7COY

Structure of the far-red light utilizing photosystem I of Acaryochloris marina


Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
A [auth aA]SCOP2 FamilyPhotosystem I subunits PsaA/PsaB8102812 4002118 SCOP2 (2022-06-29)
A [auth aA]SCOP2 SuperfamilyPhotosystem I subunits PsaA/PsaB8102813 3000850 SCOP2 (2022-06-29)
L [auth bA]SCOP2B SuperfamilyPhotosystem I subunits PsaA/PsaB8102813 3000850 SCOP2B (2022-06-29)
W [auth cA]SCOP2B SuperfamilyPhotosystem I subunits PsaA/PsaB8102813 3000850 SCOP2B (2022-06-29)
FA [auth cL]SCOP2B SuperfamilyPhotosystem I reaction center subunit XI PsaL8102819 3000870 SCOP2B (2022-06-29)
J [auth aL]SCOP2 FamilyPhotosystem I reaction center subunit XI PsaL8102818 4002135 SCOP2 (2022-06-29)
J [auth aL]SCOP2 SuperfamilyPhotosystem I reaction center subunit XI PsaL8102819 3000870 SCOP2 (2022-06-29)
U [auth bL]SCOP2B SuperfamilyPhotosystem I reaction center subunit XI PsaL8102819 3000870 SCOP2B (2022-06-29)
B [auth aB]SCOP2B SuperfamilyPhotosystem I subunits PsaA/PsaB8102815 3000850 SCOP2B (2022-06-29)
M [auth bB]SCOP2B SuperfamilyPhotosystem I subunits PsaA/PsaB8102815 3000850 SCOP2B (2022-06-29)
X [auth cB]SCOP2 FamilyPhotosystem I subunits PsaA/PsaB8102814 4002118 SCOP2 (2022-06-29)
X [auth cB]SCOP2 SuperfamilyPhotosystem I subunits PsaA/PsaB8102815 3000850 SCOP2 (2022-06-29)
C [auth aC]SCOP2B Superfamily4Fe-4S ferredoxins8102829 3000020 SCOP2B (2022-06-29)
N [auth bC]SCOP2 Family7-Fe ferredoxin8102828 4001227 SCOP2 (2022-06-29)
N [auth bC]SCOP2 Superfamily4Fe-4S ferredoxins8102829 3000020 SCOP2 (2022-06-29)
Y [auth cC]SCOP2B Superfamily4Fe-4S ferredoxins8102829 3000020 SCOP2B (2022-06-29)
D [auth aD]SCOP2 FamilyPhotosystem I subunit PsaD8102824 4003498 SCOP2 (2022-06-29)
D [auth aD]SCOP2 SuperfamilyPhotosystem I subunit PsaD8102825 3000951 SCOP2 (2022-06-29)
O [auth bD]SCOP2B SuperfamilyPhotosystem I subunit PsaD8102825 3000951 SCOP2B (2022-06-29)
Z [auth cD]SCOP2B SuperfamilyPhotosystem I subunit PsaD8102825 3000951 SCOP2B (2022-06-29)
AA [auth cE]SCOP2B SuperfamilyElectron transport accessory proteins8102817 3000325 SCOP2B (2022-06-29)
E [auth aE]SCOP2 FamilyPhotosystem I accessory protein E (PsaE)8102816 4001749 SCOP2 (2022-06-29)
E [auth aE]SCOP2 SuperfamilyElectron transport accessory proteins8102817 3000325 SCOP2 (2022-06-29)
P [auth bE]SCOP2B SuperfamilyElectron transport accessory proteins8102817 3000325 SCOP2B (2022-06-29)
BA [auth cF]SCOP2 FamilySubunit III of photosystem I reaction centre PsaF8102822 4002091 SCOP2 (2022-06-29)
BA [auth cF]SCOP2 SuperfamilySubunit III of photosystem I reaction centre PsaF8102823 3000813 SCOP2 (2022-06-29)
F [auth aF]SCOP2B SuperfamilySubunit III of photosystem I reaction centre PsaF8102823 3000813 SCOP2B (2022-06-29)
Q [auth bF]SCOP2B SuperfamilySubunit III of photosystem I reaction centre PsaF8102823 3000813 SCOP2B (2022-06-29)
DA [auth cJ]SCOP2 FamilySubunit IX of photosystem I reaction centre PsaJ8102820 4002101 SCOP2 (2022-06-29)
