7D0J
Photosystem I-LHCI-LHCII of Chlamydomonas reinhardtii
External Resource: Annotation
- Domain Annotation: SCOP2 Classification
- Domain Annotation: ECOD Classification
- Protein Family Annotation
- Gene Ontology: Gene Product Annotation
- InterPro: Protein Family Classification
- Membrane Protein Annotation: OPM
- Membrane Protein Annotation: PDBTM
- Membrane Protein Annotation: mpstruc
- Protein Modification Annotation
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
A | SCOP2B Superfamily | Photosystem I subunits PsaA/PsaB | 8094461 | 3000850 | SCOP2B (2022-06-29) |
J | SCOP2B Superfamily | Subunit IX of photosystem I reaction centre PsaJ | 8094723 | 3000824 | SCOP2B (2022-06-29) |
L | SCOP2B Superfamily | Photosystem I reaction center subunit XI PsaL | 8097190 | 3000870 | SCOP2B (2022-06-29) |
N [auth P] | SCOP2B Superfamily | Chlorophyll a-b binding protein | 8094579 | 3000343 | SCOP2B (2022-06-29) |
O [auth Q] | SCOP2B Superfamily | Chlorophyll a-b binding protein | 8094579 | 3000343 | SCOP2B (2022-06-29) |
P [auth R] | SCOP2B Superfamily | Chlorophyll a-b binding protein | 8094579 | 3000343 | SCOP2B (2022-06-29) |
R [auth T] | SCOP2B Superfamily | Chlorophyll a-b binding protein | 8094579 | 3000343 | SCOP2B (2022-06-29) |
S [auth U] | SCOP2B Superfamily | Chlorophyll a-b binding protein | 8094579 | 3000343 | SCOP2B (2022-06-29) |
Q [auth S] | SCOP2 Family | Chlorophyll a-b binding protein | 8102644 | 4001763 | SCOP2 (2022-06-29) |
Q [auth S] | SCOP2 Superfamily | Chlorophyll a-b binding protein | 8102645 | 3000343 | SCOP2 (2022-06-29) |
CA [auth a] | SCOP2B Superfamily | Chlorophyll a-b binding protein | 8099102 | 3000343 | SCOP2B (2022-06-29) |
T [auth 1] | SCOP2B Superfamily | Chlorophyll a-b binding protein | 8099102 | 3000343 | SCOP2B (2022-06-29) |
U [auth 2] | SCOP2B Superfamily | Chlorophyll a-b binding protein | 8097188 | 3000343 | SCOP2B (2022-06-29) |
W [auth 4] | SCOP2B Superfamily | Chlorophyll a-b binding protein | 8099934 | 3000343 | SCOP2B (2022-06-29) |
B | SCOP2B Superfamily | Photosystem I subunits PsaA/PsaB | 8094499 | 3000850 | SCOP2B (2022-06-29) |
X [auth 5] | SCOP2B Superfamily | Chlorophyll a-b binding protein | 8099932 | 3000343 | SCOP2B (2022-06-29) |
Y [auth 6] | SCOP2B Superfamily | Chlorophyll a-b binding protein | 8099928 | 3000343 | SCOP2B (2022-06-29) |
Z [auth 7] | SCOP2B Superfamily | Chlorophyll a-b binding protein | 8099926 | 3000343 | SCOP2B (2022-06-29) |
AA [auth 8] | SCOP2B Superfamily | Chlorophyll a-b binding protein | 8099930 | 3000343 | SCOP2B (2022-06-29) |
BA [auth 9] | SCOP2 Family | Chlorophyll a-b binding protein | 8102702 | 4001763 | SCOP2 (2022-06-29) |
BA [auth 9] | SCOP2 Superfamily | Chlorophyll a-b binding protein | 8102703 | 3000343 | SCOP2 (2022-06-29) |
C | SCOP2B Superfamily | 4Fe-4S ferredoxins | 8093860 | 3000020 | SCOP2B (2022-06-29) |
D | SCOP2B Superfamily | Photosystem I subunit PsaD | 8095071 | 3000951 | SCOP2B (2022-06-29) |
E | SCOP2B Superfamily | Electron transport accessory proteins | 8094773 | 3000325 | SCOP2B (2022-06-29) |
F | SCOP2B Superfamily | Subunit III of photosystem I reaction centre PsaF | 8094180 | 3000813 | SCOP2B (2022-06-29) |
H | SCOP2B Superfamily | Photosystem I reaction centre subunit VI | 8104297 | 3002733 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | PF00223 | e7d0jA2 | A: alpha bundles | X: Bacterial photosystem II reaction centre L and M subunits-like (From Topology) | H: Bacterial photosystem II reaction centre L and M subunits-like (From Topology) | T: Bacterial photosystem II reaction centre L and M subunits-like | F: PF00223 | ECOD (1.6) |
