Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

ChainsDomain InfoClassFoldSuperfamilyFamilyDomainSpeciesProvenance Source (Version)
J [auth l]d7dxal_ Membrane and cell surface proteins and peptides Single transmembrane helix Photosystem II reaction center protein L, PsbL PsbL-like Photosystem II reaction center protein L, PsbL (Thermostichus vulcanus ) [TaxId: 32053 ], SCOPe (2.08)
K [auth m]d7dxam_ Membrane and cell surface proteins and peptides Single transmembrane helix Photosystem II reaction center protein M, PsbM PsbM-like automated matches (Thermostichus vulcanus ) [TaxId: 32053 ], SCOPe (2.08)
L [auth t]d7dxat_ Membrane and cell surface proteins and peptides Single transmembrane helix Photosystem II reaction center protein T, PsbT PsbT-like Photosystem II reaction center protein T, PsbT (Thermostichus vulcanus ) [TaxId: 32053 ], SCOPe (2.08)
M [auth x]d7dxax_ Membrane and cell surface proteins and peptides Single transmembrane helix Photosystem II reaction center protein X, PsbX PsbX-like automated matches (Thermostichus vulcanus ) [TaxId: 32053 ], SCOPe (2.08)
C [auth a]d7dxaa_ Membrane and cell surface proteins and peptides Bacterial photosystem II reaction centre, L and M subunits Bacterial photosystem II reaction centre, L and M subunits Bacterial photosystem II reaction centre, L and M subunits automated matches (Thermostichus vulcanus ) [TaxId: 32053 ], SCOPe (2.08)
D [auth b]d7dxab_ Membrane and cell surface proteins and peptides Photosystem II antenna protein-like Photosystem II antenna protein-like Photosystem II antenna protein-like automated matches (Thermostichus vulcanus ) [TaxId: 32053 ], SCOPe (2.08)
E [auth d]d7dxad_ Membrane and cell surface proteins and peptides Bacterial photosystem II reaction centre, L and M subunits Bacterial photosystem II reaction centre, L and M subunits Bacterial photosystem II reaction centre, L and M subunits automated matches (Thermostichus vulcanus ) [TaxId: 32053 ], SCOPe (2.08)
F [auth e]d7dxae_ Membrane and cell surface proteins and peptides Single transmembrane helix Cytochrome b559 subunits Cytochrome b559 subunits automated matches (Thermostichus vulcanus ) [TaxId: 32053 ], SCOPe (2.08)
G [auth f]d7dxaf_ Membrane and cell surface proteins and peptides Single transmembrane helix Cytochrome b559 subunits Cytochrome b559 subunits automated matches (Thermostichus vulcanus ) [TaxId: 32053 ], SCOPe (2.08)
H [auth h]d7dxah_ Membrane and cell surface proteins and peptides Single transmembrane helix Photosystem II 10 kDa phosphoprotein PsbH PsbH-like Photosystem II reaction center protein H, PsbH (Thermostichus vulcanus ) [TaxId: 32053 ], SCOPe (2.08)
I [auth i]d7dxai_ Membrane and cell surface proteins and peptides Single transmembrane helix Photosystem II reaction center protein I, PsbI PsbI-like Photosystem II reaction center protein I, PsbI (Thermostichus vulcanus ) [TaxId: 32053 ], SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
ASCOP2B SuperfamilyPsb28-like8056979 3002372 SCOP2B (2022-06-29)
J [auth l]SCOP2B SuperfamilyPhotosystem II reaction center protein L PsbL8093612 3001523 SCOP2B (2022-06-29)
L [auth t]SCOP2B SuperfamilyPhotosystem II reaction center protein T PsbT8101519 3001561 SCOP2B (2022-06-29)
D [auth b]SCOP2B SuperfamilyPhotosystem II antenna protein-like8097548 3001674 SCOP2B (2022-06-29)
E [auth d]SCOP2B SuperfamilyBacterial photosystem II reaction centre L and M subunits8097554 3000736 SCOP2B (2022-06-29)
H [auth h]SCOP2B SuperfamilyPhotosystem II 10 kDa phosphoprotein PsbH8098552 3001547 SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
