6OGD
Cryo-EM structure of YenTcA in its prepore state
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
C | F_UNCLASSIFIED | e6ogdC1 | A: a+b two layers | X: FKBP-like | H: Chitinase insertion domain (From Topology) | T: Chitinase insertion domain | F: F_UNCLASSIFIED | ECOD (1.6) |
C | PF00704 | e6ogdC2 | A: a/b barrels | X: TIM beta/alpha-barrel | H: TIM barrels (From Topology) | T: TIM barrels | F: PF00704 | ECOD (1.6) |
F | F_UNCLASSIFIED | e6ogdF2 | A: a+b two layers | X: FKBP-like | H: Chitinase insertion domain (From Topology) | T: Chitinase insertion domain | F: F_UNCLASSIFIED | ECOD (1.6) |
F | PF00704 | e6ogdF1 | A: a/b barrels | X: TIM beta/alpha-barrel | H: TIM barrels (From Topology) | T: TIM barrels | F: PF00704 | ECOD (1.6) |
I | F_UNCLASSIFIED | e6ogdI1 | A: a+b two layers | X: FKBP-like | H: Chitinase insertion domain (From Topology) | T: Chitinase insertion domain | F: F_UNCLASSIFIED | ECOD (1.6) |
I | PF00704 | e6ogdI2 | A: a/b barrels | X: TIM beta/alpha-barrel | H: TIM barrels (From Topology) | T: TIM barrels | F: PF00704 | ECOD (1.6) |
L | F_UNCLASSIFIED | e6ogdL1 | A: a+b two layers | X: FKBP-like | H: Chitinase insertion domain (From Topology) | T: Chitinase insertion domain | F: F_UNCLASSIFIED | ECOD (1.6) |
L | PF00704 | e6ogdL2 | A: a/b barrels | X: TIM beta/alpha-barrel | H: TIM barrels (From Topology) | T: TIM barrels | F: PF00704 | ECOD (1.6) |
O | F_UNCLASSIFIED | e6ogdO1 | A: a+b two layers | X: FKBP-like | H: Chitinase insertion domain (From Topology) | T: Chitinase insertion domain | F: F_UNCLASSIFIED | ECOD (1.6) |
O | PF00704 | e6ogdO2 | A: a/b barrels | X: TIM beta/alpha-barrel | H: TIM barrels (From Topology) | T: TIM barrels | F: PF00704 | ECOD (1.6) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF20220 | ABC toxin N-terminal region (ABC_toxin_N) | ABC toxin N-terminal region | - | Family | |
PF18276 | Tc toxin complex TcA C-terminal TcB-binding domain (TcA_TcB_BD) | Tc toxin complex TcA C-terminal TcB-binding domain | This domain is found in the C-terminal region of the Tc toxin TcA, present in Photorhabdus luminescens. Tc Toxin complexes bind to the cell surface, are endocytosed and perforate the host endosomal membrane by forming channels that translocate toxic ... | Domain | |
PF18413 | Neuraminidase-like domain (Neuraminidase) | Neuraminidase-like domain | - | Repeat | |
PF00704 | Glycosyl hydrolases family 18 (Glyco_hydro_18) | Glycosyl hydrolases family 18 | - | Domain |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
IPR018003 | Insecticidal toxin complex/plasmid virulence protein | Family | |
IPR041079 | Neuraminidase-like domain | Domain | |
IPR040840 | Tc toxin complex TcA, C-terminal TcB-binding domain | Domain | |
IPR046839 | ABC toxin, N-terminal domain | Domain | |
IPR011583 | Chitinase II | Domain | |
IPR029070 | Chitinase insertion domain superfamily | Homologous Superfamily | |
IPR017853 | Glycoside hydrolase superfamily | Homologous Superfamily | |
IPR001223 | Glycoside hydrolase family 18, catalytic domain | Domain |