A | PF00223 | e7d0jA1 | A: alpha bundles | X: Photosystem II antenna protein-like (From Topology) | H: Photosystem II antenna protein-like (From Topology) | T: Photosystem II antenna protein-like | F: PF00223 | ECOD (1.6) |
J | PF01701 | e7d0jJ1 | A: extended segments | X: Subunit IX of photosystem I reaction centre, PsaJ (From Topology) | H: Subunit IX of photosystem I reaction centre, PsaJ (From Topology) | T: Subunit IX of photosystem I reaction centre, PsaJ | F: PF01701 | ECOD (1.6) |
K | PF01241 | e7d0jK1 | A: alpha bundles | X: Photosystem I reaction center subunit X, PsaK (From Topology) | H: Photosystem I reaction center subunit X, PsaK (From Topology) | T: Photosystem I reaction center subunit X, PsaK | F: PF01241 | ECOD (1.6) |
L | PF02605 | e7d0jL1 | A: alpha bundles | X: Photosystem I reaction center subunit XI, PsaL (From Topology) | H: Photosystem I reaction center subunit XI, PsaL (From Topology) | T: Photosystem I reaction center subunit XI, PsaL | F: PF02605 | ECOD (1.6) |
N [auth P] | PF00504 | e7d0jP1 | A: extended segments | X: Chlorophyll a-b binding protein (From Topology) | H: Chlorophyll a-b binding protein (From Topology) | T: Chlorophyll a-b binding protein | F: PF00504 | ECOD (1.6) |
O [auth Q] | PF00504 | e7d0jQ1 | A: extended segments | X: Chlorophyll a-b binding protein (From Topology) | H: Chlorophyll a-b binding protein (From Topology) | T: Chlorophyll a-b binding protein | F: PF00504 | ECOD (1.6) |
P [auth R] | PF00504 | e7d0jR1 | A: extended segments | X: Chlorophyll a-b binding protein (From Topology) | H: Chlorophyll a-b binding protein (From Topology) | T: Chlorophyll a-b binding protein | F: PF00504 | ECOD (1.6) |
R [auth T] | PF00504 | e7d0jT1 | A: extended segments | X: Chlorophyll a-b binding protein (From Topology) | H: Chlorophyll a-b binding protein (From Topology) | T: Chlorophyll a-b binding protein | F: PF00504 | ECOD (1.6) |
S [auth U] | PF00504 | e7d0jU1 | A: extended segments | X: Chlorophyll a-b binding protein (From Topology) | H: Chlorophyll a-b binding protein (From Topology) | T: Chlorophyll a-b binding protein | F: PF00504 | ECOD (1.6) |
Q [auth S] | PF00504 | e7d0jS1 | A: extended segments | X: Chlorophyll a-b binding protein (From Topology) | H: Chlorophyll a-b binding protein (From Topology) | T: Chlorophyll a-b binding protein | F: PF00504 | ECOD (1.6) |
CA [auth a] | PF00504 | e7d0ja1 | A: extended segments | X: Chlorophyll a-b binding protein (From Topology) | H: Chlorophyll a-b binding protein (From Topology) | T: Chlorophyll a-b binding protein | F: PF00504 | ECOD (1.6) |
T [auth 1] | PF00504 | e7d0j11 | A: extended segments | X: Chlorophyll a-b binding protein (From Topology) | H: Chlorophyll a-b binding protein (From Topology) | T: Chlorophyll a-b binding protein | F: PF00504 | ECOD (1.6) |
U [auth 2] | PF00504 | e7d0j21 | A: extended segments | X: Chlorophyll a-b binding protein (From Topology) | H: Chlorophyll a-b binding protein (From Topology) | T: Chlorophyll a-b binding protein | F: PF00504 | ECOD (1.6) |
V [auth 3] | PF00504 | e7d0j31 | A: extended segments | X: Chlorophyll a-b binding protein (From Topology) | H: Chlorophyll a-b binding protein (From Topology) | T: Chlorophyll a-b binding protein | F: PF00504 | ECOD (1.6) |
W [auth 4] | PF00504 | e7d0j41 | A: extended segments | X: Chlorophyll a-b binding protein (From Topology) | H: Chlorophyll a-b binding protein (From Topology) | T: Chlorophyll a-b binding protein | F: PF00504 | ECOD (1.6) |
