6YWV

The structure of the Atp25 bound assembly intermediate of the mitoribosome from Neurospora crassa


Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
J [auth I]SCOP2 FamilyRibosomal protein L148101688 4001826 SCOP2 (2022-06-29)
J [auth I]SCOP2 Superfamily50S Ribosomal protein L14-like8101689 3000433 SCOP2 (2022-06-29)
Y [auth X]SCOP2B SuperfamilyZn-binding ribosomal proteins8101773 3001320 SCOP2B (2022-06-29)
AA [auth 0]SCOP2 FamilyRibosomal protein L368101684 4003715 SCOP2 (2022-06-29)
AA [auth 0]SCOP2 SuperfamilyRibosomal protein L368101685 3001346 SCOP2 (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
J [auth I]PF00238e6ywvI1 A: beta barrelsX: Ribosomal protein L14-likeH: Ribosomal protein L14-related (From Topology)T: Ribosomal protein L14-relatedF: PF00238ECOD (1.6)
K [auth J]PF00828e6ywvJ1 A: a/b three-layered sandwichesX: Ribosomal protein L13/L15p/L18e/L32eH: Ribosomal proteins L15p and L18e (From Topology)T: Ribosomal proteins L15p and L18eF: PF00828ECOD (1.6)
L [auth K]PF00252e6ywvK1 A: a+b complex topologyX: alpha/beta-Hammerhead/Barrel-sandwich hybridH: alpha/beta-Hammerhead/Barrel-sandwich hybridT: Ribosomal protein L10eF: PF00252ECOD (1.6)
O [auth N]PF00829e6ywvN1 A: beta barrelsX: Ribosomal protein L21p (From Topology)H: Ribosomal protein L21p (From Topology)T: Ribosomal protein L21pF: PF00829ECOD (1.6)
BPF00181e6ywvB1 A: beta barrelsX: OB-foldH: Nucleic acid-binding proteins (From Topology)T: Nucleic acid-binding proteinsF: PF00181ECOD (1.6)
BPF03947e6ywvB2 A: beta barrelsX: SH3H: SH3T: SH3F: PF03947ECOD (1.6)
V [auth U]PF00327e6ywvU1 A: a+b two layersX: Ribosomal protein L30p/L7e (From Topology)H: Ribosomal protein L30p/L7e (From Topology)T: Ribosomal protein L30p/L7eF: PF00327ECOD (1.6)
W [auth V]PF21492e6ywvV1 A: few secondary structure elementsX: Ribosomal protein L31p (From Topology)H: Ribosomal protein L31p (From Topology)T: Ribosomal protein L31pF: PF21492ECOD (1.6)
X [auth W]PF01783e6ywvW1 A: few secondary structure elementsX: Rubredoxin-likeH: Rubredoxin-relatedT: Rubredoxin-relatedF: PF01783ECOD (1.6)
Y [auth X]PF00471e6ywvX1 A: few secondary structure elementsX: Rubredoxin-likeH: Rubredoxin-relatedT: Rubredoxin-relatedF: PF00471ECOD (1.6)
Z [auth Y]PF00468e6ywvY1 A: extended segmentsX: 50S ribosomal protein L34 (From Topology)H: 50S ribosomal protein L34 (From Topology)T: 50S ribosomal protein L34F: PF00468ECOD (1.6)
AA [auth 0]PF00444e6ywv01 A: few secondary structure elementsX: Ribosomal protein L36 (From Topology)H: Ribosomal protein L36 (From Topology)T: Ribosomal protein L36F: PF00444ECOD (1.6)
CA [auth 2]F_UNCLASSIFIEDe6ywv21 A: extended segmentsX: Mitochondrial 54S ribosomal protein L28 (From Topology)H: Mitochondrial 54S ribosomal protein L28 (From Topology)T: Mitochondrial 54S ribosomal protein L28F: F_UNCLASSIFIEDECOD (1.6)
DA [auth 3]PF09809e6ywv31 A: extended segmentsX: Mitochondrial 54S ribosomal protein L27 (From Topology)H: Mitochondrial 54S ribosomal protein L27 (From Topology)T: Mitochondrial 54S ribosomal protein L27F: PF09809ECOD (1.6)
EA [auth 4]PF05047e6ywv41 A: a+b three layersX: Thioredoxin-likeH: Thioredoxin-like (From Topology)T: Thioredoxin-likeF: PF05047ECOD (1.6)
FA [auth 5]F_UNCLASSIFIEDe6ywv51 A: alpha arraysX: RNase III catalytic domain-like (From Topology)H: RNase III catalytic domain-like (From Topology)T: RNase III catalytic domain-likeF: F_UNCLASSIFIEDECOD (1.6)