DA [auth cJ]SCOP2 SuperfamilySubunit IX of photosystem I reaction centre PsaJ8102821 3000824 SCOP2 (2022-06-29)
H [auth aJ]SCOP2B SuperfamilySubunit IX of photosystem I reaction centre PsaJ8102821 3000824 SCOP2B (2022-06-29)
S [auth bJ]SCOP2B SuperfamilySubunit IX of photosystem I reaction centre PsaJ8102821 3000824 SCOP2B (2022-06-29)
T [auth bK]SCOP2 FamilyPhotosystem I reaction center subunit X PsaK8102826 4002128 SCOP2 (2022-06-29)
T [auth bK]SCOP2 SuperfamilyPhotosystem I reaction center subunit X PsaK8102827 3000859 SCOP2 (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
A [auth aA]PF00223e7coyaA1 A: alpha bundlesX: Bacterial photosystem II reaction centre L and M subunits-like (From Topology)H: Bacterial photosystem II reaction centre L and M subunits-like (From Topology)T: Bacterial photosystem II reaction centre L and M subunits-likeF: PF00223ECOD (1.6)
A [auth aA]PF00223e7coyaA2 A: alpha bundlesX: Photosystem II antenna protein-like (From Topology)H: Photosystem II antenna protein-like (From Topology)T: Photosystem II antenna protein-likeF: PF00223ECOD (1.6)
L [auth bA]PF00223e7coybA1 A: alpha bundlesX: Bacterial photosystem II reaction centre L and M subunits-like (From Topology)H: Bacterial photosystem II reaction centre L and M subunits-like (From Topology)T: Bacterial photosystem II reaction centre L and M subunits-likeF: PF00223ECOD (1.6)
L [auth bA]PF00223e7coybA2 A: alpha bundlesX: Photosystem II antenna protein-like (From Topology)H: Photosystem II antenna protein-like (From Topology)T: Photosystem II antenna protein-likeF: PF00223ECOD (1.6)
W [auth cA]PF00223e7coycA2 A: alpha bundlesX: Bacterial photosystem II reaction centre L and M subunits-like (From Topology)H: Bacterial photosystem II reaction centre L and M subunits-like (From Topology)T: Bacterial photosystem II reaction centre L and M subunits-likeF: PF00223ECOD (1.6)
W [auth cA]PF00223e7coycA1 A: alpha bundlesX: Photosystem II antenna protein-like (From Topology)H: Photosystem II antenna protein-like (From Topology)T: Photosystem II antenna protein-likeF: PF00223ECOD (1.6)
FA [auth cL]PF02605e7coycL1 A: alpha bundlesX: Photosystem I reaction center subunit XI, PsaL (From Topology)H: Photosystem I reaction center subunit XI, PsaL (From Topology)T: Photosystem I reaction center subunit XI, PsaLF: PF02605ECOD (1.6)
J [auth aL]PF02605e7coyaL1 A: alpha bundlesX: Photosystem I reaction center subunit XI, PsaL (From Topology)H: Photosystem I reaction center subunit XI, PsaL (From Topology)T: Photosystem I reaction center subunit XI, PsaLF: PF02605ECOD (1.6)
U [auth bL]PF02605e7coybL1 A: alpha bundlesX: Photosystem I reaction center subunit XI, PsaL (From Topology)H: Photosystem I reaction center subunit XI, PsaL (From Topology)T: Photosystem I reaction center subunit XI, PsaLF: PF02605ECOD (1.6)
GA [auth cM]PF07465e7coycM1 A: extended segmentsX: Subunit XII of photosystem I reaction centre, PsaM (From Topology)H: Subunit XII of photosystem I reaction centre, PsaM (From Topology)T: Subunit XII of photosystem I reaction centre, PsaMF: PF07465ECOD (1.6)
