7KC1
Cryo-EM structure of SRR2899884.46167H+MEDI8852L fab in complex with Victoria HA
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
B | SCOP2B Superfamily | Influenza hemagglutinin (stalk) | 8088072 | 3001616 | SCOP2B (2022-06-29) |
F [auth D] | SCOP2B Superfamily | Influenza hemagglutinin (stalk) | 8088072 | 3001616 | SCOP2B (2022-06-29) |
J [auth I] | SCOP2B Superfamily | Influenza hemagglutinin (stalk) | 8088072 | 3001616 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | PF00509 | e7kc1A1 | A: beta sandwiches | X: jelly-roll | H: Viral protein domain (From Topology) | T: Viral protein domain | F: PF00509 | ECOD (1.6) |
E [auth C] | PF00509 | e7kc1C1 | A: beta sandwiches | X: jelly-roll | H: Viral protein domain (From Topology) | T: Viral protein domain | F: PF00509 | ECOD (1.6) |
I [auth G] | PF00509 | e7kc1G1 | A: beta sandwiches | X: jelly-roll | H: Viral protein domain (From Topology) | T: Viral protein domain | F: PF00509 | ECOD (1.6) |
B | PF00509 | e7kc1B1 | A: alpha bundles | X: Hemagglutinin HA2 chain (From Topology) | H: Hemagglutinin HA2 chain (From Topology) | T: Hemagglutinin HA2 chain | F: PF00509 | ECOD (1.6) |
F [auth D] | PF00509 | e7kc1D1 | A: alpha bundles | X: Hemagglutinin HA2 chain (From Topology) | H: Hemagglutinin HA2 chain (From Topology) | T: Hemagglutinin HA2 chain | F: PF00509 | ECOD (1.6) |
J [auth I] | PF00509 | e7kc1I1 | A: alpha bundles | X: Hemagglutinin HA2 chain (From Topology) | H: Hemagglutinin HA2 chain (From Topology) | T: Hemagglutinin HA2 chain | F: PF00509 | ECOD (1.6) |
D [auth L] | PF07686 | e7kc1L1 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: PF07686 | ECOD (1.6) |
H [auth F] | PF07686 | e7kc1F1 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: PF07686 | ECOD (1.6) |
L [auth K] | PF07686 | e7kc1K1 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: PF07686 | ECOD (1.6) |
G [auth E] | PF07686 | e7kc1E1 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: PF07686 | ECOD (1.6) |
K [auth J] | PF07686 | e7kc1J1 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: PF07686 | ECOD (1.6) |
C [auth H] | PF07686 | e7kc1H1 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: PF07686 | ECOD (1.6) |
SAbDab Antibody Annotation SAbDab Database Homepage
Chain | Chain Class | Chain Subclass | Chain Type | Antigen Name(s) | Provenance Source |
---|---|---|---|---|---|
D [auth L], H [auth F], L [auth K] | Light Chain | IGKV1 | Kappa | fusion protein of hemagglutinin and envelope glycoprotein | hemagglutinin | SAbDab (2024-05-03) |
C [auth H], G [auth E], K [auth J] | Heavy Chain | IGHV6 | - | fusion protein of hemagglutinin and envelope glycoprotein | hemagglutinin | SAbDab (2024-05-03) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
A, E [auth C], I [auth G] | PF00509 | Haemagglutinin (Hemagglutinin) | Haemagglutinin | - | Family |
B, F [auth D], J [auth I] | PF00509 | Haemagglutinin (Hemagglutinin) | Haemagglutinin | - | Family |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
A, E [auth C], I [auth G] | IPR001364 | Haemagglutinin, influenzavirus A/B | Family |
A, E [auth C], I [auth G] | IPR008980 | Viral capsid/haemagglutinin protein | Homologous Superfamily |
A, E [auth C], I [auth G] | IPR000149 | Haemagglutinin, influenzavirus A | Family |
A, E [auth C], I [auth G] | IPR013828 | Haemagglutinin, HA1 chain, alpha/beta domain superfamily | Homologous Superfamily |
B, F [auth D], J [auth I] | IPR001364 | Haemagglutinin, influenzavirus A/B | Family |
B, F [auth D], J [auth I] | IPR008980 | Viral capsid/haemagglutinin protein | Homologous Superfamily |
B, F [auth D], J [auth I] | IPR000149 | Haemagglutinin, influenzavirus A | Family |
B, F [auth D], J [auth I] | IPR013828 | Haemagglutinin, HA1 chain, alpha/beta domain superfamily | Homologous Superfamily |