FA [auth 5]PF00035e6ywv52 A: a+b two layersX: dsRBD-likeH: dsRNA-binding domain-like (From Topology)T: dsRNA-binding domain-likeF: PF00035ECOD (1.6)
GA [auth 6]PF00293,PF11788e6ywv61 A: a+b two layersX: beta-GraspH: Nudix (From Topology)T: NudixF: PF00293,PF11788ECOD (1.6)
HA [auth 7]PF05046e6ywv71 A: a+b two layersX: Glucose permease domain IIB-likeH: eIF1-like (From Topology)T: eIF1-likeF: PF05046ECOD (1.6)
JA [auth h]PF10780e6ywvh1 A: a+b three layersX: Thioredoxin-likeH: Thioredoxin-like (From Topology)T: Thioredoxin-likeF: PF10780ECOD (1.6)
LA [auth 9]PF14622e6ywv91 A: alpha arraysX: RNase III catalytic domain-like (From Topology)H: RNase III catalytic domain-like (From Topology)T: RNase III catalytic domain-likeF: PF14622ECOD (1.6)
MA [auth a]PF12824e6ywva1 A: alpha arraysX: HTHH: HTHT: tri-helicalF: PF12824ECOD (1.6)
DPF00573e6ywvD1 A: a/b three-layered sandwichesX: Ribosomal protein L4 (From Topology)H: Ribosomal protein L4 (From Topology)T: Ribosomal protein L4F: PF00573ECOD (1.6)
NA [auth b]PF18126e6ywvb1 A: extended segmentsX: Mitochondrial 54S ribosomal protein L25 (From Topology)H: Mitochondrial 54S ribosomal protein L25 (From Topology)T: Mitochondrial 54S ribosomal protein L25F: PF18126ECOD (1.6)
OA [auth c]PF09784e6ywvc1 A: extended segmentsX: Mitochondrial 54S ribosomal protein L31 (From Topology)H: Mitochondrial 54S ribosomal protein L31 (From Topology)T: Mitochondrial 54S ribosomal protein L31F: PF09784ECOD (1.6)
PA [auth d]PF12829e6ywvd1 A: a+b three layersX: Mitochondrial homologous recombination protein 1 (From Topology)H: Mitochondrial homologous recombination protein 1 (From Topology)T: Mitochondrial homologous recombination protein 1F: PF12829ECOD (1.6)
QA [auth n]PF02410e6ywvn1 A: a+b three layersX: Nucleotidyltransferase-likeH: Nucleotidyltransferase (From Topology)T: NucleotidyltransferaseF: PF02410ECOD (1.6)
FF_UNCLASSIFIEDe6ywvF2 A: a+b two layersX: Ribosomal protein L6 (From Topology)H: Ribosomal protein L6 (From Topology)T: Ribosomal protein L6F: F_UNCLASSIFIEDECOD (1.6)
FPF00347e6ywvF1 A: a+b two layersX: Ribosomal protein L6 (From Topology)H: Ribosomal protein L6 (From Topology)T: Ribosomal protein L6F: PF00347ECOD (1.6)
H [auth g]PF00298e6ywvg1 A: alpha arraysX: HTHH: HTHT: Ribosomal protein L11, C-terminal domainF: PF00298ECOD (1.6)
H [auth g]PF03946e6ywvg2 A: a+b two layersX: Ribosomal protein L11/L12e N-terminal domain-likeH: Ribosomal protein L11/L12e N-terminal domain (From Topology)T: Ribosomal protein L11/L12e N-terminal domainF: PF03946ECOD (1.6)
I [auth H]PF00572e6ywvH1 A: a/b three-layered sandwichesX: Ribosomal protein L13/L15p/L18e/L32eH: Ribosomal protein L13 and L16-A (From Topology)T: Ribosomal protein L13 and L16-AF: PF00572ECOD (1.6)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
J [auth I]PF00238Ribosomal protein L14p/L23e (Ribosomal_L14)Ribosomal protein L14p/L23e- Domain
K [auth J]PF00828Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A (Ribosomal_L27A)Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A- Family
L [auth K]PF00252Ribosomal protein L16p/L10e (Ribosomal_L16)Ribosomal protein L16p/L10e- Domain
M [auth L]PF01196Ribosomal protein L17 (Ribosomal_L17)Ribosomal protein L17- Family