K [auth aM]PF07465e7coyaM1 A: extended segmentsX: Subunit XII of photosystem I reaction centre, PsaM (From Topology)H: Subunit XII of photosystem I reaction centre, PsaM (From Topology)T: Subunit XII of photosystem I reaction centre, PsaMF: PF07465ECOD (1.6)
V [auth bM]PF07465e7coybM1 A: extended segmentsX: Subunit XII of photosystem I reaction centre, PsaM (From Topology)H: Subunit XII of photosystem I reaction centre, PsaM (From Topology)T: Subunit XII of photosystem I reaction centre, PsaMF: PF07465ECOD (1.6)
B [auth aB]PF00223e7coyaB2 A: alpha bundlesX: Bacterial photosystem II reaction centre L and M subunits-like (From Topology)H: Bacterial photosystem II reaction centre L and M subunits-like (From Topology)T: Bacterial photosystem II reaction centre L and M subunits-likeF: PF00223ECOD (1.6)
B [auth aB]PF00223e7coyaB1 A: alpha bundlesX: Photosystem II antenna protein-like (From Topology)H: Photosystem II antenna protein-like (From Topology)T: Photosystem II antenna protein-likeF: PF00223ECOD (1.6)
M [auth bB]PF00223e7coybB2 A: alpha bundlesX: Bacterial photosystem II reaction centre L and M subunits-like (From Topology)H: Bacterial photosystem II reaction centre L and M subunits-like (From Topology)T: Bacterial photosystem II reaction centre L and M subunits-likeF: PF00223ECOD (1.6)
M [auth bB]PF00223e7coybB1 A: alpha bundlesX: Photosystem II antenna protein-like (From Topology)H: Photosystem II antenna protein-like (From Topology)T: Photosystem II antenna protein-likeF: PF00223ECOD (1.6)
X [auth cB]PF00223e7coycB2 A: alpha bundlesX: Bacterial photosystem II reaction centre L and M subunits-like (From Topology)H: Bacterial photosystem II reaction centre L and M subunits-like (From Topology)T: Bacterial photosystem II reaction centre L and M subunits-likeF: PF00223ECOD (1.6)
X [auth cB]PF00223e7coycB1 A: alpha bundlesX: Photosystem II antenna protein-like (From Topology)H: Photosystem II antenna protein-like (From Topology)T: Photosystem II antenna protein-likeF: PF00223ECOD (1.6)
C [auth aC]PF00037e7coyaC1 A: a+b two layersX: 4Fe-4S ferredoxin (From Topology)H: 4Fe-4S ferredoxin (From Topology)T: 4Fe-4S ferredoxinF: PF00037ECOD (1.6)
N [auth bC]PF00037e7coybC1 A: a+b two layersX: 4Fe-4S ferredoxin (From Topology)H: 4Fe-4S ferredoxin (From Topology)T: 4Fe-4S ferredoxinF: PF00037ECOD (1.6)
Y [auth cC]PF00037e7coycC1 A: a+b two layersX: 4Fe-4S ferredoxin (From Topology)H: 4Fe-4S ferredoxin (From Topology)T: 4Fe-4S ferredoxinF: PF00037ECOD (1.6)
D [auth aD]PF02531e7coyaD1 A: a+b two layersX: Photosystem I subunit PsaD (From Topology)H: Photosystem I subunit PsaD (From Topology)T: Photosystem I subunit PsaDF: PF02531ECOD (1.6)
O [auth bD]PF02531e7coybD1 A: a+b two layersX: Photosystem I subunit PsaD (From Topology)H: Photosystem I subunit PsaD (From Topology)T: Photosystem I subunit PsaDF: PF02531ECOD (1.6)
Z [auth cD]PF02531e7coycD1 A: a+b two layersX: Photosystem I subunit PsaD (From Topology)H: Photosystem I subunit PsaD (From Topology)T: Photosystem I subunit PsaDF: PF02531ECOD (1.6)
