6Z3M

Repulsive Guidance Molecule B (RGMB) in complex with Growth Differentiation Factor 5 (GDF5) and Neogenin 1 (NEO1).


Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
ASCOP2B SuperfamilyCystine-knot cytokines8070313 3000846 SCOP2B (2022-06-29)
BSCOP2B SuperfamilyCystine-knot cytokines8070313 3000846 SCOP2B (2022-06-29)
GSCOP2B SuperfamilyCystine-knot cytokines8070313 3000846 SCOP2B (2022-06-29)
HSCOP2B SuperfamilyCystine-knot cytokines8070313 3000846 SCOP2B (2022-06-29)
MSCOP2B SuperfamilyCystine-knot cytokines8070313 3000846 SCOP2B (2022-06-29)
NSCOP2B SuperfamilyCystine-knot cytokines8070313 3000846 SCOP2B (2022-06-29)
CSCOP2B SuperfamilyRGM family N-terminal helical domain8107356 3002873 SCOP2B (2022-06-29)
DSCOP2B SuperfamilyRGM family N-terminal helical domain8107356 3002873 SCOP2B (2022-06-29)
ISCOP2B SuperfamilyRGM family N-terminal helical domain8107356 3002873 SCOP2B (2022-06-29)
JSCOP2B SuperfamilyRGM family N-terminal helical domain8107356 3002873 SCOP2B (2022-06-29)
OSCOP2B SuperfamilyRGM family N-terminal helical domain8107356 3002873 SCOP2B (2022-06-29)
PSCOP2B SuperfamilyRGM family N-terminal helical domain8107356 3002873 SCOP2B (2022-06-29)
S [auth c]SCOP2B Superfamilyvon Willebrand factor type D domain-like8107357 3002872 SCOP2B (2022-06-29)
T [auth d]SCOP2B Superfamilyvon Willebrand factor type D domain-like8107357 3002872 SCOP2B (2022-06-29)
V [auth j]SCOP2B Superfamilyvon Willebrand factor type D domain-like8107357 3002872 SCOP2B (2022-06-29)
W [auth o]SCOP2B Superfamilyvon Willebrand factor type D domain-like8107357 3002872 SCOP2B (2022-06-29)
X [auth p]SCOP2B Superfamilyvon Willebrand factor type D domain-like8107357 3002872 SCOP2B (2022-06-29)
U [auth i]SCOP2B Superfamilyvon Willebrand factor type D domain-like8107357 3002872 SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
APF00019e6z3mA1 A: few secondary structure elementsX: Cystine-knot cytokines (From Topology)H: Cystine-knot cytokines (From Topology)T: Cystine-knot cytokinesF: PF00019ECOD (1.6)
BPF00019e6z3mB1 A: few secondary structure elementsX: Cystine-knot cytokines (From Topology)H: Cystine-knot cytokines (From Topology)T: Cystine-knot cytokinesF: PF00019ECOD (1.6)
GPF00019e6z3mG1 A: few secondary structure elementsX: Cystine-knot cytokines (From Topology)H: Cystine-knot cytokines (From Topology)T: Cystine-knot cytokinesF: PF00019ECOD (1.6)
HPF00019e6z3mH1 A: few secondary structure elementsX: Cystine-knot cytokines (From Topology)H: Cystine-knot cytokines (From Topology)T: Cystine-knot cytokinesF: PF00019ECOD (1.6)
MPF00019e6z3mM1 A: few secondary structure elementsX: Cystine-knot cytokines (From Topology)H: Cystine-knot cytokines (From Topology)T: Cystine-knot cytokinesF: PF00019ECOD (1.6)
NPF00019e6z3mN1 A: few secondary structure elementsX: Cystine-knot cytokines (From Topology)H: Cystine-knot cytokines (From Topology)T: Cystine-knot cytokinesF: PF00019ECOD (1.6)
CPF06535e6z3mC1 A: alpha bundlesX: Spectrin repeat-likeH: Repulsive guidance molecule (RGM) N-terminal domain (From Topology)T: Repulsive guidance molecule (RGM) N-terminal domainF: PF06535ECOD (1.6)
DPF06535e6z3mD1 A: alpha bundlesX: Spectrin repeat-likeH: Repulsive guidance molecule (RGM) N-terminal domain (From Topology)T: Repulsive guidance molecule (RGM) N-terminal domainF: PF06535ECOD (1.6)
IPF06535e6z3mI1 A: alpha bundlesX: Spectrin repeat-likeH: Repulsive guidance molecule (RGM) N-terminal domain (From Topology)T: Repulsive guidance molecule (RGM) N-terminal domainF: PF06535ECOD (1.6)
JPF06535e6z3mJ1 A: alpha bundlesX: Spectrin repeat-likeH: Repulsive guidance molecule (RGM) N-terminal domain (From Topology)T: Repulsive guidance molecule (RGM) N-terminal domainF: PF06535ECOD (1.6)
OPF06535e6z3mO1 A: alpha bundlesX: Spectrin repeat-likeH: Repulsive guidance molecule (RGM) N-terminal domain (From Topology)T: Repulsive guidance molecule (RGM) N-terminal domainF: PF06535ECOD (1.6)
PPF06535e6z3mP1 A: alpha bundlesX: Spectrin repeat-likeH: Repulsive guidance molecule (RGM) N-terminal domain (From Topology)T: Repulsive guidance molecule (RGM) N-terminal domainF: PF06535ECOD (1.6)
S [auth c]PF06534,PF06535e6z3mc1 A: beta barrelsX: Repulsive guidance molecule (RGM) family (From Topology)H: Repulsive guidance molecule (RGM) family (From Topology)T: Repulsive guidance molecule (RGM) familyF: PF06534,PF06535ECOD (1.6)
T [auth d]PF06534,PF06535e6z3md1 A: beta barrelsX: Repulsive guidance molecule (RGM) family (From Topology)H: Repulsive guidance molecule (RGM) family (From Topology)T: Repulsive guidance molecule (RGM) familyF: PF06534,PF06535ECOD (1.6)
V [auth j]PF06534,PF06535e6z3mj1 A: beta barrelsX: Repulsive guidance molecule (RGM) family (From Topology)H: Repulsive guidance molecule (RGM) family (From Topology)T: Repulsive guidance molecule (RGM) familyF: PF06534,PF06535ECOD (1.6)
W [auth o]PF06534,PF06535e6z3mo1 A: beta barrelsX: Repulsive guidance molecule (RGM) family (From Topology)H: Repulsive guidance molecule (RGM) family (From Topology)T: Repulsive guidance molecule (RGM) familyF: PF06534,PF06535ECOD (1.6)
X [auth p]PF06534,PF06535e6z3mp1 A: beta barrelsX: Repulsive guidance molecule (RGM) family (From Topology)H: Repulsive guidance molecule (RGM) family (From Topology)T: Repulsive guidance molecule (RGM) familyF: PF06534,PF06535ECOD (1.6)
U [auth i]PF06534,PF06535e6z3mi1 A: beta barrelsX: Repulsive guidance molecule (RGM) family (From Topology)H: Repulsive guidance molecule (RGM) family (From Topology)T: Repulsive guidance molecule (RGM) familyF: PF06534,PF06535ECOD (1.6)
EPF00041e6z3mE2 A: beta sandwichesX: Immunoglobulin-like beta-sandwichH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: PF00041ECOD (1.6)
KPF00041e6z3mK2 A: beta sandwichesX: Immunoglobulin-like beta-sandwichH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: PF00041ECOD (1.6)
LPF00041e6z3mL1 A: beta sandwichesX: Immunoglobulin-like beta-sandwichH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: PF00041ECOD (1.6)
QPF00041e6z3mQ1 A: beta sandwichesX: Immunoglobulin-like beta-sandwichH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: PF00041ECOD (1.6)
RPF00041e6z3mR1 A: beta sandwichesX: Immunoglobulin-like beta-sandwichH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: PF00041ECOD (1.6)
FPF00041e6z3mF2 A: beta sandwichesX: Immunoglobulin-like beta-sandwichH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: PF00041ECOD (1.6)