B | PF00223 | e7d0jB1 | A: alpha bundles | X: Bacterial photosystem II reaction centre L and M subunits-like (From Topology) | H: Bacterial photosystem II reaction centre L and M subunits-like (From Topology) | T: Bacterial photosystem II reaction centre L and M subunits-like | F: PF00223 | ECOD (1.6) |
B | PF00223 | e7d0jB2 | A: alpha bundles | X: Photosystem II antenna protein-like (From Topology) | H: Photosystem II antenna protein-like (From Topology) | T: Photosystem II antenna protein-like | F: PF00223 | ECOD (1.6) |
X [auth 5] | PF00504 | e7d0j51 | A: extended segments | X: Chlorophyll a-b binding protein (From Topology) | H: Chlorophyll a-b binding protein (From Topology) | T: Chlorophyll a-b binding protein | F: PF00504 | ECOD (1.6) |
Y [auth 6] | PF00504 | e7d0j61 | A: extended segments | X: Chlorophyll a-b binding protein (From Topology) | H: Chlorophyll a-b binding protein (From Topology) | T: Chlorophyll a-b binding protein | F: PF00504 | ECOD (1.6) |
Z [auth 7] | PF00504 | e7d0j71 | A: extended segments | X: Chlorophyll a-b binding protein (From Topology) | H: Chlorophyll a-b binding protein (From Topology) | T: Chlorophyll a-b binding protein | F: PF00504 | ECOD (1.6) |
AA [auth 8] | PF00504 | e7d0j81 | A: extended segments | X: Chlorophyll a-b binding protein (From Topology) | H: Chlorophyll a-b binding protein (From Topology) | T: Chlorophyll a-b binding protein | F: PF00504 | ECOD (1.6) |
BA [auth 9] | PF00504 | e7d0j91 | A: extended segments | X: Chlorophyll a-b binding protein (From Topology) | H: Chlorophyll a-b binding protein (From Topology) | T: Chlorophyll a-b binding protein | F: PF00504 | ECOD (1.6) |
C | PF00037 | e7d0jC1 | A: a+b two layers | X: 4Fe-4S ferredoxin (From Topology) | H: 4Fe-4S ferredoxin (From Topology) | T: 4Fe-4S ferredoxin | F: PF00037 | ECOD (1.6) |
D | PF02531 | e7d0jD1 | A: a+b two layers | X: Photosystem I subunit PsaD (From Topology) | H: Photosystem I subunit PsaD (From Topology) | T: Photosystem I subunit PsaD | F: PF02531 | ECOD (1.6) |
E | PF02427 | e7d0jE1 | A: beta barrels | X: SH3 | H: SH3 | T: SH3 | F: PF02427 | ECOD (1.6) |
F | PF02507 | e7d0jF1 | A: extended segments | X: Subunit III of photosystem I reaction centre, PsaF (From Topology) | H: Subunit III of photosystem I reaction centre, PsaF (From Topology) | T: Subunit III of photosystem I reaction centre, PsaF | F: PF02507 | ECOD (1.6) |
G | PF01241 | e7d0jG1 | A: alpha bundles | X: Photosystem I reaction center subunit X, PsaK (From Topology) | H: Photosystem I reaction center subunit X, PsaK (From Topology) | T: Photosystem I reaction center subunit X, PsaK | F: PF01241 | ECOD (1.6) |
H | PF03244 | e7d0jH1 | A: extended segments | X: Subunit VI of Photosystem I reaction centre (From Topology) | H: Subunit VI of Photosystem I reaction centre (From Topology) | T: Subunit VI of Photosystem I reaction centre | F: PF03244 | ECOD (1.6) |
I | PF00796 | e7d0jI1 | A: extended segments | X: Subunit VIII of photosystem I reaction centre, PsaI (From Topology) | H: Subunit VIII of photosystem I reaction centre, PsaI (From Topology) | T: Subunit VIII of photosystem I reaction centre, PsaI | F: PF00796 | ECOD (1.6) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF00223 | Photosystem I psaA/psaB protein (PsaA_PsaB) | Photosystem I psaA/psaB protein | - | Family | |
PF01701 | Photosystem I reaction centre subunit IX / PsaJ (PSI_PsaJ) | Photosystem I reaction centre subunit IX / PsaJ | - | Family | |
PF01241 | Photosystem I psaG / psaK (PSI_PSAK) | Photosystem I psaG / psaK | - | Family | |