AA [auth cE]PF02427e7coycE1 A: beta barrelsX: SH3H: SH3T: SH3F: PF02427ECOD (1.6)
E [auth aE]PF02427e7coyaE1 A: beta barrelsX: SH3H: SH3T: SH3F: PF02427ECOD (1.6)
P [auth bE]PF02427e7coybE1 A: beta barrelsX: SH3H: SH3T: SH3F: PF02427ECOD (1.6)
BA [auth cF]PF02507e7coycF1 A: extended segmentsX: Subunit III of photosystem I reaction centre, PsaF (From Topology)H: Subunit III of photosystem I reaction centre, PsaF (From Topology)T: Subunit III of photosystem I reaction centre, PsaFF: PF02507ECOD (1.6)
F [auth aF]PF02507e7coyaF1 A: extended segmentsX: Subunit III of photosystem I reaction centre, PsaF (From Topology)H: Subunit III of photosystem I reaction centre, PsaF (From Topology)T: Subunit III of photosystem I reaction centre, PsaFF: PF02507ECOD (1.6)
Q [auth bF]PF02507e7coybF1 A: extended segmentsX: Subunit III of photosystem I reaction centre, PsaF (From Topology)H: Subunit III of photosystem I reaction centre, PsaF (From Topology)T: Subunit III of photosystem I reaction centre, PsaFF: PF02507ECOD (1.6)
CA [auth cI]F_UNCLASSIFIEDe7coycI1 A: extended segmentsX: Subunit VIII of photosystem I reaction centre, PsaI (From Topology)H: Subunit VIII of photosystem I reaction centre, PsaI (From Topology)T: Subunit VIII of photosystem I reaction centre, PsaIF: F_UNCLASSIFIEDECOD (1.6)
G [auth aI]F_UNCLASSIFIEDe7coyaI1 A: extended segmentsX: Subunit VIII of photosystem I reaction centre, PsaI (From Topology)H: Subunit VIII of photosystem I reaction centre, PsaI (From Topology)T: Subunit VIII of photosystem I reaction centre, PsaIF: F_UNCLASSIFIEDECOD (1.6)
R [auth bI]F_UNCLASSIFIEDe7coybI1 A: extended segmentsX: Subunit VIII of photosystem I reaction centre, PsaI (From Topology)H: Subunit VIII of photosystem I reaction centre, PsaI (From Topology)T: Subunit VIII of photosystem I reaction centre, PsaIF: F_UNCLASSIFIEDECOD (1.6)
DA [auth cJ]PF01701e7coycJ1 A: extended segmentsX: Subunit IX of photosystem I reaction centre, PsaJ (From Topology)H: Subunit IX of photosystem I reaction centre, PsaJ (From Topology)T: Subunit IX of photosystem I reaction centre, PsaJF: PF01701ECOD (1.6)
H [auth aJ]PF01701e7coyaJ1 A: extended segmentsX: Subunit IX of photosystem I reaction centre, PsaJ (From Topology)H: Subunit IX of photosystem I reaction centre, PsaJ (From Topology)T: Subunit IX of photosystem I reaction centre, PsaJF: PF01701ECOD (1.6)
S [auth bJ]PF01701e7coybJ1 A: extended segmentsX: Subunit IX of photosystem I reaction centre, PsaJ (From Topology)H: Subunit IX of photosystem I reaction centre, PsaJ (From Topology)T: Subunit IX of photosystem I reaction centre, PsaJF: PF01701ECOD (1.6)
EA [auth cK]F_UNCLASSIFIEDe7coycK1 A: alpha bundlesX: Photosystem I reaction center subunit X, PsaK (From Topology)H: Photosystem I reaction center subunit X, PsaK (From Topology)T: Photosystem I reaction center subunit X, PsaKF: F_UNCLASSIFIEDECOD (1.6)