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
A, B, G, H, M
Growth/differentiation factor 5
RGM domain family member B
E, F, K, L, Q
Neogenin

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
A, B, G, H, M
IPR029034Cystine-knot cytokineHomologous Superfamily
A, B, G, H, M
IPR015615Transforming growth factor-beta-relatedFamily
A, B, G, H, M
IPR017948Transforming growth factor beta, conserved siteConserved Site
A, B, G, H, M
IPR001111TGF-beta, propeptideDomain
A, B, G, H, M
IPR001839Transforming growth factor-beta, C-terminalDomain
IPR010536Repulsive guidance molecule, N-terminalDomain
IPR009496Repulsive guidance molecule, C-terminalDomain
IPR040287Repulsive guidance moleculeFamily
E, F, K, L, Q
IPR010560Neogenin, C-terminalDomain
E, F, K, L, Q
IPR036179Immunoglobulin-like domain superfamilyHomologous Superfamily
E, F, K, L, Q
IPR003599Immunoglobulin subtypeDomain
E, F, K, L, Q
IPR003598Immunoglobulin subtype 2Domain
E, F, K, L, Q
IPR013098Immunoglobulin I-setDomain
E, F, K, L, Q
IPR003961Fibronectin type IIIDomain
E, F, K, L, Q
IPR013783Immunoglobulin-like foldHomologous Superfamily
E, F, K, L, Q
IPR007110Immunoglobulin-like domainDomain
E, F, K, L, Q
IPR036116Fibronectin type III superfamilyHomologous Superfamily

Pharos: Disease Associations Pharos Homepage Annotation

ChainsDrug Target  Associated Disease
A, B, G, H, M
PharosP43026
PharosQ6NW40