7K23
Murine polyomavirus hexavalent capsomer with 8A7H5 Fab, subparticle reconstruction
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
C [auth A] | SCOP2B Superfamily | Group I dsDNA viruses | 8096612 | 3000939 | SCOP2B (2022-06-29) |
D [auth B] | SCOP2 Family | papovaviridae-like vp | 8096611 | 4003485 | SCOP2 (2022-06-29) |
D [auth B] | SCOP2 Superfamily | Group I dsDNA viruses | 8096612 | 3000939 | SCOP2 (2022-06-29) |
E [auth C] | SCOP2B Superfamily | Group I dsDNA viruses | 8096612 | 3000939 | SCOP2B (2022-06-29) |
F [auth D] | SCOP2B Superfamily | Group I dsDNA viruses | 8096612 | 3000939 | SCOP2B (2022-06-29) |
G [auth E] | SCOP2B Superfamily | Group I dsDNA viruses | 8096612 | 3000939 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A [auth L2] | PF07686 | e7k23L21 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: PF07686 | ECOD (1.6) |
H [auth L3] | PF07686 | e7k23L31 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: PF07686 | ECOD (1.6) |
J [auth L4] | PF07686 | e7k23L41 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: PF07686 | ECOD (1.6) |
L [auth L5] | PF07686 | e7k23L51 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: PF07686 | ECOD (1.6) |
N [auth L6] | PF07686 | e7k23L61 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: PF07686 | ECOD (1.6) |
B [auth H2] | PF07686 | e7k23H21 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: PF07686 | ECOD (1.6) |
I [auth H3] | PF07686 | e7k23H31 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: PF07686 | ECOD (1.6) |
K [auth H4] | PF07686 | e7k23H41 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: PF07686 | ECOD (1.6) |
M [auth H5] | PF07686 | e7k23H51 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: PF07686 | ECOD (1.6) |
O [auth H6] | PF07686 | e7k23H61 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: PF07686 | ECOD (1.6) |
F [auth D] | PF00718 | e7k23D1 | A: beta sandwiches | X: jelly-roll | H: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology) | T: Nucleoplasmin-like/VP (viral coat and capsid proteins) | F: PF00718 | ECOD (1.6) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
C [auth A], D [auth B], E [auth C], F [auth D], G [auth E] | PF00718 | Polyomavirus coat protein (Polyoma_coat) | Polyomavirus coat protein | - | Domain |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
Chains | Polymer | Molecular Function | Biological Process | Cellular Component |
---|---|---|---|---|
A [auth L2], H [auth L3], J [auth L4], L [auth L5], N [auth L6] | 8A7H5 Fab light chain | - | - | - |
B [auth H2], I [auth H3], K [auth H4], M [auth H5], O [auth H6] | 8A7H5 Fab heavy chain | - | - | - |
C [auth A], D [auth B], E [auth C], F [auth D], G [auth E] | Capsid protein VP1 |
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
C [auth A], D [auth B], E [auth C], F [auth D], G [auth E] | IPR011222 | Double-stranded DNA virus, group I, capsid | Homologous Superfamily |
C [auth A], D [auth B], E [auth C], F [auth D], G [auth E] | IPR000662 | Capsid protein VP1,Polyomavirus | Family |
C [auth A], D [auth B], E [auth C], F [auth D], G [auth E] | IPR036931 | Polyomavirus capsid protein VP1 superfamily | Homologous Superfamily |