I [auth aK]F_UNCLASSIFIEDe7coyaK1 A: alpha bundlesX: Photosystem I reaction center subunit X, PsaK (From Topology)H: Photosystem I reaction center subunit X, PsaK (From Topology)T: Photosystem I reaction center subunit X, PsaKF: F_UNCLASSIFIEDECOD (1.6)
T [auth bK]F_UNCLASSIFIEDe7coybK1 A: alpha bundlesX: Photosystem I reaction center subunit X, PsaK (From Topology)H: Photosystem I reaction center subunit X, PsaK (From Topology)T: Photosystem I reaction center subunit X, PsaKF: F_UNCLASSIFIEDECOD (1.6)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
A [auth aA],
L [auth bA],
W [auth cA]
PF00223Photosystem I psaA/psaB protein (PsaA_PsaB)Photosystem I psaA/psaB protein- Family
FA [auth cL],
J [auth aL],
U [auth bL]
PF02605Photosystem I reaction centre subunit XI (PsaL)Photosystem I reaction centre subunit XI- Family
B [auth aB],
M [auth bB],
X [auth cB]
PF00223Photosystem I psaA/psaB protein (PsaA_PsaB)Photosystem I psaA/psaB protein- Family
C [auth aC],
N [auth bC],
Y [auth cC]
PF128384Fe-4S dicluster domain (Fer4_7)4Fe-4S dicluster domainSuperfamily includes proteins containing domains which bind to iron-sulfur clusters. Members include bacterial ferredoxins, various dehydrogenases, and various reductases. Structure of the domain is an alpha-antiparallel beta sandwich. Domain contai ...Superfamily includes proteins containing domains which bind to iron-sulfur clusters. Members include bacterial ferredoxins, various dehydrogenases, and various reductases. Structure of the domain is an alpha-antiparallel beta sandwich. Domain contains two 4Fe4S clusters.
Domain
D [auth aD],
O [auth bD],
Z [auth cD]
PF02531PsaD (PsaD)PsaD- Family
AA [auth cE],
E [auth aE],
P [auth bE]
PF02427Photosystem I reaction centre subunit IV / PsaE (PSI_PsaE)Photosystem I reaction centre subunit IV / PsaEPsaE is a 69 amino acid polypeptide from photosystem I present on the stromal side of the thylakoid membrane [1]. The structure is comprised of a well-defined five-stranded beta-sheet similar to SH3 domains [1].Domain
BA [auth cF],
F [auth aF],
Q [auth bF]
PF02507Photosystem I reaction centre subunit III (PSI_PsaF)Photosystem I reaction centre subunit III- Family
DA [auth cJ],
H [auth aJ],
S [auth bJ]
PF01701Photosystem I reaction centre subunit IX / PsaJ (PSI_PsaJ)Photosystem I reaction centre subunit IX / PsaJ- Family
EA [auth cK],
I [auth aK],
T [auth bK]
PF01241Photosystem I psaG / psaK (PSI_PSAK)Photosystem I psaG / psaK- Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
A [auth aA],
L [auth bA],
W [auth cA]
Photosystem I P700 chlorophyll a apoprotein A1
FA [auth cL],
J [auth aL],
U [auth bL]
Photosystem I protein PsaL-
GA [auth cM],
K [auth aM],
V [auth bM]
Photosystem I protein PsaM---
B [auth aB],
M [auth bB],
X [auth cB]
Photosystem I P700 chlorophyll a apoprotein A2
C [auth aC],
N [auth bC],
Y [auth cC]
Photosystem I iron-sulfur center
D [auth aD],
O [auth bD],
Z [auth cD]
Photosystem I protein PsaD-
AA [auth cE],
E [auth aE],
P [auth bE]
Photosystem I reaction center subunit IV-
BA [auth cF],
