7OHU

Nog1-TAP associated immature ribosomal particles from S. cerevisiae after rpL2 expression shut down, population B


Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
C [auth B]SCOP2B SuperfamilyTranslational proteins8078363 3000811 SCOP2B (2022-06-29)
D [auth C]SCOP2B SuperfamilyRibosomal protein L48052816 3001146 SCOP2B (2022-06-29)
D [auth C]SCOP2B Superfamily60S ribosomal protein L4 C-terminal domain-like8052815 3002143 SCOP2B (2022-06-29)
ESCOP2B SuperfamilyTranslation proteins SH3-like KOW motif containing domain8053109 3000334 SCOP2B (2022-06-29)
FSCOP2B SuperfamilyRibosomal L30p/L7e protein N-terminal domain-lke8052916 3002152 SCOP2B (2022-06-29)
FSCOP2B SuperfamilyRibosomal protein L30p/L7e8052917 3001378 SCOP2B (2022-06-29)
GSCOP2B SuperfamilyL30e-like8063962 3001739 SCOP2B (2022-06-29)
K [auth N]SCOP2B SuperfamilyRibosomal proteins S24e L23 and L15e8082481 3000210 SCOP2B (2022-06-29)
L [auth O]SCOP2B SuperfamilyRibosomal protein L138066053 3001134 SCOP2B (2022-06-29)
N [auth Q]SCOP2B SuperfamilyRibosomal proteins L15p and L18e8095970 3001045 SCOP2B (2022-06-29)
P [auth V]SCOP2B Superfamily50S Ribosomal protein L14-like8103364 3000433 SCOP2B (2022-06-29)
R [auth Y]SCOP2B SuperfamilyTranslation proteins SH3-like KOW motif containing domain8076760 3000334 SCOP2B (2022-06-29)
U [auth f]SCOP2B SuperfamilyTranslational proteins8087451 3000811 SCOP2B (2022-06-29)
W [auth i]SCOP2B SuperfamilyRibosomal protein L36e8053115 3002161 SCOP2B (2022-06-29)
AA [auth y]SCOP2B SuperfamilyPentein8036230 3000640 SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
C [auth B]Ribosomal_L3e7ohuB1 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: Alanine racemase-CF: Ribosomal_L3ECOD (1.6)
D [auth C]Ribosomal_L4e7ohuC1 A: a/b three-layered sandwichesX: Ribosomal protein L4 (From Topology)H: Ribosomal protein L4 (From Topology)T: Ribosomal protein L4F: Ribosomal_L4ECOD (1.6)
D [auth C]Ribos_L4_asso_Ce7ohuC2 A: extended segmentsX: C-terminal helical region in 60S ribosomal protein L4 (L4p) (From Topology)H: C-terminal helical region in 60S ribosomal protein L4 (L4p) (From Topology)T: C-terminal helical region in 60S ribosomal protein L4 (L4p)F: Ribos_L4_asso_CECOD (1.6)
ERibosomal_L6ee7ohuE1 A: beta barrelsX: SH3H: SH3T: SH3F: Ribosomal_L6eECOD (1.6)
FRibosomal_L30_1e7ohuF1 A: a+b two layersX: Ribosomal protein L30p/L7e (From Topology)H: Ribosomal protein L30p/L7e (From Topology)T: Ribosomal protein L30p/L7eF: Ribosomal_L30_1ECOD (1.6)
GRibosomal_L7Ae_1e7ohuG1 A: a+b three layersX: Bacillus chorismate mutase-likeH: L30e-like (From Topology)T: L30e-likeF: Ribosomal_L7Ae_1ECOD (1.6)
HRibosomal_L6_2e7ohuH1 A: a+b two layersX: Ribosomal protein L6 (From Topology)H: Ribosomal protein L6 (From Topology)T: Ribosomal protein L6F: Ribosomal_L6_2ECOD (1.6)
HRibosomal_L6e7ohuH2 A: a+b two layersX: Ribosomal protein L6 (From Topology)H: Ribosomal protein L6 (From Topology)T: Ribosomal protein L6F: Ribosomal_L6ECOD (1.6)