N [auth M]PF01245Ribosomal protein L19 (Ribosomal_L19)Ribosomal protein L19- Family
O [auth N]PF00829Ribosomal prokaryotic L21 protein (Ribosomal_L21p)Ribosomal prokaryotic L21 protein- Family
P [auth O]PF00237Ribosomal protein L22p/L17e (Ribosomal_L22)Ribosomal protein L22p/L17eThis family includes L22 from prokaryotes and chloroplasts and L17 from eukaryotes.Domain
Q [auth P]PF00276Ribosomal protein L23 (Ribosomal_L23)Ribosomal protein L23- Family
R [auth Q]PF00467KOW motif (KOW)KOW motif- Family
S [auth R]PF01016Ribosomal L27 protein (Ribosomal_L27)Ribosomal L27 protein- Family
PF03947Ribosomal Proteins L2, C-terminal domain (Ribosomal_L2_C)Ribosomal Proteins L2, C-terminal domain- Domain
PF00181Ribosomal Proteins L2, RNA binding domain (Ribosomal_L2)Ribosomal Proteins L2, RNA binding domain- Domain
T [auth S]PF00830Ribosomal L28 family (Ribosomal_L28)Ribosomal L28 family- Family
U [auth T]PF06984Mitochondrial 39-S ribosomal protein L47 (MRP-L47) (MRP-L47)Mitochondrial 39-S ribosomal protein L47 (MRP-L47)- Family
V [auth U]PF00327Ribosomal protein L30p/L7e (Ribosomal_L30)Ribosomal protein L30p/L7eThis family includes prokaryotic L30 and eukaryotic L7.Domain
W [auth V]PF21492Ribosomal protein L31p, N-terminal (bL31_N)Ribosomal protein L31p, N-terminalRibosomal protein L31p (bL31, also known as 54S ribosomal protein L36), is a component of the mitochondrial ribosome. Overexpression of bL31m suppresses mutations in the COX2 leader peptide-encoding and initiation codon regions [1,2]. This entry repr ...Ribosomal protein L31p (bL31, also known as 54S ribosomal protein L36), is a component of the mitochondrial ribosome. Overexpression of bL31m suppresses mutations in the COX2 leader peptide-encoding and initiation codon regions [1,2]. This entry represents the N-terminal domain of yeast bL31 [3].
Domain
X [auth W]PF01783Ribosomal L32p protein family (Ribosomal_L32p)Ribosomal L32p protein family- Family
Y [auth X]PF00471Ribosomal protein L33 (Ribosomal_L33)Ribosomal protein L33- Family
Z [auth Y]PF00468Ribosomal protein L34 (Ribosomal_L34)Ribosomal protein L34- Family
AA [auth 0]PF00444Ribosomal protein L36 (Ribosomal_L36)Ribosomal protein L36- Domain
BA [auth 1]PF01161Phosphatidylethanolamine-binding protein (PBP)Phosphatidylethanolamine-binding protein- Domain
PF00297Ribosomal protein L3 (Ribosomal_L3)Ribosomal protein L3- Family
DA [auth 3]PF09809Mitochondrial ribosomal protein L27 (MRP-L27)Mitochondrial ribosomal protein L27- Family
EA [auth 4]PF05047Mitochondrial ribosomal protein L51 / S25 / CI-B8 domain (L51_S25_CI-B8)Mitochondrial ribosomal protein L51 / S25 / CI-B8 domainThe proteins in this family are located in the mitochondrion. The family includes ribosomal protein L51, and S25. This family also includes mitochondrial NADH-ubiquinone oxidoreductase B8 subunit (CI-B8) EC:1.6.5.3. It is not known whether all member ...The proteins in this family are located in the mitochondrion. The family includes ribosomal protein L51, and S25. This family also includes mitochondrial NADH-ubiquinone oxidoreductase B8 subunit (CI-B8) EC:1.6.5.3. It is not known whether all members of this family form part of the NADH-ubiquinone oxidoreductase and whether they are also all ribosomal proteins. Structurally related to thioredoxin-fold.
