7ELA

Structure of Lassa virus polymerase in complex with 3'-vRNA and Z mutant (F36A)

External Resource: Annotation

Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
A [auth B]	SCOP2 Family	P-11 zinc finger-like	8103025	4004256	SCOP2 (2022-06-29)
A [auth B]	SCOP2 Superfamily	RING/U-box like	8103026	3000160	SCOP2 (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A [auth B]	PF03854	e7elaB1	A: few secondary structure elements	X: RING/U-box-like	H: RING/U-box-like	T: RING/U-box	F: PF03854	ECOD (1.6)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A [auth B]	PF03854	P-11 zinc finger (zf-P11)	P-11 zinc finger	-	Family
C [auth A]	PF17296	Arenavirus cap snatching domain (ArenaCapSnatch)	Arenavirus cap snatching domain	This domain represents the N-terminal domain of the Arenavirus polymerase that is involved in cap snatching during transcription initiation.	Domain
C [auth A]	PF06317	Arenavirus RNA polymerase (Arena_RNA_pol)	Arenavirus RNA polymerase	-	Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A [auth B]	RING finger protein Z	cation binding transition metal ion binding zinc ion binding ion binding binding metal ion binding small molecule binding RNA binding organic cyclic compound binding nucleic acid binding	virion assembly viral process viral budding viral budding via host ESCRT complex viral life cycle biological process involved in interspecies interaction between organisms non-lytic viral release biological process involved in interaction with host biological process involved in symbiotic interaction exit from host cell viral budding from plasma membrane viral release from host cell	virion component membrane cellular anatomical entity host cell plasma membrane host cellular component host cell part host cell membrane host intracellular part host cell perinuclear region of cytoplasm host cell cytoplasm host intracellular region host cell cytoplasm part
B [auth C]	3-'vRNA promoter	-	-	-
C [auth A]	RNA-directed RNA polymerase L	5'-3' RNA polymerase activity catalytic activity, acting on RNA catalytic activity, acting on a nucleic acid RNA polymerase activity transferase activity RNA-dependent RNA polymerase activity nucleotidyltransferase activity catalytic activity transferase activity, transferring phosphorus-containing groups hydrolase activity binding nucleoside phosphate binding organic cyclic compound binding nucleotide binding 5'-3' RNA polymerase activity catalytic activity, acting on RNA catalytic activity, acting on a nucleic acid RNA polymerase activity transferase activity RNA-dependent RNA polymerase activity nucleotidyltransferase activity catalytic activity transferase activity, transferring phosphorus-containing groups hydrolase activity binding nucleoside phosphate binding organic cyclic compound binding nucleotide binding heterocyclic compound binding small molecule binding cation binding ion binding metal ion binding	viral gene expression cap snatching negative stranded viral RNA transcription viral process viral transcription RNA-templated viral transcription cellular biosynthetic process RNA metabolic process viral life cycle RNA biosynthetic process nucleobase-containing compound metabolic process nucleic acid biosynthetic process organic substance metabolic process viral RNA genome replication viral gene expression cap snatching negative stranded viral RNA transcription viral process viral transcription RNA-templated viral transcription cellular biosynthetic process RNA metabolic process viral life cycle RNA biosynthetic process nucleobase-containing compound metabolic process nucleic acid biosynthetic process organic substance metabolic process viral RNA genome replication organic substance biosynthetic process cellular metabolic process primary metabolic process nucleobase-containing compound biosynthetic process macromolecule biosynthetic process nucleic acid metabolic process organic cyclic compound metabolic process negative stranded viral RNA replication viral genome replication biosynthetic process organic cyclic compound biosynthetic process metabolic process cellular process macromolecule metabolic process	virion component host cellular component host intracellular part host cell cytoplasm host cell part host intracellular region cellular anatomical entity

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A [auth B]	IPR038485	Protein Z, RING-type zinc finger superfamily	Homologous Superfamily
A [auth B]	IPR024183	RING finger protein Z, arenaviridae	Family
A [auth B]	IPR003224	RING finger protein Z, zinc finger	Domain
C [auth A]	IPR007099	RNA-directed RNA polymerase, negative-strand RNA virus	Domain
C [auth A]	IPR026382	RNA endonuclease, cap-snatching, arenaviral	Domain
C [auth A]	IPR048006	RNA endonuclease, cap-snatching, bunyaviral	Domain
C [auth A]	IPR010453	RNA polymerase, arenaviral	Family

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM133198.