I [auth L]Ribosomal_L13ee7ohuL1 A: extended segmentsX: RPL13 (From Topology)H: RPL13 (From Topology)T: RPL13F: Ribosomal_L13eECOD (1.6)
J [auth M]Ribosomal_L14ee7ohuM1 A: beta barrelsX: SH3H: SH3T: SH3F: Ribosomal_L14eECOD (1.6)
K [auth N]Ribosomal_L15ee7ohuN1 A: a+b two layersX: Alpha-beta plaitsH: Ribosomal proteins S24e, L23 and L15e (From Topology)T: Ribosomal proteins S24e, L23 and L15eF: Ribosomal_L15eECOD (1.6)
L [auth O]Ribosomal_L13e7ohuO1 A: a/b three-layered sandwichesX: Ribosomal protein L13/L15p/L18e/L32eH: Ribosomal protein L13 and L16-A (From Topology)T: Ribosomal protein L13 and L16-AF: Ribosomal_L13ECOD (1.6)
M [auth P]Ribosomal_L22e7ohuP1 A: a+b two layersX: Enolase-N/ribosomal proteinH: Ribosomal protein L22 (From Topology)T: Ribosomal protein L22F: Ribosomal_L22ECOD (1.6)
N [auth Q]Ribosomal_L18e7ohuQ1 A: a/b three-layered sandwichesX: Ribosomal protein L13/L15p/L18e/L32eH: Ribosomal proteins L15p and L18e (From Topology)T: Ribosomal proteins L15p and L18eF: Ribosomal_L18ECOD (1.6)
O [auth S]Ribosomal_L18Ae7ohuS2 A: a+b two layersX: GP2-likeH: RplX-like (From Topology)T: RplX-likeF: Ribosomal_L18AECOD (1.6)
P [auth V]Ribosomal_L14e7ohuV1 A: beta barrelsX: Ribosomal protein L14-likeH: Ribosomal protein L14-related (From Topology)T: Ribosomal protein L14-relatedF: Ribosomal_L14ECOD (1.6)
Q [auth W]Ribosomal_L10e7ohuW2 A: a+b two layersX: Alpha-beta plaitsH: Ribosomal protein L10-like (From Topology)T: Ribosomal protein L10-likeF: Ribosomal_L10ECOD (1.6)
Q [auth W]Ribosomal_P0_L10ee7ohuW1 A: a+b two layersX: Insertion domain in 60S ribosomal protein rpP0 (L10P) (From Topology)H: Insertion domain in 60S ribosomal protein rpP0 (L10P) (From Topology)T: Insertion domain in 60S ribosomal protein rpP0 (L10P)F: Ribosomal_P0_L10eECOD (1.6)
R [auth Y]Ribosomal_L26e7ohuY1 A: beta barrelsX: SH3H: SH3T: SH3F: Ribosomal_L26ECOD (1.6)
T [auth e]Ribosomal_L32ee7ohue1 A: a/b three-layered sandwichesX: Ribosomal protein L13/L15p/L18e/L32eH: Ribosomal protein L32e (From Topology)T: Ribosomal protein L32eF: Ribosomal_L32eECOD (1.6)
U [auth f]Ribosomal_L35Aee7ohuf1 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: Alanine racemase-CF: Ribosomal_L35AeECOD (1.6)
V [auth h]Ribosomal_L29_2e7ohuh1 A: alpha bundlesX: Long alpha-hairpinH: Ribosomal protein L29 (L29p) (From Topology)T: Ribosomal protein L29 (L29p)F: Ribosomal_L29_2ECOD (1.6)
W [auth i]Ribosomal_L36ee7ohui1 A: alpha arraysX: 60S ribosomal protein rpL36 (L36e) (From Topology)H: 60S ribosomal protein rpL36 (L36e) (From Topology)T: 60S ribosomal protein rpL36 (L36e)F: Ribosomal_L36eECOD (1.6)
X [auth j]Ribosomal_L37ee7ohuj1 A: few secondary structure elementsX: Rubredoxin-likeH: Rubredoxin-relatedT: Rubredoxin-relatedF: Ribosomal_L37eECOD (1.6)
AA [auth y]eIF-6e7ohuy1 A: a+b duplicates or obligate multimersX: Pentein (From Topology)H: Pentein (From Topology)T: PenteinF: eIF-6ECOD (1.6)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
C [auth B]PF00297Ribosomal protein L3 (Ribosomal_L3)Ribosomal protein L3- Family