Domain
FA [auth 5]PF00035Double-stranded RNA binding motif (dsrm)Double-stranded RNA binding motifSequences gathered for seed by HMM_iterative_training Putative motif shared by proteins that bind to dsRNA. At least some DSRM proteins seem to bind to specific RNA targets. Exemplified by Staufen, which is involved in localisation of at least five d ...Sequences gathered for seed by HMM_iterative_training Putative motif shared by proteins that bind to dsRNA. At least some DSRM proteins seem to bind to specific RNA targets. Exemplified by Staufen, which is involved in localisation of at least five different mRNAs in the early Drosophila embryo. Also by interferon-induced protein kinase in humans, which is part of the cellular response to dsRNA.
Domain
GA [auth 6]PF00293NUDIX domain (NUDIX)NUDIX domain- Domain
GA [auth 6]PF1178839S mitochondrial ribosomal protein L46 (MRP-L46)39S mitochondrial ribosomal protein L46- Family
HA [auth 7]PF05046Mitochondrial large subunit ribosomal protein (Img2) (Img2)Mitochondrial large subunit ribosomal protein (Img2)This family of proteins have been identified as part of the mitochondrial large ribosomal subunit in yeast [1].Domain
IA [auth 8]PF10501Ribosomal subunit 39S (Ribosomal_L50)Ribosomal subunit 39SThe 39S ribosomal protein appears to be a subunit of one of the larger mitochondrial 66S or 70S units [1]. Under conditions of ethanol-stress in rats the larger subunit is largely dissociated into its smaller components [2]. In E. coli, in the absenc ...The 39S ribosomal protein appears to be a subunit of one of the larger mitochondrial 66S or 70S units [1]. Under conditions of ethanol-stress in rats the larger subunit is largely dissociated into its smaller components [2]. In E. coli, in the absence of the enzyme pseudouridine synthase (RluD) synthase, there is an accumulation of 50S and 30S subunits and the appearance of abnormal particles (62S and 39S), with concomitant loss of 70S ribosomes [2].
Domain
JA [auth h]PF1078039S ribosomal protein L53/MRP-L53 (MRP_L53)39S ribosomal protein L53/MRP-L53- Family
KA [auth i]PF08561Mitochondrial ribosomal protein L37 (Ribosomal_L37)Mitochondrial ribosomal protein L37- Family
LA [auth 9]PF14622Ribonuclease-III-like (Ribonucleas_3_3)Ribonuclease-III-like- Family
MA [auth a]PF12824Mitochondrial ribosomal protein subunit L20 (MRP-L20)Mitochondrial ribosomal protein subunit L20This family is the essential mitochondrial ribosomal protein subunit L20 of fungi.Domain
PF00573Ribosomal protein L4/L1 family (Ribosomal_L4)Ribosomal protein L4/L1 family- Family
NA [auth b]PF18126Mitochondrial ribosomal protein mL59 (Mitoc_mL59)Mitochondrial ribosomal protein mL59This domain is a protein found in mitochondrial ribosome 54S large sub unit present in species such as Saccharomyces cerevisiae. The domain used to be referred to as MRP25 but is now called mL59 protein. mL59 is known to partially stabilize a change ...This domain is a protein found in mitochondrial ribosome 54S large sub unit present in species such as Saccharomyces cerevisiae. The domain used to be referred to as MRP25 but is now called mL59 protein. mL59 is known to partially stabilize a change in the rRNA path prior to helix 82-ES1 ultimately leading to the stabilization of the phosphate backbone of the tRNA acceptor stem. It is worth noting that the domain is encoded in the nucleus and imported from the cytoplasm [1].
