7B8R

Doxycycline bound structure of bacterial efflux pump.

External Resource: Annotation


Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
ASCOP2B SuperfamilyMultidrug efflux transporter AcrB pore domain PN1 PN2 PC1 and PC2 subdomains8042523 3000503 SCOP2B (2022-06-29)
ASCOP2B SuperfamilyMultidrug efflux transporter AcrB pore domain PN1 PN2 PC1 and PC2 subdomains8042525 3000503 SCOP2B (2022-06-29)
ASCOP2B SuperfamilyMultidrug efflux transporter AcrB pore domain PN1 PN2 PC1 and PC2 subdomains8042529 3000503 SCOP2B (2022-06-29)
ASCOP2B SuperfamilyMultidrug efflux transporter AcrB pore domain PN1 PN2 PC1 and PC2 subdomains8042528 3000503 SCOP2B (2022-06-29)
ASCOP2B SuperfamilyMultidrug efflux transporter AcrB pore domain PN1 PN2 PC1 and PC2 subdomains8042529 3000503 SCOP2B (2022-06-29)
ASCOP2B SuperfamilyMultidrug efflux transporter AcrB TolC docking domain (DN and DC subdomains)8042531 3000526 SCOP2B (2022-06-29)
ASCOP2B SuperfamilyMultidrug efflux transporter AcrB TolC docking domain (DN and DC subdomains)8042533 3000526 SCOP2B (2022-06-29)
ASCOP2B SuperfamilyMultidrug efflux transporter AcrB pore domain PN1 PN2 PC1 and PC2 subdomains8042525 3000503 SCOP2B (2022-06-29)
BSCOP2B SuperfamilyMultidrug efflux transporter AcrB pore domain PN1 PN2 PC1 and PC2 subdomains8042525 3000503 SCOP2B (2022-06-29)
BSCOP2B SuperfamilyMultidrug efflux transporter AcrB pore domain PN1 PN2 PC1 and PC2 subdomains8042528 3000503 SCOP2B (2022-06-29)
BSCOP2B SuperfamilyMultidrug efflux transporter AcrB pore domain PN1 PN2 PC1 and PC2 subdomains8042529 3000503 SCOP2B (2022-06-29)
BSCOP2B SuperfamilyMultidrug efflux transporter AcrB TolC docking domain (DN and DC subdomains)8042533 3000526 SCOP2B (2022-06-29)
BSCOP2B SuperfamilyMultidrug efflux transporter AcrB pore domain PN1 PN2 PC1 and PC2 subdomains8042529 3000503 SCOP2B (2022-06-29)
BSCOP2B SuperfamilyMultidrug efflux transporter AcrB TolC docking domain (DN and DC subdomains)8042531 3000526 SCOP2B (2022-06-29)
BSCOP2B SuperfamilyMultidrug efflux transporter AcrB pore domain PN1 PN2 PC1 and PC2 subdomains8042523 3000503 SCOP2B (2022-06-29)
BSCOP2B SuperfamilyMultidrug efflux transporter AcrB pore domain PN1 PN2 PC1 and PC2 subdomains8042525 3000503 SCOP2B (2022-06-29)
CSCOP2B SuperfamilyMultidrug efflux transporter AcrB pore domain PN1 PN2 PC1 and PC2 subdomains8042525 3000503 SCOP2B (2022-06-29)
CSCOP2B SuperfamilyMultidrug efflux transporter AcrB TolC docking domain (DN and DC subdomains)8042531 3000526 SCOP2B (2022-06-29)
CSCOP2B SuperfamilyMultidrug efflux transporter AcrB TolC docking domain (DN and DC subdomains)8042533 3000526 SCOP2B (2022-06-29)
CSCOP2B SuperfamilyMultidrug efflux transporter AcrB pore domain PN1 PN2 PC1 and PC2 subdomains8042523 3000503 SCOP2B (2022-06-29)
CSCOP2B SuperfamilyMultidrug efflux transporter AcrB pore domain PN1 PN2 PC1 and PC2 subdomains8042525 3000503 SCOP2B (2022-06-29)
CSCOP2B SuperfamilyMultidrug efflux transporter AcrB pore domain PN1 PN2 PC1 and PC2 subdomains8042528 3000503 SCOP2B (2022-06-29)
CSCOP2B SuperfamilyMultidrug efflux transporter AcrB pore domain PN1 PN2 PC1 and PC2 subdomains8042529 3000503 SCOP2B (2022-06-29)
CSCOP2B SuperfamilyMultidrug efflux transporter AcrB pore domain PN1 PN2 PC1 and PC2 subdomains8042529 3000503 SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
APF00873e7b8rA1 A: a+b two layersX: Alpha-beta plaitsH: Ferredoxin domains in multidrug efflux transporterT: Multidrug efflux transporter AcrB pore domainF: PF00873ECOD (1.6)
APF00873e7b8rA2 A: a+b two layersX: Alpha-beta plaitsH: Ferredoxin domains in multidrug efflux transporterT: Multidrug efflux transporter AcrB TolC docking domainF: PF00873ECOD (1.6)
BPF00873e7b8rB1 A: a+b two layersX: Alpha-beta plaitsH: Ferredoxin domains in multidrug efflux transporterT: Multidrug efflux transporter AcrB pore domainF: PF00873ECOD (1.6)
BPF00873e7b8rB2 A: a+b two layersX: Alpha-beta plaitsH: Ferredoxin domains in multidrug efflux transporterT: Multidrug efflux transporter AcrB TolC docking domainF: PF00873ECOD (1.6)
CPF00873e7b8rC1 A: a+b two layersX: Alpha-beta plaitsH: Ferredoxin domains in multidrug efflux transporterT: Multidrug efflux transporter AcrB pore domainF: PF00873ECOD (1.6)
CPF00873e7b8rC2 A: a+b two layersX: Alpha-beta plaitsH: Ferredoxin domains in multidrug efflux transporterT: Multidrug efflux transporter AcrB TolC docking domainF: PF00873ECOD (1.6)
DPF13637e7b8rD1 A: alpha superhelicesX: Repetitive alpha hairpinsH: Ankyrin repeat (From Topology)T: Ankyrin repeatF: PF13637ECOD (1.6)
EPF13637e7b8rE1 A: alpha superhelicesX: Repetitive alpha hairpinsH: Ankyrin repeat (From Topology)T: Ankyrin repeatF: PF13637ECOD (1.6)
FPF13637e7b8rF1 A: alpha superhelicesX: Repetitive alpha hairpinsH: Ankyrin repeat (From Topology)T: Ankyrin repeatF: PF13637ECOD (1.6)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
A, B, C
PF00873AcrB/AcrD/AcrF family (ACR_tran)AcrB/AcrD/AcrF family- Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
A, B, C
Multidrug efflux pump subunit AcrB,Multidrug efflux pump subunit AcrB
D, E, F
DARPin---

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
A, B, C
IPR001036Acriflavin resistance proteinFamily
A, B, C
IPR004764Multidrug resistance protein MdtF-likeFamily
A, B, C
IPR027463Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomainsHomologous Superfamily

Membrane Protein Annotation: mpstruc mpstruc Database Homepage

ChainsResource LinkGroupSubgroupProtein
A, B, C
mpstrucTRANSMEMBRANE PROTEINS: ALPHA-HELICALMulti-Drug Efflux TransportersAcrB bacterial multi-drug efflux transporter with bound doxycycline