteria/chloroplastFamily
H [auth Q]IPR012340Nucleic acid-binding, OB-foldHomologous Superfamily
H [auth Q]IPR000266Small ribosomal subunit protein uS17Family
I [auth R]IPR001648Small ribosomal subunit protein bS18Family
I [auth R]IPR018275Small ribosomal subunit protein bS18, conserved siteConserved Site
I [auth R]IPR036870Small ribosomal subunit protein bS18 superfamilyHomologous Superfamily