D [auth C]PF1437460S ribosomal protein L4 C-terminal domain (Ribos_L4_asso_C)60S ribosomal protein L4 C-terminal domainThis family is found at the very C-terminal of 60 ribosomal L4 proteins.Domain
D [auth C]PF00573Ribosomal protein L4/L1 family (Ribosomal_L4)Ribosomal protein L4/L1 family- Family
PF01159Ribosomal protein L6e (Ribosomal_L6e)Ribosomal protein L6e- Family
PF08079Ribosomal L30 N-terminal domain (Ribosomal_L30_N)Ribosomal L30 N-terminal domainThis presumed domain is found at the N-terminus of Ribosomal L30 proteins and has been termed RL30NT or NUC018 [1].Domain
PF00327Ribosomal protein L30p/L7e (Ribosomal_L30)Ribosomal protein L30p/L7eThis family includes prokaryotic L30 and eukaryotic L7.Domain
PF00347Ribosomal protein L6 (Ribosomal_L6)Ribosomal protein L6- Domain
I [auth L]PF01294Ribosomal protein L13e (Ribosomal_L13e)Ribosomal protein L13e- Family
J [auth M]PF01929Ribosomal protein L14 (Ribosomal_L14e)Ribosomal protein L14- Family
J [auth M]PF00467KOW motif (KOW)KOW motif- Family
K [auth N]PF00827Ribosomal L15 (Ribosomal_L15e)Ribosomal L15- Family
L [auth O]PF00572Ribosomal protein L13 (Ribosomal_L13)Ribosomal protein L13- Family
M [auth P]PF00237Ribosomal protein L22p/L17e (Ribosomal_L22)Ribosomal protein L22p/L17eThis family includes L22 from prokaryotes and chloroplasts and L17 from eukaryotes.Domain
N [auth Q]PF17135Ribosomal protein 60S L18 and 50S L18e (Ribosomal_L18)Ribosomal protein 60S L18 and 50S L18e- Family
O [auth S]PF01775Ribosomal proteins 50S-L18Ae/60S-L20/60S-L18A (Ribosomal_L18A)Ribosomal proteins 50S-L18Ae/60S-L20/60S-L18AThis family includes: archaeal 50S ribosomal protein L18Ae, often referred to as L20e or LX; fungal 60S ribosomal protein L20; and higher eukaryote 60S ribosomal protein L18A.Domain
P [auth V]PF00238Ribosomal protein L14p/L23e (Ribosomal_L14)Ribosomal protein L14p/L23e- Domain
Q [auth W]PF17777Insertion domain in 60S ribosomal protein L10P (RL10P_insert)Insertion domain in 60S ribosomal protein L10PThis domain is found in prokaryotic and archaeal ribosomal L10 protein [1].Domain
Q [auth W]PF00466Ribosomal protein L10 (Ribosomal_L10)Ribosomal protein L10- Family
R [auth Y]PF16906Ribosomal proteins L26 eukaryotic, L24P archaeal (Ribosomal_L26)Ribosomal proteins L26 eukaryotic, L24P archaeal- Family
R [auth Y]PF00467KOW motif (KOW)KOW motif- Family
S [auth b]PF08155NOGCT (NUC087) domain (NOGCT)NOGCT (NUC087) domainThis C terminal domain is found in the NOG subfamily of nucleolar GTP-binding proteins [1].Domain
S [auth b]PF17835NOG1 N-terminal helical domain (NOG1_N)NOG1 N-terminal helical domainThis domain is found at the N-terminus of NOG1 GTPase proteins.Domain
T [auth e]PF01655Ribosomal protein L32 (Ribosomal_L32e)Ribosomal protein L32- Family
U [auth f]PF01247Ribosomal protein L35Ae (Ribosomal_L35Ae)Ribosomal protein L35Ae- Domain
V [auth h]PF00831Ribosomal L29 protein (Ribosomal_L29)Ribosomal L29 protein- Family
W [auth i]PF01158Ribosomal protein L36e (Ribosomal_L36e)Ribosomal protein L36e- Family