APF03912e7dxaA1 A: beta barrelsX: cradle loop barrelH: Photosystem II accessory factor Psb28 (From Topology)T: Photosystem II accessory factor Psb28F: PF03912ECOD (1.6)
J [auth l]PF02419e7dxal1 A: extended segmentsX: Photosystem II reaction center protein L, PsbL (From Topology)H: Photosystem II reaction center protein L, PsbL (From Topology)T: Photosystem II reaction center protein L, PsbLF: PF02419ECOD (1.6)
K [auth m]PF05151e7dxam1 A: extended segmentsX: Photosystem II reaction center protein M, PsbM (From Topology)H: Photosystem II reaction center protein M, PsbM (From Topology)T: Photosystem II reaction center protein M, PsbMF: PF05151ECOD (1.6)
L [auth t]PF01405e7dxat1 A: extended segmentsX: Photosystem II reaction center protein T, PsbT (From Topology)H: Photosystem II reaction center protein T, PsbT (From Topology)T: Photosystem II reaction center protein T, PsbTF: PF01405ECOD (1.6)
M [auth x]PF06596e7dxax1 A: extended segmentsX: Photosystem II PsbX protein (From Topology)H: Photosystem II PsbX protein (From Topology)T: Photosystem II PsbX proteinF: PF06596ECOD (1.6)
C [auth a]PF00124e7dxaa1 A: alpha bundlesX: Bacterial photosystem II reaction centre L and M subunits-like (From Topology)H: Bacterial photosystem II reaction centre L and M subunits-like (From Topology)T: Bacterial photosystem II reaction centre L and M subunits-likeF: PF00124ECOD (1.6)
D [auth b]PF00421e7dxab2 A: alpha bundlesX: Photosystem II antenna protein-like (From Topology)H: Photosystem II antenna protein-like (From Topology)T: Photosystem II antenna protein-likeF: PF00421ECOD (1.6)
D [auth b]PF00421e7dxab1 A: a+b two layersX: Photosystem II antenna protein PsbB insertion domain (From Topology)H: Photosystem II antenna protein PsbB insertion domain (From Topology)T: Photosystem II antenna protein PsbB insertion domainF: PF00421ECOD (1.6)
E [auth d]PF00124e7dxad1 A: alpha bundlesX: Bacterial photosystem II reaction centre L and M subunits-like (From Topology)H: Bacterial photosystem II reaction centre L and M subunits-like (From Topology)T: Bacterial photosystem II reaction centre L and M subunits-likeF: PF00124ECOD (1.6)
F [auth e]PF00284e7dxae1 A: extended segmentsX: Cytochrome b559 subunits (From Topology)H: Cytochrome b559 subunits (From Topology)T: Cytochrome b559 subunitsF: PF00284ECOD (1.6)
G [auth f]PF00283e7dxaf1 A: extended segmentsX: Cytochrome b559 subunits (From Topology)H: Cytochrome b559 subunits (From Topology)T: Cytochrome b559 subunitsF: PF00283ECOD (1.6)
H [auth h]PF00737e7dxah1 A: extended segmentsX: Photosystem II 10 kDa phosphoprotein PsbH (From Topology)H: Photosystem II 10 kDa phosphoprotein PsbH (From Topology)T: Photosystem II 10 kDa phosphoprotein PsbHF: PF00737ECOD (1.6)
I [auth i]PF02532e7dxai1 A: extended segmentsX: Photosystem II reaction center protein I, PsbI (From Topology)H: Photosystem II reaction center protein I, PsbI (From Topology)T: Photosystem II reaction center protein I, PsbIF: PF02532ECOD (1.6)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
PF03912Psb28 protein (Psb28)Psb28 protein- Family
J [auth l]PF02419PsbL protein (PsbL)PsbL protein- Family
K [auth m]PF05151Photosystem II reaction centre M protein (PsbM) (PsbM)Photosystem II reaction centre M protein (PsbM)- Family
L [auth t]PF01405Photosystem II reaction centre T protein (PsbT)Photosystem II reaction centre T protein- Family
M [auth x]PF06596Photosystem II reaction centre X protein (PsbX) (PsbX)Photosystem II reaction centre X protein (PsbX)- Family
C [auth a]PF00124Photosynthetic reaction centre protein (Photo_RC)Photosynthetic reaction centre protein- Family
D [auth b]PF00421Photosystem II protein (PSII)Photosystem II protein- Family
E [auth d]PF00124Photosynthetic reaction centre protein (Photo_RC)Photosynthetic reaction centre protein- Family
