7L0L

Cryo-EM structure of the VRC316 clinical trial, vaccine-elicited, human antibody 316-310-1B11 in complex with an H2 CAN05 HA trimer


Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
B [auth A]SCOP2 FamilyInfluenza hemagglutinin headpiece8105853 4002506 SCOP2 (2022-06-29)
B [auth A]SCOP2 SuperfamilyInfluenza hemagglutinin domain-like8105854 3001342 SCOP2 (2022-06-29)
F [auth C]SCOP2B SuperfamilyInfluenza hemagglutinin domain-like8105854 3001342 SCOP2B (2022-06-29)
J [auth D]SCOP2B SuperfamilyInfluenza hemagglutinin domain-like8105854 3001342 SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
A [auth L]PF07686e7l0lL1 A: beta sandwichesX: Immunoglobulin-like beta-sandwichH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: PF07686ECOD (1.6)
E [auth J]PF07686e7l0lJ1 A: beta sandwichesX: Immunoglobulin-like beta-sandwichH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: PF07686ECOD (1.6)
I [auth K]PF07686e7l0lK1 A: beta sandwichesX: Immunoglobulin-like beta-sandwichH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: PF07686ECOD (1.6)
B [auth A]PF00509e7l0lA1 A: beta sandwichesX: jelly-rollH: Viral protein domain (From Topology)T: Viral protein domainF: PF00509ECOD (1.6)
F [auth C]PF00509e7l0lC1 A: beta sandwichesX: jelly-rollH: Viral protein domain (From Topology)T: Viral protein domainF: PF00509ECOD (1.6)
J [auth D]PF00509e7l0lD1 A: beta sandwichesX: jelly-rollH: Viral protein domain (From Topology)T: Viral protein domainF: PF00509ECOD (1.6)
C [auth B]PF00509e7l0lB1 A: alpha bundlesX: Hemagglutinin HA2 chain (From Topology)H: Hemagglutinin HA2 chain (From Topology)T: Hemagglutinin HA2 chainF: PF00509ECOD (1.6)
G [auth E]PF00509e7l0lE1 A: alpha bundlesX: Hemagglutinin HA2 chain (From Topology)H: Hemagglutinin HA2 chain (From Topology)T: Hemagglutinin HA2 chainF: PF00509ECOD (1.6)
K [auth F]PF00509e7l0lF1 A: alpha bundlesX: Hemagglutinin HA2 chain (From Topology)H: Hemagglutinin HA2 chain (From Topology)T: Hemagglutinin HA2 chainF: PF00509ECOD (1.6)
D [auth H]PF07686e7l0lH1 A: beta sandwichesX: Immunoglobulin-like beta-sandwichH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: PF07686ECOD (1.6)
H [auth G]PF07686e7l0lG1 A: beta sandwichesX: Immunoglobulin-like beta-sandwichH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: PF07686ECOD (1.6)
L [auth I]PF07686e7l0lI1 A: beta sandwichesX: Immunoglobulin-like beta-sandwichH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: PF07686ECOD (1.6)

SAbDab Antibody Annotation SAbDab Database Homepage

ChainChain ClassChain SubclassChain TypeAntigen Name(s) Provenance Source
A [auth L],
E [auth J],
I [auth K]
Light ChainIGKV3 Kappahemagglutinin ha2 chain | hemagglutinin ha1 chainSAbDab (2024-05-10)
D [auth H],
H [auth G],
L [auth I]
Heavy ChainIGHV1 -hemagglutinin ha2 chain | hemagglutinin ha1 chainSAbDab (2024-05-10)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
B [auth A],
F [auth C],
J [auth D]
PF00509Haemagglutinin (Hemagglutinin)Haemagglutinin- Family
C [auth B],
G [auth E],
K [auth F]
PF00509Haemagglutinin (Hemagglutinin)Haemagglutinin- Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
A [auth L],
E [auth J],
I [auth K]
316-310-1B11 Light Chain---
B [auth A],
F [auth C],
J [auth D]
Hemagglutinin HA1 chain
C [auth B],
G [auth E],
K [auth F]
Hemagglutinin HA2 chain
D [auth H],
H [auth G],
L [auth I]
316-310-1B11 Heavy Chain---