X [auth j]PF01907Ribosomal protein L37e (Ribosomal_L37e)Ribosomal protein L37e- Family
Y [auth r]PF01201Ribosomal protein S8e (Ribosomal_S8e)Ribosomal protein S8e- Family
Z [auth u]PF01246Ribosomal protein L24e (Ribosomal_L24e)Ribosomal protein L24e- Domain
AA [auth y]PF01912eIF-6 family (eIF-6)eIF-6 family- Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
A [auth 1]25S rRNA---
B [auth 2]5.8S rRNA---
C [auth B]60S ribosomal protein L3
D [auth C]60S ribosomal protein L4-A
60S ribosomal protein L6-A
60S ribosomal protein L7-A
60S ribosomal protein L8-A
60S ribosomal protein L9-A
I [auth L]60S ribosomal protein L13-A
J [auth M]60S ribosomal protein L14-A
K [auth N]60S ribosomal protein L15-A
L [auth O]60S ribosomal protein L16-A
M [auth P]60S ribosomal protein L17-A
N [auth Q]60S ribosomal protein L18-A
O [auth S]60S ribosomal protein L20-A
P [auth V]60S ribosomal protein L23-A
Q [auth W]Ribosome assembly factor MRT4
R [auth Y]60S ribosomal protein L26-A
S [auth b]Nucleolar GTP-binding protein 1
T [auth e]60S ribosomal protein L32
U [auth f]60S ribosomal protein L33-A
V [auth h]60S ribosomal protein L35-A
W [auth i]60S ribosomal protein L36-A
X [auth j]60S ribosomal protein L37-A
Y [auth r]Ribosome biogenesis protein NSA2-
Z [auth u]Ribosome biogenesis protein RLP24
AA [auth y]Eukaryotic translation initiation factor 6

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
C [auth B]IPR019926Large ribosomal subunit protein uL3, conserved siteConserved Site
C [auth B]IPR045077Large ribosomal subunit protein uL3, archaeal/eukaryotic-typeFamily
C [auth B]IPR044892Ribosomal protein L3, domain 3, archaeal-type superfamilyHomologous Superfamily
C [auth B]IPR000597Large ribosomal subunit protein uL3Family
C [auth B]IPR009000Translation protein, beta-barrel domain superfamilyHomologous Superfamily
D [auth C]IPR025755Large ribosomal subunit protein uL4, C-terminal domainDomain
D [auth C]IPR002136Large ribosomal subunit protein uL4Family
D [auth C]IPR013000Large ribosomal subunit protein uL4, eukaryotic/archaeal, conserved siteConserved Site
D [auth C]IPR045240Large ribosomal subunit protein uL4, eukaryotic and archaeal typeFamily
D [auth C]IPR023574Large ribosomal subunit protein uL4 domain superfamilyHomologous Superfamily
IPR049633Large ribosomal subunit protein eL6, conserved siteConserved Site
IPR014722Large ribosomal subunit protein uL2, domain 2Homologous Superfamily
IPR041997Large ribosomal subunit protein eL6, KOW domainDomain
IPR008991Translation protein SH3-like domain superfamilyHomologous Superfamily
IPR000915Large ribosomal subunit protein eL6Family
IPR035808Large ribosomal subunit protein uL30, eukaryotic/archaealDomain
IPR036919Large ribosomal subunit protein uL30, ferredoxin-like fold domain superfamilyHomologous Superfamily
IPR012988Large ribosomal subunit protein uL30, N-terminal, eukaryotesDomain
IPR039699Large ribosomal subunit protein uL30Family
IPR005998Large ribosomal subunit protein uL30, eukaryoticFamily
IPR016082Large ribosomal subunit protein uL30-like, ferredoxin-like fold domainDomain