Domain
OA [auth c]PF09784Mitochondrial ribosomal protein L31 (L31)Mitochondrial ribosomal protein L31- Family
PA [auth d]PF12829Transcriptional regulation of mitochondrial recombination (Mhr1)Transcriptional regulation of mitochondrial recombination- Family
PF00673ribosomal L5P family C-terminus (Ribosomal_L5_C)ribosomal L5P family C-terminusThis region is found associated with Pfam:PF00281.Domain
PF00347Ribosomal protein L6 (Ribosomal_L6)Ribosomal protein L6- Domain
H [auth g]PF03946Ribosomal protein L11, N-terminal domain (Ribosomal_L11_N)Ribosomal protein L11, N-terminal domainThe N-terminal domain of Ribosomal protein L11 adopts an alpha/beta fold and is followed by the RNA binding C-terminal domain.Domain
H [auth g]PF00298Ribosomal protein L11, RNA binding domain (Ribosomal_L11)Ribosomal protein L11, RNA binding domain- Domain
I [auth H]PF00572Ribosomal protein L13 (Ribosomal_L13)Ribosomal protein L13- Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
23 S rRNA---
J [auth I]50S ribosomal protein L14
K [auth J]50S ribosomal subunit protein L15
L [auth K]60S ribosomal protein L16
M [auth L]50S ribosomal protein L17
N [auth M]Mitochondrial ribosomal protein
O [auth N]Aconitate hydratase -
P [auth O]Mitochondrial large ribosomal subunit
Q [auth P]Mitochondrial ribosomal protein subunit L23
R [auth Q]KOW domain-containing protein
S [auth R]Uncharacterized protein
60S ribosomal protein L2
T [auth S]50S ribosomal protein L24 -
U [auth T]54S ribosomal protein L4, mitochondrial
V [auth U]50S ribosomal protein L30
W [auth V]Uncharacterized protein
X [auth W]Mitochondrial ribosomal protein subunit L32
Y [auth X]Uncharacterized protein
Z [auth Y]Uncharacterized protein
AA [auth 0]Ribosomal protein
BA [auth 1]Mitochondrial large ribosomal subunit YmL35- -
CA [auth 2]Uncharacterized protein
60S ribosomal protein L3
DA [auth 3]Uncharacterized protein
EA [auth 4]Mitochondrial ribosomal protein L43
FA [auth 5]60S ribosomal protein L3
GA [auth 6]50S ribosomal subunit L30 -
HA [auth 7]Uncharacterized protein
IA [auth 8]Uncharacterized protein- -
JA [auth h]Mitochondrial ribosomal protein L44 -
KA [auth i]Uncharacterized protein -
LA [auth 9]RNase III domain-containing protein
MA [auth a]60S ribosomal protein L20 -
60S ribosomal protein L4, variant
NA [auth b]Mitochondrial 60S ribosomal protein L25 -
OA [auth c]54S ribosomal protein L31, mitochondrial -
PA [auth d]Uncharacterized protein
QA [auth n]ATPase synthesis protein 25, mitochondrial-
50S ribosomal protein L5
60S ribosomal protein L6
G [auth f]Uncharacterized protein
H [auth g]60S ribosomal protein L19
I [auth H]Ribosomal protein L13

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
J [auth I]IPR005745Large ribosomal subunit protein uL14, bacterial-typeFamily
J [auth I]IPR036853Large ribosomal subunit protein uL14 superfamilyHomologous Superfamily
J [auth I]IPR000218Large ribosomal subunit protein uL14Family
J [auth I]IPR019972Large ribosomal subunit protein uL14, conserved siteConserved Site
K [auth J]IPR005749Large ribosomal subunit protein uL15, bacterial-typeFamily
K [auth J]IPR021131Large ribosomal subunit protein uL15/eL18Domain
K [auth J]IPR030878Large ribosomal subunit protein uL15Family
K [auth J]IPR036227Large ribosomal subunit protein uL15/eL18 superfamilyHomologous Superfamily
L [auth K]IPR036920Large ribosomal subunit protein uL16 superfamilyHomologous Superfamily
L [auth K]IPR020798Large ribosomal subunit protein uL16, conserved siteConserved Site
L [auth K]IPR000114Large ribosomal subunit protein uL16, bacterial-typeFamily
L [auth K]IPR016180Large ribosomal subunit protein uL16 domainDomain
L [auth K]IPR047873Large ribosomal subunit protein uL16Family