PF02605 | Photosystem I reaction centre subunit XI (PsaL) | Photosystem I reaction centre subunit XI | - | Family | |
N [auth P], O [auth Q], P [auth R], R [auth T], S [auth U] | PF00504 | Chlorophyll A-B binding protein (Chloroa_b-bind) | Chlorophyll A-B binding protein | - | Family |
Q [auth S] | PF00504 | Chlorophyll A-B binding protein (Chloroa_b-bind) | Chlorophyll A-B binding protein | - | Family |
CA [auth a], T [auth 1] | PF00504 | Chlorophyll A-B binding protein (Chloroa_b-bind) | Chlorophyll A-B binding protein | - | Family |
U [auth 2] | PF00504 | Chlorophyll A-B binding protein (Chloroa_b-bind) | Chlorophyll A-B binding protein | - | Family |
W [auth 4] | PF00504 | Chlorophyll A-B binding protein (Chloroa_b-bind) | Chlorophyll A-B binding protein | - | Family |
PF00223 | Photosystem I psaA/psaB protein (PsaA_PsaB) | Photosystem I psaA/psaB protein | - | Family | |
X [auth 5] | PF00504 | Chlorophyll A-B binding protein (Chloroa_b-bind) | Chlorophyll A-B binding protein | - | Family |
Y [auth 6] | PF00504 | Chlorophyll A-B binding protein (Chloroa_b-bind) | Chlorophyll A-B binding protein | - | Family |
Z [auth 7] | PF00504 | Chlorophyll A-B binding protein (Chloroa_b-bind) | Chlorophyll A-B binding protein | - | Family |
AA [auth 8] | PF00504 | Chlorophyll A-B binding protein (Chloroa_b-bind) | Chlorophyll A-B binding protein | - | Family |
BA [auth 9] | PF00504 | Chlorophyll A-B binding protein (Chloroa_b-bind) | Chlorophyll A-B binding protein | - | Family |
PF12838 | 4Fe-4S dicluster domain (Fer4_7) | 4Fe-4S dicluster domain | Superfamily includes proteins containing domains which bind to iron-sulfur clusters. Members include bacterial ferredoxins, various dehydrogenases, and various reductases. Structure of the domain is an alpha-antiparallel beta sandwich. Domain contai ... | Domain | |
PF02531 | PsaD (PsaD) | PsaD | - | Family | |
PF02427 | Photosystem I reaction centre subunit IV / PsaE (PSI_PsaE) | Photosystem I reaction centre subunit IV / PsaE | PsaE is a 69 amino acid polypeptide from photosystem I present on the stromal side of the thylakoid membrane [1]. The structure is comprised of a well-defined five-stranded beta-sheet similar to SH3 domains [1]. | Domain | |
PF02507 | Photosystem I reaction centre subunit III (PSI_PsaF) | Photosystem I reaction centre subunit III | - | Family | |
PF01241 | Photosystem I psaG / psaK (PSI_PSAK) | Photosystem I psaG / psaK | - | Family | |
PF03244 | Photosystem I reaction centre subunit VI (PSI_PsaH) | Photosystem I reaction centre subunit VI | - | Family | |
PF00796 | Photosystem I reaction centre subunit VIII (PSI_8) | Photosystem I reaction centre subunit VIII | - | Family |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Membrane Protein Annotation: OPM OPM Database Homepage
Chains | External Link | Type | Class | Superfamily | Family |
---|---|---|---|---|---|
OPM | Transmembrane | Alpha-helical polytopic | Photosystems | Photosystem I |
Membrane Protein Annotation: PDBTM PDBTM Database Homepage
Membrane Protein Annotation: mpstruc mpstruc Database Homepage
Chains | Resource Link | Group | Subgroup | Protein |
---|---|---|---|---|
mpstruc | TRANSMEMBRANE PROTEINS: ALPHA-HELICAL | Photosystem+Light-Harvesting Complex Supercomplex | photosystem I-LHCI-LHCII super complex in state 2 |
Protein Modification Annotation
Modified Residue(s) | ||
---|---|---|
Chain | Residue(s) | Description |
Q [auth S] | TPO | Parent Component: THR :  AA0038 :  O-phospho-L-threonine MOD:00047 |