IPR018038Large ribosomal subunit protein uL30, conserved siteConserved Site
IPR001921Large ribosomal subunit protein eL8Family
IPR004038Ribosomal protein eL8/eL30/eS12/Gadd45Domain
IPR004037Large ribosomal subunit protein eL8-like, conserved siteConserved Site
IPR029064Ribosomal protein eL30-like superfamilyHomologous Superfamily
IPR018492Ribosomal protein eL8/Nhp2 familyFamily
IPR020040Large ribosomal subunit protein uL6, alpha-beta domainDomain
IPR002359Large ribosomal subunit protein uL6, conserved site-2Conserved Site
IPR036789Large ribosomal subunit protein uL6-like, alpha-beta domain superfamilyHomologous Superfamily
IPR000702Large ribosomal subunit protein uL6-likeFamily
I [auth L]IPR001380Large ribosomal subunit protein eL13Family
I [auth L]IPR018256Large ribosomal subunit protein eL13, conserved siteConserved Site
J [auth M]IPR014722Large ribosomal subunit protein uL2, domain 2Homologous Superfamily
J [auth M]IPR008991Translation protein SH3-like domain superfamilyHomologous Superfamily
J [auth M]IPR039660Large ribosomal subunit protein eL14Family
J [auth M]IPR041985Large ribosomal subunit protein eL14, KOW motifDomain
J [auth M]IPR002784Large ribosomal subunit protein eL14 domainDomain
J [auth M]IPR005824KOWDomain
K [auth N]IPR012678Ribosomal protein uL23/eL15/eS24 core domain superfamilyHomologous Superfamily
K [auth N]IPR020925Large ribosomal subunit protein eL15, conserved siteConserved Site
K [auth N]IPR024794Large ribosomal subunit protein eL15 core domain superfamilyHomologous Superfamily
K [auth N]IPR000439Large ribosomal subunit protein eL15Family
L [auth O]IPR023563Large ribosomal subunit protein uL13, conserved siteConserved Site
L [auth O]IPR005822Large ribosomal subunit protein uL13Family
L [auth O]IPR036899Large ribosomal subunit protein uL13 superfamilyHomologous Superfamily
L [auth O]IPR005755Large ribosomal subunit protein uL13, eukaryotic/archaealFamily
M [auth P]IPR018260Large ribosomal subunit protein uL22, conserved siteConserved Site
M [auth P]IPR036394Ribosomal protein uL22 superfamilyHomologous Superfamily
M [auth P]IPR001063Large ribosomal subunit protein uL22Family
M [auth P]IPR005721Large ribosomal subunit protein uL22, eukaryotic/archaealFamily
N [auth Q]IPR021131Large ribosomal subunit protein uL15/eL18Domain
N [auth Q]IPR021132Large ribosomal subunit protein eL18, conserved siteConserved Site
N [auth Q]IPR000039Large ribosomal subunit protein eL18Family
N [auth Q]IPR036227Large ribosomal subunit protein uL15/eL18 superfamilyHomologous Superfamily
O [auth S]IPR028877Large ribosomal subunit protein eL20Family
O [auth S]IPR023573Large ribosomal subunit protein eL20 domainDomain
O [auth S]IPR021138Large ribosomal subunit protein eL20, eukaryotesFamily
P [auth V]IPR036853Large ribosomal subunit protein uL14 superfamilyHomologous Superfamily
P [auth V]IPR000218Large ribosomal subunit protein uL14Family
P [auth V]IPR019972Large ribosomal subunit protein uL14, conserved siteConserved Site