F [auth e]PF00283Cytochrome b559, alpha (gene psbE) and beta (gene psbF)subunits (Cytochrom_B559)Cytochrome b559, alpha (gene psbE) and beta (gene psbF)subunits- Family
F [auth e]PF00284Lumenal portion of Cytochrome b559, alpha (gene psbE) subunit (Cytochrom_B559a)Lumenal portion of Cytochrome b559, alpha (gene psbE) subunit- Family
G [auth f]PF00283Cytochrome b559, alpha (gene psbE) and beta (gene psbF)subunits (Cytochrom_B559)Cytochrome b559, alpha (gene psbE) and beta (gene psbF)subunits- Family
H [auth h]PF00737Photosystem II 10 kDa phosphoprotein (PsbH)Photosystem II 10 kDa phosphoprotein- Family
I [auth i]PF02532Photosystem II reaction centre I protein (PSII 4.8 kDa protein) (PsbI)Photosystem II reaction centre I protein (PSII 4.8 kDa protein)- Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
Photosystem II reaction center Psb28 protein-
J [auth l]Photosystem II reaction center protein L-
K [auth m]Photosystem II reaction center protein M-
L [auth t]Photosystem II reaction center protein T-
M [auth x]Photosystem II reaction center protein X-
N [auth C]unidentified transmembrane protein---
Tsl0063 protein-
C [auth a]Photosystem II protein D1
D [auth b]Photosystem II CP47 reaction center protein
E [auth d]Photosystem II D2 protein
F [auth e]Cytochrome b559 subunit alpha
G [auth f]Cytochrome b559 subunit beta
H [auth h]Photosystem II reaction center protein H
I [auth i]Photosystem II reaction center protein I-

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
IPR005610Photosystem II Psb28, class 1Family
IPR038676Photosystem II Psb28, class 1 superfamilyHomologous Superfamily
J [auth l]IPR003372Photosystem II PsbLFamily
J [auth l]IPR037266Photosystem II PsbL superfamilyHomologous Superfamily
K [auth m]IPR007826Photosystem II PsbMFamily
K [auth m]IPR037269Photosystem II PsbM superfamilyHomologous Superfamily
L [auth t]IPR001743Photosystem II PsbTFamily
L [auth t]IPR037268Photosystem II PsbT superfamilyHomologous Superfamily
M [auth x]IPR009518Photosystem II PsbXFamily
M [auth x]IPR023431Photosystem II PsbX, type 1 subfamilyFamily
IPR048028Photosystem II assembly protein Psb34-likeFamily
C [auth a]IPR005867Photosystem II protein D1Family
C [auth a]IPR036854Photosystem II protein D1/D2 superfamilyHomologous Superfamily
C [auth a]IPR000484Photosynthetic reaction centre, L/MFamily
D [auth b]IPR036001Photosystem antenna protein-like superfamilyHomologous Superfamily
D [auth b]IPR000932Photosystem antenna protein-likeFamily
D [auth b]IPR017486Photosystem II CP47 reaction centre proteinFamily
E [auth d]IPR036854Photosystem II protein D1/D2 superfamilyHomologous Superfamily
E [auth d]IPR000484Photosynthetic reaction centre, L/MFamily
E [auth d]IPR005868Photosystem II D2 proteinFamily
F [auth e]IPR013081Photosystem II cytochrome b559, N-terminalDomain
F [auth e]IPR006217Photosystem II cytochrome b559, alpha subunitFamily
F [auth e]IPR013082Photosystem II cytochrome b559, alpha subunit, lumenal regionDomain
F [auth e]IPR037025Photosystem II cytochrome b559, alpha subunit superfamilyHomologous Superfamily
F [auth e]IPR006216Photosystem II cytochrome b559, conserved siteConserved Site
G [auth f]IPR006241Photosystem II cytochrome b559, beta subunitFamily
G [auth f]IPR013081Photosystem II cytochrome b559, N-terminalDomain
G [auth f]IPR006216Photosystem II cytochrome b559, conserved siteConserved Site
H [auth h]IPR036863Photosystem II reaction centre protein H superfamilyHomologous Superfamily
H [auth h]IPR001056Photosystem II reaction centre protein HFamily
I [auth i]IPR037271Photosystem II PsbI superfamilyHomologous Superfamily
I [auth i]IPR003686Photosystem II PsbIFamily