F [auth aF],
Q [auth bF]
Photosystem I protein PsaF-
CA [auth cI],
G [auth aI],
R [auth bI]
Photosystem I protein Psa27---
DA [auth cJ],
H [auth aJ],
S [auth bJ]
Photosystem I reaction center subunit IX-
EA [auth cK],
I [auth aK],
T [auth bK]
Photosystem I reaction center subunit PsaK-

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
A [auth aA],
L [auth bA],
W [auth cA]
IPR006243Photosystem I PsaAFamily
A [auth aA],
L [auth bA],
W [auth cA]
IPR036408Photosystem I PsaA/PsaB superfamilyHomologous Superfamily
A [auth aA],
L [auth bA],
W [auth cA]
IPR001280Photosystem I PsaA/PsaBFamily
A [auth aA],
L [auth bA],
W [auth cA]
IPR020586Photosystem I PsaA/PsaB, conserved siteConserved Site
FA [auth cL],
J [auth aL],
U [auth bL]
IPR003757Photosystem I PsaL, reaction centre subunit XIDomain
FA [auth cL],
J [auth aL],
U [auth bL]
IPR022980Photosystem I, reaction centre subunit XIFamily
FA [auth cL],
J [auth aL],
U [auth bL]
IPR036592Photosystem I PsaL, reaction centre subunit XI superfamilyHomologous Superfamily
B [auth aB],
M [auth bB],
X [auth cB]
IPR036408Photosystem I PsaA/PsaB superfamilyHomologous Superfamily
B [auth aB],
M [auth bB],
X [auth cB]
IPR001280Photosystem I PsaA/PsaBFamily
B [auth aB],
M [auth bB],
X [auth cB]
IPR006244Photosystem I PsaBFamily
B [auth aB],
M [auth bB],
X [auth cB]
IPR020586Photosystem I PsaA/PsaB, conserved siteConserved Site
C [auth aC],
N [auth bC],
Y [auth cC]
IPR0179004Fe-4S ferredoxin, iron-sulphur binding, conserved siteConserved Site
C [auth aC],
N [auth bC],
Y [auth cC]
IPR0178964Fe-4S ferredoxin-type, iron-sulphur binding domainDomain
C [auth aC],
N [auth bC],
Y [auth cC]
IPR017491Photosystem I protein PsaCFamily
D [auth aD],
O [auth bD],
Z [auth cD]
IPR003685Photosystem I PsaDFamily
D [auth aD],
O [auth bD],
Z [auth cD]
IPR036579Photosystem I, reaction centre subunit PsaD superfamilyHomologous Superfamily
AA [auth cE],
E [auth aE],
P [auth bE]
IPR008990Electron transport accessory-like domain superfamilyHomologous Superfamily
AA [auth cE],
E [auth aE],
P [auth bE]
IPR003375Photosystem I PsaE, reaction centre subunit IVFamily
BA [auth cF],
F [auth aF],
Q [auth bF]
IPR036577Photosystem I PsaF, reaction centre subunit III superfamilyHomologous Superfamily
BA [auth cF],
F [auth aF],
Q [auth bF]
IPR003666Photosystem I PsaF, reaction centre subunit IIIFamily
DA [auth cJ],
H [auth aJ],
S [auth bJ]
IPR002615Photosystem I PsaJ, reaction centre subunit IXFamily
DA [auth cJ],
H [auth aJ],
S [auth bJ]
IPR036062Photosystem I PsaJ, reaction centre subunit IX superfamilyHomologous Superfamily
EA [auth cK],
I [auth aK],
T [auth bK]
IPR037101Photosystem I reaction centre subunit PsaKHomologous Superfamily
EA [auth cK],
I [auth aK],
T [auth bK]
IPR000549Photosystem I reaction center subunit V/PsaKFamily
EA [auth cK],
I [auth aK],
T [auth bK]
IPR035982Photosystem I reaction centre subunit PsaK superfamilyHomologous Superfamily
EA [auth cK],
I [auth aK],
T [auth bK]
IPR017492Photosystem I reaction center subunit PsaKFamily