Q [auth W]IPR043141Large ribosomal subunit protein uL10-like domain superfamilyHomologous Superfamily
Q [auth W]IPR001790Large ribosomal subunit protein uL10Family
Q [auth W]IPR043164Large ribosomal subunit protein uL10-like, insertion domain superfamilyHomologous Superfamily
Q [auth W]IPR040637Large ribosomal subunit protein uL10-like, insertion domainDomain
Q [auth W]IPR033867Ribosome assembly factor Mrt4Family
R [auth Y]IPR041988Large ribosomal subunit protein uL24, KOW domainDomain
R [auth Y]IPR014722Large ribosomal subunit protein uL2, domain 2Homologous Superfamily
R [auth Y]IPR005824KOWDomain
R [auth Y]IPR008991Translation protein SH3-like domain superfamilyHomologous Superfamily
R [auth Y]IPR005756Large ribosomal subunit protein uL24, eukaryotic/archaealFamily
R [auth Y]IPR005825Large ribosomal subunit protein uL24, conserved siteConserved Site
S [auth b]IPR024926Nucleolar GTP-binding protein 1Family
S [auth b]IPR031167OBG-type guanine nucleotide-binding (G) domainDomain
S [auth b]IPR012973NOG, C-terminalDomain
S [auth b]IPR010674Nucleolar GTP-binding protein 1, Rossman-fold domainDomain
S [auth b]IPR041623NOG1, N-terminal helical domainDomain
S [auth b]IPR006073GTP binding domainDomain
S [auth b]IPR027417P-loop containing nucleoside triphosphate hydrolaseHomologous Superfamily
T [auth e]IPR036351Large ribosomal subunit protein eL32 superfamilyHomologous Superfamily
T [auth e]IPR001515Large ribosomal subunit protein eL32Family
T [auth e]IPR018263Large ribosomal subunit protein eL32, conserved siteConserved Site
U [auth f]IPR038661Large ribosomal subunit protein eL33 superfamilyHomologous Superfamily
U [auth f]IPR009000Translation protein, beta-barrel domain superfamilyHomologous Superfamily
U [auth f]IPR001780Large ribosomal subunit protein eL33Family
U [auth f]IPR018266Large ribosomal subunit protein eL33, conserved siteConserved Site
V [auth h]IPR045059Large ribosomal subunit protein uL29, eukaryotesFamily
V [auth h]IPR001854Large ribosomal subunit protein uL29Family
V [auth h]IPR036049Large ribosomal subunit protein uL29 superfamilyHomologous Superfamily
V [auth h]IPR018254Large ribosomal subunit protein uL29, conserved siteConserved Site
W [auth i]IPR000509Large ribosomal subunit protein eL36Family
W [auth i]IPR038097Large ribosomal subunit protein eL36 domain superfamilyHomologous Superfamily
X [auth j]IPR011331Large ribosomal subunit protein eL37/eL43Homologous Superfamily
X [auth j]IPR001569Large ribosomal subunit protein eL37Family
X [auth j]IPR018267Large ribosomal subunit protein eL37, conserved siteConserved Site
X [auth j]IPR011332Zinc-binding ribosomal proteinHomologous Superfamily
Y [auth r]IPR039411Ribosomal biogenesis NSA2 familyFamily
Y [auth r]IPR022309Ribosomal protein eS8/ribosomal biogenesis NSA2Family
Z [auth u]IPR011017TRASH domainDomain
Z [auth u]IPR000988Large ribosomal subunit protein eL24-relatedFamily
Z [auth u]IPR038630Ribosomal protein L24e/L24 superfamilyHomologous Superfamily
AA [auth y]IPR002769Translation initiation factor IF6Family