M [auth L]IPR036373Large ribosomal subunit protein bL17 superfamilyHomologous Superfamily
M [auth L]IPR047859Large ribosomal subunit protein bL17, conserved siteConserved Site
M [auth L]IPR000456Large ribosomal subunit protein bL17Family
N [auth M]IPR001857Large ribosomal subunit protein bL19Family
N [auth M]IPR038657Large ribosomal subunit protein bL19 superfamilyHomologous Superfamily
N [auth M]IPR008991Translation protein SH3-like domain superfamilyHomologous Superfamily
O [auth N]IPR028909Large ribosomal subunit protein bL21-likeFamily
O [auth N]IPR036164Large ribosomal subunit protein bL21-like superfamilyHomologous Superfamily
P [auth O]IPR047867Large ribosomal subunit protein uL22, bacterial/organelle-typeFamily
P [auth O]IPR036394Ribosomal protein uL22 superfamilyHomologous Superfamily
P [auth O]IPR001063Large ribosomal subunit protein uL22Family
Q [auth P]IPR012678Ribosomal protein uL23/eL15/eS24 core domain superfamilyHomologous Superfamily
Q [auth P]IPR012677Nucleotide-binding alpha-beta plait domain superfamilyHomologous Superfamily
Q [auth P]IPR013025Large ribosomal subunit protein uL23-likeFamily
R [auth Q]IPR003256Large ribosomal subunit protein uL24Family
R [auth Q]IPR014722Large ribosomal subunit protein uL2, domain 2Homologous Superfamily
R [auth Q]IPR005824KOWDomain
R [auth Q]IPR008991Translation protein SH3-like domain superfamilyHomologous Superfamily
S [auth R]IPR001684Large ribosomal subunit protein bL27Family
IPR022669Large ribosomal subunit protein uL2, C-terminalDomain
IPR014722Large ribosomal subunit protein uL2, domain 2Homologous Superfamily
IPR008991Translation protein SH3-like domain superfamilyHomologous Superfamily
IPR005880Large ribosomal subunit protein uL2, bacterial/organellar-typeFamily
IPR012340Nucleic acid-binding, OB-foldHomologous Superfamily
IPR022666Large ribosomal subunit protein uL2, RNA-binding domainDomain
IPR014726Large ribosomal subunit protein uL2, domain 3Homologous Superfamily
IPR002171Large ribosomal subunit protein uL2Family
T [auth S]IPR037147Large ribosomal subunit protein bL28 superfamilyHomologous Superfamily
T [auth S]IPR026569Large ribosomal subunit protein bL28Family
T [auth S]IPR034704Large ribosomal subunit protein bL28/bL31-like superfamilyHomologous Superfamily
U [auth T]IPR038340MRP-L47 superfamily, mitochondrialHomologous Superfamily
U [auth T]IPR010729Large ribosomal subunit protein uL29m, mitochondrialFamily
V [auth U]IPR036919Large ribosomal subunit protein uL30, ferredoxin-like fold domain superfamilyHomologous Superfamily
V [auth U]IPR005996Large ribosomal subunit protein uL30, bacterial-typeFamily
V [auth U]IPR016082Large ribosomal subunit protein uL30-like, ferredoxin-like fold domainDomain
V [auth U]IPR018038Large ribosomal subunit protein uL30, conserved siteConserved Site
W [auth V]IPR034600Large ribosomal subunit protein bL31mFamily
W [auth V]IPR048874Ribosomal protein bL31m, N-terminal domainDomain
X [auth W]IPR002677Large ribosomal subunit protein bL32Family
X [auth W]IPR011332Zinc-binding ribosomal proteinHomologous Superfamily
Y [auth X]IPR011332Zinc-binding ribosomal proteinHomologous Superfamily
Y [auth X]IPR038584Large ribosomal subunit protein bL33 superfamilyHomologous Superfamily
Y [auth X]IPR001705Large ribosomal subunit protein bL33Family
Z [auth Y]IPR000271Large ribosomal subunit protein bL34Family
AA [auth 0]IPR000473Large ribosomal subunit protein bL36Family
AA [auth 0]IPR035977Large ribosomal subunit protein bL36 superfamilyHomologous Superfamily
BA [auth 1]IPR036610PEBP-like superfamilyHomologous Superfamily
BA [auth 1]IPR008914Phosphatidylethanolamine-binding proteinFamily
BA [auth 1]IPR035810Phosphatidylethanolamine-binding protein, eukaryoticFamily
CA [auth 2]IPR042831Large ribosomal subunit protein mL40, fungiFamily
IPR019927Large ribosomal subunit protein uL3, bacterial/organelle-typeFamily
IPR009000Translation protein, beta-barrel domain superfamilyHomologous Superfamily
IPR000597Large ribosomal subunit protein uL3Family
DA [auth 3]IPR019189Large ribosomal subunit protein mL41Family
EA [auth 4]IPR007741Ribosomal protein/NADH dehydrogenase domainDomain
EA [auth 4]IPR036249Thioredoxin-like superfamilyHomologous Superfamily
EA [auth 4]IPR039927Large ribosomal subunit protein mL43Family
FA [auth 5]IPR044443Large ribosomal subunit protein mL44, dsRNA binding domain, fungiDomain
FA [auth 5]IPR000999Ribonuclease III domainDomain
FA [auth 5]IPR014720Double-stranded RNA-binding domainDomain
FA [auth 5]IPR036389Ribonuclease III, endonuclease domain superfamilyHomologous Superfamily
GA [auth 6]IPR000086NUDIX hydrolase domainDomain
GA [auth 6]IPR015797NUDIX hydrolase-like domain superfamilyHomologous Superfamily
GA [auth 6]IPR021757Large ribosomal subunit protein mL46, N-terminalDomain
GA [auth 6]IPR040008Large ribosomal subunit protein mL46Family
HA [auth 7]IPR007740Large ribosomal subunit protein mL49Family
IA [auth 8]IPR018305Large ribosomal subunit protein mL50Family
JA [auth h]IPR019716Large ribosomal subunit protein mL53Family
JA [auth h]IPR042776Large ribosomal subunit protein mL53, fungiFamily
KA [auth i]IPR013870Large ribosomal subunit protein mL54Family
LA [auth 9]IPR040030Large ribosomal subunit protein mL57Family
LA [auth 9]IPR000999Ribonuclease III domainDomain
LA [auth 9]IPR036389Ribonuclease III, endonuclease domain superfamilyHomologous Superfamily
MA [auth a]IPR024388Large ribosomal subunit protein mL58Family
IPR013005Large ribosomal subunit protein uL4-likeFamily
IPR002136Large ribosomal subunit protein uL4Family
IPR023574Large ribosomal subunit protein uL4 domain superfamilyHomologous Superfamily
NA [auth b]IPR040922Large ribosomal subunit protein mL59 domainDomain
NA [auth b]IPR037507Large ribosomal subunit protein mL59Family
OA [auth c]IPR016340Large ribosomal subunit protein mL60Family
PA [auth d]IPR024629Large ribosomal subunit protein mL67Family
QA [auth n]IPR043519Nucleotidyltransferase superfamilyHomologous Superfamily
QA [auth n]IPR040152ATPase synthesis protein 25, mitochondrialFamily
IPR022803Large ribosomal subunit protein uL5 domain superfamilyHomologous Superfamily
IPR031309Large ribosomal subunit protein uL5, C-terminalDomain
IPR002132Large ribosomal subunit protein uL5Family
IPR020040Large ribosomal subunit protein uL6, alpha-beta domainDomain
IPR036789Large ribosomal subunit protein uL6-like, alpha-beta domain superfamilyHomologous Superfamily
IPR000702Large ribosomal subunit protein uL6-likeFamily
IPR019906Large ribosomal subunit protein uL6, bacterial-typeFamily
IPR002358Large ribosomal subunit protein uL6, conserved siteConserved Site
G [auth f]IPR043141Large ribosomal subunit protein uL10-like domain superfamilyHomologous Superfamily
G [auth f]IPR047865Large ribosomal subunit protein uL10, bacterial typeFamily
H [auth g]IPR020783Large ribosomal subunit protein uL11, C-terminalDomain
H [auth g]IPR000911Ribosomal protein uL11Family
H [auth g]IPR036769Large ribosomal subunit protein uL11, C-terminal domain superfamilyHomologous Superfamily
H [auth g]IPR006519Large ribosomal subunit protein uL11, bacterial-typeFamily
H [auth g]IPR020784Large ribosomal subunit protein uL11, N-terminalDomain
H [auth g]IPR036796Large ribosomal subunit protein uL11, N-terminal domain superfamilyHomologous Superfamily
I [auth H]IPR005822Large ribosomal subunit protein uL13Family
I [auth H]IPR036899Large ribosomal subunit protein uL13 superfamilyHomologous Superfamily
I [auth H]IPR005823Large ribosomal subunit protein uL13, bacterial-typeFamily